Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:16:28 (12160): wrapper (7.7.26015): starting
18:16:28 (12160): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:16:28] Arguments: --nthreads 8
[2025-06-03 18:16:28] Threads: 8
[2025-06-03 18:16:28] Checking for CVMFS
[2025-06-03 18:16:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:16:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:16:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:16:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:16:30] 2.11.2.0 21799 91910 438580 146760 3 77 12041913 18432001 16901 130560 0 440743234 99.179 791960853 35373 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 18:16:30] CVMFS is ok
[2025-06-03 18:16:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 18:16:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 18:16:30] Further information can be found at the LHC@home message board.
[2025-06-03 18:16:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:16:30] Checking for apptainer binary...
[2025-06-03 18:16:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:16:30] Running /usr/bin/apptainer --version
[2025-06-03 18:16:30] apptainer version 1.3.2-1.el7
[2025-06-03 18:16:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:16:34] c-211-14.aglt2.org
[2025-06-03 18:16:34] apptainer works
[2025-06-03 18:16:34] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:16:34] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:16:34] Starting ATLAS job with PandaID=6669240465
[2025-06-03 18:16:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:53:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:53:06] 2025-06-04 03:52:45,961 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6669240465/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:53:06] 2025-06-04 03:52:45,962 | INFO     | extracted standard info from prmon json
[2025-06-03 23:53:06] 2025-06-04 03:52:45,962 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:53:06] 2025-06-04 03:52:45,962 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:53:06] 2025-06-04 03:52:45,963 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:53:06] 2025-06-04 03:52:45,963 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:53:06] 2025-06-04 03:52:45,978 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:53:06] 2025-06-04 03:52:45,979 | INFO     | sum of square deviations: 10743035540.80982
[2025-06-03 23:53:06] 2025-06-04 03:52:45,987 | INFO     | sum of deviations: 47147400134.9324
[2025-06-03 23:53:06] 2025-06-04 03:52:45,987 | INFO     | mean x: 1748999201.5460122
[2025-06-03 23:53:06] 2025-06-04 03:52:45,987 | INFO     | mean y: 2455181.8711656444
[2025-06-03 23:53:06] 2025-06-04 03:52:45,987 | INFO     | -- intersect: -7673286453.509401
[2025-06-03 23:53:06] 2025-06-04 03:52:45,987 | INFO     | intersect: -7673286453.509401
[2025-06-03 23:53:06] 2025-06-04 03:52:45,988 | INFO     | chi2: 6.82512735746061
[2025-06-03 23:53:06] 2025-06-04 03:52:45,993 | INFO     | sum of square deviations: 10256268198.299133
[2025-06-03 23:53:06] 2025-06-04 03:52:45,996 | INFO     | sum of deviations: 90326431182.54199
[2025-06-03 23:53:06] 2025-06-04 03:52:46,000 | INFO     | mean x: 1748999049.046729
[2025-06-03 23:53:06] 2025-06-04 03:52:46,001 | INFO     | mean y: 2468581.563862928
[2025-06-03 23:53:06] 2025-06-04 03:52:46,001 | INFO     | -- intersect: -15400876883.626856
[2025-06-03 23:53:06] 2025-06-04 03:52:46,001 | INFO     | intersect: -15400876883.626856
[2025-06-03 23:53:06] 2025-06-04 03:52:46,001 | INFO     | chi2: 5.2520121540193925
[2025-06-03 23:53:06] 2025-06-04 03:52:46,002 | INFO     | current chi2=5.2520121540193925 (change=23.04887690808627 %)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,002 | INFO     | right removable region: 320
[2025-06-03 23:53:06] 2025-06-04 03:52:46,002 | INFO     | sum of square deviations: 10256259048.299133
[2025-06-03 23:53:06] 2025-06-04 03:52:46,009 | INFO     | sum of deviations: -59296755686.7944
[2025-06-03 23:53:06] 2025-06-04 03:52:46,010 | INFO     | mean x: 1748999354.046729
[2025-06-03 23:53:06] 2025-06-04 03:52:46,010 | INFO     | mean y: 2488496.0529595017
[2025-06-03 23:53:06] 2025-06-04 03:52:46,010 | INFO     | -- intersect: 10114361344.12314
[2025-06-03 23:53:06] 2025-06-04 03:52:46,010 | INFO     | intersect: 10114361344.12314
[2025-06-03 23:53:06] 2025-06-04 03:52:46,011 | INFO     | chi2: 2.727876110867981
[2025-06-03 23:53:06] 2025-06-04 03:52:46,011 | INFO     | current chi2=2.727876110867981 (change=60.03186507741699 %)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,012 | INFO     | sum of square deviations: 9784413068.287933
[2025-06-03 23:53:06] 2025-06-04 03:52:46,019 | INFO     | sum of deviations: -98652672418.4367
[2025-06-03 23:53:06] 2025-06-04 03:52:46,019 | INFO     | mean x: 1748999506.5474684
[2025-06-03 23:53:06] 2025-06-04 03:52:46,019 | INFO     | mean y: 2501154.829113924
[2025-06-03 23:53:06] 2025-06-04 03:52:46,019 | INFO     | -- intersect: 17637026003.198616
[2025-06-03 23:53:06] 2025-06-04 03:52:46,020 | INFO     | intersect: 17637026003.198616
[2025-06-03 23:53:06] 2025-06-04 03:52:46,024 | INFO     | chi2: 1.979950201633697
[2025-06-03 23:53:06] 2025-06-04 03:52:46,025 | INFO     | current chi2=1.979950201633697 (change=27.41788405472352 %)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,025 | INFO     | sum of square deviations: 9327265038.276482
[2025-06-03 23:53:06] 2025-06-04 03:52:46,032 | INFO     | sum of deviations: -105814618866.37946
[2025-06-03 23:53:06] 2025-06-04 03:52:46,032 | INFO     | mean x: 1748999659.0482316
[2025-06-03 23:53:06] 2025-06-04 03:52:46,033 | INFO     | mean y: 2503534.491961415
[2025-06-03 23:53:06] 2025-06-04 03:52:46,033 | INFO     | -- intersect: 19844304058.02613
[2025-06-03 23:53:06] 2025-06-04 03:52:46,033 | INFO     | intersect: 19844304058.02613
[2025-06-03 23:53:06] 2025-06-04 03:52:46,034 | INFO     | chi2: 1.9374140818865846
[2025-06-03 23:53:06] 2025-06-04 03:52:46,034 | INFO     | current chi2=1.9374140818865846 (change=2.148342908423401 %)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,034 | INFO     | left removable region: 30
[2025-06-03 23:53:06] 2025-06-04 03:52:46,034 | INFO     | sum of square deviations: 7562507435.72413
[2025-06-03 23:53:06] 2025-06-04 03:52:46,041 | INFO     | sum of deviations: -42660403381.48278
[2025-06-03 23:53:06] 2025-06-04 03:52:46,041 | INFO     | mean x: 1748999933.5517242
[2025-06-03 23:53:06] 2025-06-04 03:52:46,041 | INFO     | mean y: 2511066.165517241
[2025-06-03 23:53:06] 2025-06-04 03:52:46,042 | INFO     | -- intersect: 9868688827.134388
[2025-06-03 23:53:06] 2025-06-04 03:52:46,042 | INFO     | intersect: 9868688827.134388
[2025-06-03 23:53:06] 2025-06-04 03:52:46,042 | INFO     | chi2: 0.21379523541517528
[2025-06-03 23:53:06] 2025-06-04 03:52:46,043 | INFO     | -- intersect: 9868688827.134388
[2025-06-03 23:53:06] 2025-06-04 03:52:46,043 | INFO     | current memory leak: -5.64 B/s (using 290 data points, chi2=0.21)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,044 | INFO     | ..............................
[2025-06-03 23:53:06] 2025-06-04 03:52:46,044 | INFO     | . Timing measurements:
[2025-06-03 23:53:06] 2025-06-04 03:52:46,044 | INFO     | . get job = 0 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,044 | INFO     | . initial setup = 4 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,048 | INFO     | . payload setup = 84 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,048 | INFO     | . stage-in = 0 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,049 | INFO     | . payload execution = 19889 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,049 | INFO     | . stage-out = 4 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,049 | INFO     | . log creation = 0 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,049 | INFO     | ..............................
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | 
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | job summary report
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | --------------------------------------------------
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | PanDA job id: 6669240465
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | task id: 44871837
[2025-06-03 23:53:06] 2025-06-04 03:52:46,363 | INFO     | errors: (none)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | pilot state: finished 
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | transexitcode: 0
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | exeerrorcode: 0
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | exeerrordiag: 
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | exitcode: 0
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | exitmsg: OK
[2025-06-03 23:53:06] 2025-06-04 03:52:46,364 | INFO     | cpuconsumptiontime: 73334 s
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | nevents: 400
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | neventsw: 0
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | pid: 24727
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | pgrp: 24727
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | corecount: 8
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | event service: False
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | sizes: {0: 2405063, 1: 2405262, 2: 2405262, 13: 2405290, 23: 2405346, 32: 2405580, 34: 2405736, 19978: 2438889, 19983: 2447830, 19985: 2447886, 20025: 2448056}
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | --------------------------------------------------
[2025-06-03 23:53:06] 2025-06-04 03:52:46,365 | INFO     | 
[2025-06-03 23:53:06] 2025-06-04 03:52:46,366 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 23:53:06] 2025-06-04 03:52:46,655 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,657 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,658 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,658 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:53:06] 2025-06-04 03:52:46,658 | INFO     | job 6669240465 has completed (purged errors)
[2025-06-03 23:53:06] 2025-06-04 03:52:46,662 | INFO     | overall cleanup function is called
[2025-06-03 23:53:06] 2025-06-04 03:52:47,671 | INFO     | --- collectZombieJob: --- 10, [24727]
[2025-06-03 23:53:06] 2025-06-04 03:52:47,672 | INFO     | zombie collector waiting for pid 24727
[2025-06-03 23:53:06] 2025-06-04 03:52:47,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:53:06] 2025-06-04 03:52:47,672 | INFO     | collected zombie processes
[2025-06-03 23:53:06] 2025-06-04 03:52:47,672 | INFO     | will attempt to kill all subprocesses of pid=24727
[2025-06-03 23:53:06] 2025-06-04 03:52:48,654 | INFO     | process IDs to be killed: [24727] (in reverse order)
[2025-06-03 23:53:06] 2025-06-04 03:52:49,276 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:53:06] 2025-06-04 03:52:49,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:53:06] 2025-06-04 03:52:49,288 | INFO     | did not find any defunct processes belonging to 24727
[2025-06-03 23:53:06] 2025-06-04 03:52:49,298 | INFO     | did not find any defunct processes belonging to 24727
[2025-06-03 23:53:06] 2025-06-04 03:52:49,299 | INFO     | ready for new job
[2025-06-03 23:53:06] 2025-06-04 03:52:49,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:53:06] 2025-06-04 03:52:49,301 | INFO     | **************************************
[2025-06-03 23:53:06] 2025-06-04 03:52:49,301 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:53:06] 2025-06-04 03:52:49,302 | INFO     | **************************************
[2025-06-03 23:53:06] 2025-06-04 03:52:49,302 | INFO     | 
[2025-06-03 23:53:06] 2025-06-04 03:52:49,304 | INFO     | architecture information:
[2025-06-03 23:53:06] 2025-06-04 03:52:49,305 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:53:06] 2025-06-04 03:52:49,373 | INFO     | cat /etc/os-release:
[2025-06-03 23:53:06] NAME="CentOS Linux"
[2025-06-03 23:53:06] VERSION="7 (Core)"
[2025-06-03 23:53:06] ID="centos"
[2025-06-03 23:53:06] ID_LIKE="rhel fedora"
[2025-06-03 23:53:06] VERSION_ID="7"
[2025-06-03 23:53:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:53:06] ANSI_COLOR="0;31"
[2025-06-03 23:53:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:53:06] HOME_URL="https://www.centos.org/"
[2025-06-03 23:53:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:53:06] 
[2025-06-03 23:53:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:53:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:53:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:53:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:53:06] 
[2025-06-03 23:53:06] 2025-06-04 03:52:49,374 | INFO     | **************************************
[2025-06-03 23:53:06] 2025-06-04 03:52:49,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 23:53:06] 2025-06-04 03:52:50,015 | INFO     | sufficient remaining disk space (56538169344 B)
[2025-06-03 23:53:06] 2025-06-04 03:52:50,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:53:06] 2025-06-04 03:52:50,016 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:53:06] 2025-06-04 03:52:50,016 | INFO     | update_server=False
[2025-06-03 23:53:06] 2025-06-04 03:52:50,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:53:06] 2025-06-04 03:52:50,016 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:53:06] 2025-06-04 03:52:50,017 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:53:06] 2025-06-04 03:52:50,017 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:53:06] 2025-06-04 03:52:50,017 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:53:06] 2025-06-04 03:52:50,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:53:06] 2025-06-04 03:52:50,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:53:06] 2025-06-04 03:52:50,239 | INFO     | aborting loop
[2025-06-03 23:53:06] 2025-06-04 03:52:50,520 | INFO     | all job control threads have been joined
[2025-06-03 23:53:06] 2025-06-04 03:52:50,703 | INFO     | all payload control threads have been joined
[2025-06-03 23:53:06] 2025-06-04 03:52:51,021 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,035 | INFO     | all data control threads have been joined
[2025-06-03 23:53:06] 2025-06-04 03:52:51,178 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,185 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,244 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:53:06] 2025-06-04 03:52:51,526 | INFO     | [job] control thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,586 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,658 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,709 | INFO     | [payload] control thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:51,902 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,018 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,040 | INFO     | [data] control thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,054 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,112 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,196 | INFO     | [job] validate thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:52,395 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:53,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:53:06] 2025-06-04 03:52:57,139 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:53:06] 2025-06-04 03:52:58,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644813342528)>', '<ExcThread(monitor, started 139644503037696)>']
[2025-06-03 23:53:06] 2025-06-04 03:52:59,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:53:06] 2025-06-04 03:52:59,111 | INFO     | [monitor] control thread has ended
[2025-06-03 23:53:06] 2025-06-04 03:53:03,715 | INFO     | all workflow threads have been joined
[2025-06-03 23:53:06] 2025-06-04 03:53:03,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:53:06] 2025-06-04 03:53:03,716 | INFO     | traces error code: 0
[2025-06-03 23:53:06] 2025-06-04 03:53:03,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:53:06] 2025-06-04 03:53:04,432 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:53:06] 2025-06-04 03:53:04,464 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:53:06] 2025-06-04 03:53:04,490 [wrapper] pilotpid: 40896
[2025-06-03 23:53:06] 2025-06-04 03:53:04,526 [wrapper] Pilot exit status: 0
[2025-06-03 23:53:06] 2025-06-04 03:53:04,683 [wrapper] pandaids: 6669240465
[2025-06-03 23:53:06] 2025-06-04 03:53:05,255 [wrapper] cleanup supervisor_pilot 37227 40897
[2025-06-03 23:53:06] 2025-06-04 03:53:05,290 [wrapper] Test setup, not cleaning
[2025-06-03 23:53:06] 2025-06-04 03:53:05,323 [wrapper] apfmon messages muted
[2025-06-03 23:53:06] 2025-06-04 03:53:05,356 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:53:06] 2025-06-04 03:53:05,399 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:53:06]  *** Error codes and diagnostics ***
[2025-06-03 23:53:06]     "exeErrorCode": 0,
[2025-06-03 23:53:06]     "exeErrorDiag": "",
[2025-06-03 23:53:06]     "pilotErrorCode": 0,
[2025-06-03 23:53:06]     "pilotErrorDiag": "",
[2025-06-03 23:53:06]  *** Listing of results directory ***
[2025-06-03 23:53:06] total 417540
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas      5111 May 29 01:45 queuedata.json
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas    495897 May 29 01:46 pilot3.tar.gz
[2025-06-03 23:53:06] -rwx------ 1 boincer umatlas     37140 May 29 01:47 runpilot2-wrapper.sh
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas       100 Jun  3 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:53:06] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 18:16 run_atlas
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas       105 Jun  3 18:16 job.xml
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas 222663988 Jun  3 18:16 EVNT.44871834._003781.pool.root.1
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 18:16 start_atlas.sh
[2025-06-03 23:53:06] drwxrwx--x 2 boincer umatlas      4096 Jun  3 18:16 shared
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas    508881 Jun  3 18:16 input.tar.gz
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas         0 Jun  3 18:16 boinc_lockfile
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas      2559 Jun  3 18:16 pandaJob.out
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas    986861 Jun  3 18:17 agis_schedconf.cvmfs.json
[2025-06-03 23:53:06] drwx------ 4 boincer umatlas      4096 Jun  3 18:17 pilot3
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas      6132 Jun  3 23:46 init_data.xml
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas 196683915 Jun  3 23:50 HITS.44871837._095807.pool.root.1
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas       531 Jun  3 23:50 boinc_task_state.xml
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas      1073 Jun  3 23:51 memory_monitor_summary.json
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas   1603667 Jun  3 23:52 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas    444089 Jun  3 23:52 log.44871837._095807.job.log.tgz.1
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas        95 Jun  3 23:52 pilot_heartbeat.json
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas      7756 Jun  3 23:52 heartbeat.json
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas      4476 Jun  3 23:53 pilotlog.txt
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:53 boinc_mmap_file
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas   1744875 Jun  3 23:53 log.44871837._095807.job.log.1
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas        28 Jun  3 23:53 wrapper_checkpoint.txt
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas       357 Jun  3 23:53 output.list
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:53 runtime_log
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas   2211840 Jun  3 23:53 result.tar.gz
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas      8660 Jun  3 23:53 runtime_log.err
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas       662 Jun  3 23:53 lVsNDmtHle7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDudKDm57t8om.diag
[2025-06-03 23:53:06] -rw-r--r-- 1 boincer umatlas     20947 Jun  3 23:53 stderr.txt
[2025-06-03 23:53:06] HITS file was successfully produced:
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas 196683915 Jun  3 23:50 shared/HITS.pool.root.1
[2025-06-03 23:53:06]  *** Contents of shared directory: ***
[2025-06-03 23:53:06] total 412204
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas 222663988 Jun  3 18:16 ATLAS.root_0
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 18:16 start_atlas.sh
[2025-06-03 23:53:06] -rw-r--r-- 2 boincer umatlas    508881 Jun  3 18:16 input.tar.gz
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas 196683915 Jun  3 23:50 HITS.pool.root.1
[2025-06-03 23:53:06] -rw------- 1 boincer umatlas   2211840 Jun  3 23:53 result.tar.gz
23:53:07 (12160): run_atlas exited; CPU time 74117.419684
23:53:07 (12160): called boinc_finish(0)

</stderr_txt>
]]>

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