Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:12:56 (4132): wrapper (7.7.26015): starting
10:12:56 (4132): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:12:56] Arguments: --nthreads 8
[2025-06-04 10:12:56] Threads: 8
[2025-06-04 10:12:56] Checking for CVMFS
[2025-06-04 10:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:12:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:12:58] 2.11.2.0 22417 32941 90508 146772 3 59 12683098 25165824 3908 130560 0 16867384 99.768 19600439 2205 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 10:12:58] CVMFS is ok
[2025-06-04 10:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:12:58] Checking for apptainer binary...
[2025-06-04 10:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:12:58] Running /usr/bin/apptainer --version
[2025-06-04 10:12:58] apptainer version 1.3.2-1.el7
[2025-06-04 10:12:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:43:23] cg-vwn254.simple-grid.lan
[2025-06-04 10:43:23] apptainer works
[2025-06-04 10:43:23] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:43:23] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:43:23] Starting ATLAS job with PandaID=6678070999
[2025-06-04 10:43:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:48:00]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:48:00] 2025-06-04 12:46:14,866 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:48:00] 2025-06-04 12:46:14,867 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:48:00] 2025-06-04 12:46:14,867 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:48:00] 2025-06-04 12:46:14,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:48:00] 2025-06-04 12:46:14,872 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:48:00] 2025-06-04 12:46:14,873 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | sum of deviations: 69947146452.00002
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | mean x: 1749034164.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | mean y: 2428852.6387665197
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | -- intersect: -33727911790.671417
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | intersect: -33727911790.671417
[2025-06-04 14:48:00] 2025-06-04 12:46:14,875 | INFO     | chi2: 5.920385913395343
[2025-06-04 14:48:00] 2025-06-04 12:46:14,876 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,878 | INFO     | sum of deviations: 83089360199.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,878 | INFO     | mean x: 1749034011.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,878 | INFO     | mean y: 2437227.4774774774
[2025-06-04 14:48:00] 2025-06-04 12:46:14,878 | INFO     | -- intersect: -42834176730.41901
[2025-06-04 14:48:00] 2025-06-04 12:46:14,878 | INFO     | intersect: -42834176730.41901
[2025-06-04 14:48:00] 2025-06-04 12:46:14,879 | INFO     | chi2: 5.1964993534484565
[2025-06-04 14:48:00] 2025-06-04 12:46:14,879 | INFO     | current chi2=5.1964993534484565 (change=12.227016456968382 %)
[2025-06-04 14:48:00] 2025-06-04 12:46:14,879 | INFO     | right removable region: 221
[2025-06-04 14:48:00] 2025-06-04 12:46:14,879 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,886 | INFO     | sum of deviations: -4979652650.000002
[2025-06-04 14:48:00] 2025-06-04 12:46:14,886 | INFO     | mean x: 1749034316.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,887 | INFO     | mean y: 2477523.414414414
[2025-06-04 14:48:00] 2025-06-04 12:46:14,887 | INFO     | -- intersect: 2569731560.504789
[2025-06-04 14:48:00] 2025-06-04 12:46:14,887 | INFO     | intersect: 2569731560.504789
[2025-06-04 14:48:00] 2025-06-04 12:46:14,887 | INFO     | chi2: 1.5378725218301104
[2025-06-04 14:48:00] 2025-06-04 12:46:14,887 | INFO     | current chi2=1.5378725218301104 (change=74.02411693551004 %)
[2025-06-04 14:48:00] 2025-06-04 12:46:14,888 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,889 | INFO     | sum of deviations: -28505202339.000015
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | mean x: 1749034469.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | mean y: 2493385.9815668203
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | -- intersect: 15737759567.158838
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | intersect: 15737759567.158838
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | chi2: 0.9059534018409569
[2025-06-04 14:48:00] 2025-06-04 12:46:14,890 | INFO     | current chi2=0.9059534018409569 (change=41.090474731751655 %)
[2025-06-04 14:48:00] 2025-06-04 12:46:14,891 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | sum of deviations: -25669466089.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | mean x: 1749034621.5
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | mean y: 2491327.400943396
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | -- intersect: 15198827705.69683
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | intersect: 15198827705.69683
[2025-06-04 14:48:00] 2025-06-04 12:46:14,893 | INFO     | chi2: 0.8902750169707312
[2025-06-04 14:48:00] 2025-06-04 12:46:14,894 | INFO     | current chi2=0.8902750169707312 (change=1.730595065746886 %)
[2025-06-04 14:48:00] 2025-06-04 12:46:14,894 | INFO     | left removable region: 30
[2025-06-04 14:48:00] 2025-06-04 12:46:14,894 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,901 | INFO     | sum of deviations: 3976185448.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,901 | INFO     | mean x: 1749034896.0
[2025-06-04 14:48:00] 2025-06-04 12:46:14,901 | INFO     | mean y: 2489370.9685863876
[2025-06-04 14:48:00] 2025-06-04 12:46:14,901 | INFO     | -- intersect: -3216343925.213629
[2025-06-04 14:48:00] 2025-06-04 12:46:14,902 | INFO     | intersect: -3216343925.213629
[2025-06-04 14:48:00] 2025-06-04 12:46:14,902 | INFO     | chi2: 0.0007567238477407635
[2025-06-04 14:48:00] 2025-06-04 12:46:14,902 | INFO     | -- intersect: -3216343925.213629
[2025-06-04 14:48:00] 2025-06-04 12:46:14,902 | INFO     | current memory leak: 1.84 B/s (using 191 data points, chi2=0.00)
[2025-06-04 14:48:00] 2025-06-04 12:46:14,903 | INFO     | ..............................
[2025-06-04 14:48:00] 2025-06-04 12:46:14,903 | INFO     | . Timing measurements:
[2025-06-04 14:48:00] 2025-06-04 12:46:14,903 | INFO     | . get job = 0 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,903 | INFO     | . initial setup = 3 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | . payload setup = 155 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | . stage-in = 0 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | . payload execution = 13942 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | . stage-out = 6 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | . log creation = 0 s
[2025-06-04 14:48:00] 2025-06-04 12:46:14,904 | INFO     | ..............................
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | 
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | job summary report
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | --------------------------------------------------
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | PanDA job id: 6678070999
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | task id: 45006595
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | errors: (none)
[2025-06-04 14:48:00] 2025-06-04 12:46:15,181 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | pilot state: finished 
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | transexitcode: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | exeerrorcode: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | exeerrordiag: 
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | exitcode: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | exitmsg: OK
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | cpuconsumptiontime: 51780 s
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | nevents: 400
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | neventsw: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:15,182 | INFO     | pid: 32731
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | pgrp: 32731
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | corecount: 8
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | event service: False
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 22: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 65: 2405508, 76: 2405536, 87: 2405592, 92: 2405826, 98: 2406134, 1
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | --------------------------------------------------
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | 
[2025-06-04 14:48:00] 2025-06-04 12:46:15,183 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-04 14:48:00] 2025-06-04 12:46:15,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:48:00] 2025-06-04 12:46:15,314 | INFO     | job 6678070999 has completed (purged errors)
[2025-06-04 14:48:00] 2025-06-04 12:46:15,315 | INFO     | overall cleanup function is called
[2025-06-04 14:48:00] 2025-06-04 12:46:16,324 | INFO     | --- collectZombieJob: --- 10, [32731]
[2025-06-04 14:48:00] 2025-06-04 12:46:16,324 | INFO     | zombie collector waiting for pid 32731
[2025-06-04 14:48:00] 2025-06-04 12:46:16,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:48:00] 2025-06-04 12:46:16,324 | INFO     | collected zombie processes
[2025-06-04 14:48:00] 2025-06-04 12:46:16,324 | INFO     | will attempt to kill all subprocesses of pid=32731
[2025-06-04 14:48:00] 2025-06-04 12:46:16,450 | INFO     | process IDs to be killed: [32731] (in reverse order)
[2025-06-04 14:48:00] 2025-06-04 12:46:17,206 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:48:00] 2025-06-04 12:46:17,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:48:00] 2025-06-04 12:46:17,210 | INFO     | did not find any defunct processes belonging to 32731
[2025-06-04 14:48:00] 2025-06-04 12:46:17,218 | INFO     | did not find any defunct processes belonging to 32731
[2025-06-04 14:48:00] 2025-06-04 12:46:17,218 | INFO     | ready for new job
[2025-06-04 14:48:00] 2025-06-04 12:46:17,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:48:00] 2025-06-04 12:46:17,220 | INFO     | **************************************
[2025-06-04 14:48:00] 2025-06-04 12:46:17,220 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:48:00] 2025-06-04 12:46:17,221 | INFO     | **************************************
[2025-06-04 14:48:00] 2025-06-04 12:46:17,221 | INFO     | 
[2025-06-04 14:48:00] 2025-06-04 12:46:17,221 | INFO     | pilot is running in a VM
[2025-06-04 14:48:00] 2025-06-04 12:46:17,221 | INFO     | architecture information:
[2025-06-04 14:48:00] 2025-06-04 12:46:17,236 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:48:00] 2025-06-04 12:46:17,442 | INFO     | cat /etc/os-release:
[2025-06-04 14:48:00] NAME="CentOS Linux"
[2025-06-04 14:48:00] VERSION="7 (Core)"
[2025-06-04 14:48:00] ID="centos"
[2025-06-04 14:48:00] ID_LIKE="rhel fedora"
[2025-06-04 14:48:00] VERSION_ID="7"
[2025-06-04 14:48:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:48:00] ANSI_COLOR="0;31"
[2025-06-04 14:48:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:48:00] HOME_URL="https://www.centos.org/"
[2025-06-04 14:48:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:48:00] 
[2025-06-04 14:48:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:48:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:48:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:48:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:48:00] 
[2025-06-04 14:48:00] 2025-06-04 12:46:17,443 | INFO     | **************************************
[2025-06-04 14:48:00] 2025-06-04 12:46:17,947 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-04 14:48:00] 2025-06-04 12:46:18,207 | INFO     | sufficient remaining disk space (496440967168 B)
[2025-06-04 14:48:00] 2025-06-04 12:46:18,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:48:00] 2025-06-04 12:46:18,208 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:48:00] 2025-06-04 12:46:18,208 | INFO     | update_server=False
[2025-06-04 14:48:00] 2025-06-04 12:46:18,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:48:00] 2025-06-04 12:46:18,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:48:00] 2025-06-04 12:46:18,234 | INFO     | all payload control threads have been joined
[2025-06-04 14:48:00] 2025-06-04 12:46:18,314 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:48:00] 2025-06-04 12:46:18,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:48:00] 2025-06-04 12:46:18,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:48:00] 2025-06-04 12:46:18,404 | INFO     | all data control threads have been joined
[2025-06-04 14:48:00] 2025-06-04 12:46:18,667 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 14:48:00] 2025-06-04 12:46:18,667 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 14:48:00] 2025-06-04 12:46:18,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:48:00] 2025-06-04 12:46:18,667 | INFO     | will abort loop
[2025-06-04 14:48:00] 2025-06-04 12:46:19,214 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,240 | INFO     | [payload] control thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,364 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,410 | INFO     | [data] control thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,499 | INFO     | [job] validate thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,673 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,702 | INFO     | all job control threads have been joined
[2025-06-04 14:48:00] 2025-06-04 12:46:19,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,925 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:19,939 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:20,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:48:00] 2025-06-04 12:46:20,142 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:20,216 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:20,569 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:20,586 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:20,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:48:00] 2025-06-04 12:46:20,708 | INFO     | [job] control thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:21,085 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:24,704 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:48:00] 2025-06-04 12:46:25,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692543637312)>', '<ExcThread(monitor, started 139691588314880)>']
[2025-06-04 14:48:00] 2025-06-04 12:46:26,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:48:00] 2025-06-04 12:46:26,361 | INFO     | [monitor] control thread has ended
[2025-06-04 14:48:00] 2025-06-04 12:46:30,879 | INFO     | all workflow threads have been joined
[2025-06-04 14:48:00] 2025-06-04 12:46:30,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:48:00] 2025-06-04 12:46:30,879 | INFO     | traces error code: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:30,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:48:00] 2025-06-04 12:46:31,184 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:48:00] 2025-06-04 12:46:31,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:48:00] 2025-06-04 12:46:31,334 [wrapper] pilotpid: 26065
[2025-06-04 14:48:00] 2025-06-04 12:46:31,415 [wrapper] Pilot exit status: 0
[2025-06-04 14:48:00] 2025-06-04 12:46:31,928 [wrapper] pandaids: 6678070999
[2025-06-04 14:48:00] 2025-06-04 12:46:32,944 [wrapper] cleanup supervisor_pilot 10944 26066
[2025-06-04 14:48:00] 2025-06-04 12:46:33,044 [wrapper] Test setup, not cleaning
[2025-06-04 14:48:00] 2025-06-04 12:46:33,141 [wrapper] apfmon messages muted
[2025-06-04 14:48:00] 2025-06-04 12:46:33,202 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:48:00] 2025-06-04 12:46:33,311 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:48:00]  *** Error codes and diagnostics ***
[2025-06-04 14:48:00]     "exeErrorCode": 0,
[2025-06-04 14:48:00]     "exeErrorDiag": "",
[2025-06-04 14:48:00]     "pilotErrorCode": 0,
[2025-06-04 14:48:00]     "pilotErrorDiag": "",
[2025-06-04 14:48:00]  *** Listing of results directory ***
[2025-06-04 14:48:00] total 391552
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:09 pilot3.tar.gz
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:33 queuedata.json
[2025-06-04 14:48:00] -rwx------. 1 boinc boinc     37140 Jun  3 22:35 runpilot2-wrapper.sh
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc       100 Jun  4 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:48:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 10:12 run_atlas
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc       105 Jun  4 10:12 job.xml
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc      6390 Jun  4 10:12 init_data.xml
[2025-06-04 14:48:00] -rw-r--r--. 2 boinc boinc 213674899 Jun  4 10:12 EVNT.45006593._001799.pool.root.1
[2025-06-04 14:48:00] drwxrwx--x. 2 boinc boinc        68 Jun  4 10:12 shared
[2025-06-04 14:48:00] -rw-r--r--. 2 boinc boinc    508882 Jun  4 10:12 input.tar.gz
[2025-06-04 14:48:00] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:12 start_atlas.sh
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc         0 Jun  4 10:12 boinc_lockfile
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc      2525 Jun  4 10:43 pandaJob.out
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc    986774 Jun  4 10:46 agis_schedconf.cvmfs.json
[2025-06-04 14:48:00] drwx------. 4 boinc boinc      4096 Jun  4 10:46 pilot3
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc 180234629 Jun  4 14:43 HITS.45006595._044874.pool.root.1
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc       531 Jun  4 14:43 boinc_task_state.xml
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc      1013 Jun  4 14:44 memory_monitor_summary.json
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc   1598969 Jun  4 14:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc    389238 Jun  4 14:44 log.45006595._044874.job.log.tgz.1
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc        95 Jun  4 14:46 pilot_heartbeat.json
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc      7684 Jun  4 14:46 heartbeat.json
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc      4602 Jun  4 14:46 pilotlog.txt
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc   1221708 Jun  4 14:46 log.45006595._044874.job.log.1
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc       357 Jun  4 14:46 output.list
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc       620 Jun  4 14:46 runtime_log
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc   1628160 Jun  4 14:46 result.tar.gz
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc      8659 Jun  4 14:46 runtime_log.err
[2025-06-04 14:48:00] -rw-------. 1 boinc boinc       657 Jun  4 14:46 jHPKDm0Wng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrsZKDmPOkYhn.diag
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc      8192 Jun  4 14:47 boinc_mmap_file
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc        28 Jun  4 14:47 wrapper_checkpoint.txt
[2025-06-04 14:48:00] -rw-r--r--. 1 boinc boinc     20496 Jun  4 14:48 stderr.txt
[2025-06-04 14:48:01] HITS file was successfully produced:
[2025-06-04 14:48:01] -rw-------. 1 boinc boinc 180234629 Jun  4 14:43 shared/HITS.pool.root.1
[2025-06-04 14:48:01]  *** Contents of shared directory: ***
[2025-06-04 14:48:01] total 386788
[2025-06-04 14:48:01] -rw-r--r--. 2 boinc boinc 213674899 Jun  4 10:12 ATLAS.root_0
[2025-06-04 14:48:01] -rw-r--r--. 2 boinc boinc    508882 Jun  4 10:12 input.tar.gz
[2025-06-04 14:48:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:12 start_atlas.sh
[2025-06-04 14:48:01] -rw-------. 1 boinc boinc 180234629 Jun  4 14:43 HITS.pool.root.1
[2025-06-04 14:48:01] -rw-------. 1 boinc boinc   1628160 Jun  4 14:46 result.tar.gz
14:48:02 (4132): run_atlas exited; CPU time 51977.297804
14:48:02 (4132): called boinc_finish(0)

</stderr_txt>
]]>

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