Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 18:07:04 (14828): Detected: vboxwrapper 26206
2025-06-03 18:07:04 (14828): Detected: BOINC client v8.0.2
2025-06-03 18:07:06 (14828): Detected: VirtualBox VboxManage Interface (Version: 7.0.10)
2025-06-03 18:07:06 (14828): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 18:07:07 (14828): Create VM. (boinc_90d7ce35f253521e, slot#6)
2025-06-03 18:07:07 (14828): Setting Memory Size for VM. (4800MB)
2025-06-03 18:07:08 (14828): Setting CPU Count for VM. (8)
2025-06-03 18:07:08 (14828): Setting Chipset Options for VM.
2025-06-03 18:07:09 (14828): Setting Graphics Controller Options for VM.
2025-06-03 18:07:09 (14828): Setting Boot Options for VM.
2025-06-03 18:07:10 (14828): Setting Network Configuration for NAT.
2025-06-03 18:07:10 (14828): Enabling VM Network Access.
2025-06-03 18:07:11 (14828): Disabling USB Support for VM.
2025-06-03 18:07:11 (14828): Disabling COM Port Support for VM.
2025-06-03 18:07:11 (14828): Disabling LPT Port Support for VM.
2025-06-03 18:07:11 (14828): Disabling Audio Support for VM.
2025-06-03 18:07:12 (14828): Disabling Clipboard Support for VM.
2025-06-03 18:07:12 (14828): Disabling Drag and Drop Support for VM.
2025-06-03 18:07:12 (14828): Adding storage controller(s) to VM.
2025-06-03 18:07:13 (14828): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 18:07:16 (14828): Adding VirtualBox Guest Additions to VM.
2025-06-03 18:07:16 (14828): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 18:07:16 (14828): forwarding host port 54293 to guest port 80
2025-06-03 18:07:16 (14828): Enabling remote desktop for VM.
2025-06-03 18:07:17 (14828): Enabling shared directory for VM.
2025-06-03 18:07:18 (14828): Starting VM using VBoxManage interface. (boinc_90d7ce35f253521e, slot#6)
2025-06-03 18:07:25 (14828): Successfully started VM. (PID = '32380')
2025-06-03 18:07:25 (14828): Reporting VM Process ID to BOINC.
2025-06-03 18:07:25 (14828): Guest Log: BIOS: VirtualBox 7.0.10
2025-06-03 18:07:25 (14828): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 18:07:25 (14828): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 18:07:25 (14828): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 18:07:25 (14828): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 18:07:25 (14828): Detected: Web Application Enabled (http://localhost:54293)
2025-06-03 18:07:25 (14828): Detected: Remote Desktop Enabled (localhost:54294)
2025-06-03 18:07:25 (14828): Preference change detected
2025-06-03 18:07:25 (14828): Setting CPU throttle for VM. (100%)
2025-06-03 18:07:25 (14828): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 18:07:27 (14828): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 18:07:27 (14828): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 18:07:30 (14828): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 18:07:30 (14828): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 18:07:30 (14828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 18:07:40 (14828): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 18:07:40 (14828): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 18:07:53 (14828): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000155 main     Log opened 2025-06-03T18:07:52.072329000Z
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000256 main     OS Product: Linux
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000291 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000318 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000349 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000349 main     Process ID: 925
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.000350 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 18:07:53 (14828): Guest Log: 00:00:00.001149 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 18:07:57 (14828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 18:07:57 (14828): Guest Log: [INFO] Mounting shared directory
2025-06-03 18:07:58 (14828): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 18:08:03 (14828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 18:08:03 (14828): Guest Log: [INFO] Detected branch: prod
2025-06-03 18:08:03 (14828): Guest Log: 00:00:10.002907 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 204 350 342 000ns (GuestNow=1 748 999 276 424 582 000 ns GuestLast=1 748 974 072 074 240 000 ns fSetTimeLastLoop=true )
2025-06-03 18:08:04 (14828): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 18:08:04 (14828): Guest Log: Copying input files
2025-06-03 18:08:05 (14828): Guest Log: Copied input files into RunAtlas.
2025-06-03 18:08:05 (14828): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 18:08:05 (14828): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 18:08:05 (14828): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 18:08:05 (14828): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 18:08:16 (14828): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 18:08:16 (14828): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 18:08:16 (14828): Guest Log: 2.6.3.0 1646 0 30148 146762 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 18:08:21 (14828): Guest Log: copied the webapp to /var/www
2025-06-03 18:08:21 (14828): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-03 18:08:21 (14828): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-03 18:08:21 (14828): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 18:08:21 (14828): Guest Log:  *** Starting ATLAS job. (PandaID=6666850815 taskID=44871837) ***
2025-06-03 19:47:31 (14828): Status Report: Elapsed Time: '6000.000000'
2025-06-03 19:47:31 (14828): Status Report: CPU Time: '44141.109375'
2025-06-03 20:11:29 (14828): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 22:57:58 (14828): Guest Log: 02:03:32.026076 timesync vgsvcTimeSyncWorker: Radical host time change: 9 996 529 000 000ns (HostNow=1 749 016 664 346 000 000 ns HostLast=1 749 006 667 817 000 000 ns)
2025-06-03 22:57:58 (14828): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 22:58:08 (14828): Guest Log: 02:03:42.027102 timesync vgsvcTimeSyncWorker: Radical guest time change: 9 995 899 480 000ns (GuestNow=1 749 016 674 347 248 000 ns GuestLast=1 749 006 678 447 768 000 ns fSetTimeLastLoop=true )
2025-06-03 23:06:20 (14828): Guest Log:  *** Job finished ***
2025-06-03 23:06:20 (14828): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:05:56,224 | INFO     | [payload] validate_pre thread has finished
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:05:56,740 | INFO     | [data] copytool_out thread has finished
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:05:59,766 | INFO     | [data] queue_monitor thread has finished
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:01,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465495336768)>', '<ExcThread(monitor, started 140464590141184)>']
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:01,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:01,763 | INFO     | [monitor] control thread has ended
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,089 | INFO     | all workflow threads have been joined
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,089 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,089 | INFO     | traces error code: 0
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,248 [wrapper] ==== pilot stdout END ====
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,252 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,256 [wrapper] pilotpid: 6005
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,260 [wrapper] Pilot exit status: 0
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,662 [wrapper] pandaids: 6666850815
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,693 [wrapper] cleanup supervisor_pilot  5259 6006
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,697 [wrapper] Test setup, not cleaning
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,701 [wrapper] apfmon messages muted
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,706 [wrapper] ==== wrapper stdout END ====
2025-06-03 23:06:20 (14828): Guest Log: 2025-06-04 06:06:06,710 [wrapper] ==== wrapper stderr END ====
2025-06-03 23:06:20 (14828): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 23:06:20 (14828): Guest Log:     "exeErrorCode": 0,
2025-06-03 23:06:20 (14828): Guest Log:     "exeErrorDiag": "",
2025-06-03 23:06:20 (14828): Guest Log:     "pilotErrorCode": 0,
2025-06-03 23:06:20 (14828): Guest Log:     "pilotErrorDiag": "",
2025-06-03 23:06:20 (14828): Guest Log:  *** Listing of results directory ***
2025-06-03 23:06:20 (14828): Guest Log: total 206196
2025-06-03 23:06:20 (14828): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 08:13 pilot3.tar.gz
2025-06-03 23:06:20 (14828): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 08:53 queuedata.json
2025-06-03 23:06:20 (14828): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 08:56 runpilot2-wrapper.sh
2025-06-03 23:06:20 (14828): Guest Log: -rwxr-xr-x. 1 atlas atlas      9283 Jun  4 01:07 init_data.xml
2025-06-03 23:06:20 (14828): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Jun  4 01:07 input.tar.gz
2025-06-03 23:06:20 (14828): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 01:07 start_atlas.sh
2025-06-03 23:06:20 (14828): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 01:07 EVNT.44871834._002557.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 23:06:20 (14828): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 01:08 pandaJob.out
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas    986069 Jun  4 01:09 agis_schedconf.cvmfs.json
2025-06-03 23:06:20 (14828): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 01:09 pilot3
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas 205390214 Jun  4 06:04 HITS.44871837._064876.pool.root.1
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas        98 Jun  4 06:05 pilot_heartbeat.json
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas      1025 Jun  4 06:05 memory_monitor_summary.json
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 06:05 agis_ddmendpoints.agis.ALL.json
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas    318883 Jun  4 06:05 log.44871837._064876.job.log.tgz.1
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas      7711 Jun  4 06:05 heartbeat.json
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 06:06 pilotlog.txt
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas    673521 Jun  4 06:06 log.44871837._064876.job.log.1
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 06:06 output.list
2025-06-03 23:06:20 (14828): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 06:06 runtime_log
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas   1013760 Jun  4 06:06 result.tar.gz
2025-06-03 23:06:20 (14828): Guest Log: -rw-r--r--. 1 atlas atlas      8584 Jun  4 06:06 runtime_log.err
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas       651 Jun  4 06:06 kqNMDmGI5d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyyYKDmQaBmvn.diag
2025-06-03 23:06:20 (14828): Guest Log: Looking for outputfile HITS.44871837._064876.pool.root.1
2025-06-03 23:06:20 (14828): Guest Log: HITS file was successfully produced
2025-06-03 23:06:20 (14828): Guest Log: -rw-------. 1 atlas atlas 205390214 Jun  4 06:04 /home/atlas/RunAtlas/HITS.44871837._064876.pool.root.1
2025-06-03 23:06:22 (14828): Guest Log: Successfully finished the ATLAS job!
2025-06-03 23:06:22 (14828): Guest Log: Copying the results back to the shared directory!
2025-06-03 23:06:22 (14828): Guest Log:  *** Contents of shared directory: ***
2025-06-03 23:06:22 (14828): Guest Log: total 419104
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root 222211715 Jun  4 01:07 ATLAS.root_0
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root 205390214 Jun  4  2025 HITS.pool.root.1
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root      9283 Jun  4 01:07 init_data.xml
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root    508880 Jun  3 22:25 input.tar.gz
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root   1013760 Jun  4  2025 result.tar.gz
2025-06-03 23:06:22 (14828): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 22:25 start_atlas.sh
2025-06-03 23:06:22 (14828): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 23:06:22 (14828): VM Completion File Detected.
2025-06-03 23:06:22 (14828): Powering off VM.
2025-06-03 23:06:24 (14828): Successfully stopped VM.
2025-06-03 23:06:24 (14828): Deregistering VM. (boinc_90d7ce35f253521e, slot#6)
2025-06-03 23:06:24 (14828): Removing network bandwidth throttle group from VM.
2025-06-03 23:06:24 (14828): Removing VM from VirtualBox.
23:06:30 (14828): called boinc_finish(0)

</stderr_txt>
]]>

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