Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:12:46 (9060): wrapper (7.7.26015): starting
18:12:46 (9060): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:12:46] Arguments: --nthreads 8
[2025-06-03 18:12:46] Threads: 8
[2025-06-03 18:12:46] Checking for CVMFS
[2025-06-03 18:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:12:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:12:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:12:47] 2.11.2.0 2885 17728 70216 146759 3 9 11108206 20275200 1 130560 0 6995417 99.981 3228011 4191 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 18:12:47] CVMFS is ok
[2025-06-03 18:12:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 18:12:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 18:12:47] Further information can be found at the LHC@home message board.
[2025-06-03 18:12:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:12:47] Checking for apptainer binary...
[2025-06-03 18:12:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:12:47] Running /usr/bin/apptainer --version
[2025-06-03 18:12:47] apptainer version 1.3.2-1.el7
[2025-06-03 18:12:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:12:49] c-204-6.aglt2.org
[2025-06-03 18:12:49] apptainer works
[2025-06-03 18:12:49] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:12:49] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:12:49] Starting ATLAS job with PandaID=6677920859
[2025-06-03 18:12:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 20:03:44]  *** The last 200 lines of the pilot log: ***
[2025-06-03 20:03:44] 2025-06-04 00:03:30,613 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677920859/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,615 | INFO     | extracted standard info from prmon json
[2025-06-03 20:03:44] 2025-06-04 00:03:30,615 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:03:44] 2025-06-04 00:03:30,615 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:03:44] 2025-06-04 00:03:30,615 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:03:44] 2025-06-04 00:03:30,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:03:44] 2025-06-04 00:03:30,619 | INFO     | fitting pss+swap vs Time
[2025-06-03 20:03:44] 2025-06-04 00:03:30,620 | INFO     | sum of square deviations: 390582207.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,621 | INFO     | sum of deviations: 15279959082.500004
[2025-06-03 20:03:44] 2025-06-04 00:03:30,621 | INFO     | mean x: 1748992082.5
[2025-06-03 20:03:44] 2025-06-04 00:03:30,621 | INFO     | mean y: 2476403.9907407407
[2025-06-03 20:03:44] 2025-06-04 00:03:30,621 | INFO     | -- intersect: -68419809550.823555
[2025-06-03 20:03:44] 2025-06-04 00:03:30,621 | INFO     | intersect: -68419809550.823555
[2025-06-03 20:03:44] 2025-06-04 00:03:30,622 | INFO     | chi2: 1.5581979819060334
[2025-06-03 20:03:44] 2025-06-04 00:03:30,622 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,623 | INFO     | sum of deviations: 14799578440.000002
[2025-06-03 20:03:44] 2025-06-04 00:03:30,623 | INFO     | mean x: 1748991930.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,623 | INFO     | mean y: 2474988.1165048545
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | -- intersect: -76396580721.45772
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | intersect: -76396580721.45772
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | chi2: 1.5594779910329422
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | current chi2=1.5594779910329422 (change=-0.08214675809957009 %)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | right removable region: 102
[2025-06-03 20:03:44] 2025-06-04 00:03:30,624 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,625 | INFO     | sum of deviations: -2376440074.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,625 | INFO     | mean x: 1748992235.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,625 | INFO     | mean y: 2527511.0485436893
[2025-06-03 20:03:44] 2025-06-04 00:03:30,625 | INFO     | -- intersect: 12270296488.470558
[2025-06-03 20:03:44] 2025-06-04 00:03:30,625 | INFO     | intersect: 12270296488.470558
[2025-06-03 20:03:44] 2025-06-04 00:03:30,626 | INFO     | chi2: 0.030443174689394985
[2025-06-03 20:03:44] 2025-06-04 00:03:30,626 | INFO     | current chi2=0.030443174689394985 (change=98.0462575973718 %)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,626 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 20:03:44] 2025-06-04 00:03:30,626 | INFO     | sum of deviations: -3780573331.9999995
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | mean x: 1748992387.5
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | mean y: 2531933.551020408
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | -- intersect: 22661188513.67442
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | intersect: 22661188513.67442
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | chi2: 0.007025962434387776
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | current chi2=0.007025962434387776 (change=76.92105864098562 %)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,627 | INFO     | sum of square deviations: 249388862.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,628 | INFO     | sum of deviations: -3633724982.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,628 | INFO     | mean x: 1748992540.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,628 | INFO     | mean y: 2531396.9677419355
[2025-06-03 20:03:44] 2025-06-04 00:03:30,628 | INFO     | -- intersect: 25486259238.548874
[2025-06-03 20:03:44] 2025-06-04 00:03:30,628 | INFO     | intersect: 25486259238.548874
[2025-06-03 20:03:44] 2025-06-04 00:03:30,629 | INFO     | chi2: 0.006297180019306385
[2025-06-03 20:03:44] 2025-06-04 00:03:30,629 | INFO     | current chi2=0.006297180019306385 (change=10.372705830512958 %)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,629 | INFO     | left removable region: 30
[2025-06-03 20:03:44] 2025-06-04 00:03:30,629 | INFO     | sum of square deviations: 115715658.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,629 | INFO     | sum of deviations: -2415348863.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | mean x: 1748992814.5
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | mean y: 2528997.0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | -- intersect: 36509496843.11245
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | intersect: 36509496843.11245
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | chi2: 0.004839704835540641
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | -- intersect: 36509496843.11245
[2025-06-03 20:03:44] 2025-06-04 00:03:30,630 | INFO     | current memory leak: -20.87 B/s (using 72 data points, chi2=0.00)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | ..............................
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . Timing measurements:
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . get job = 0 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . initial setup = 2 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . payload setup = 11 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . stage-in = 0 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,631 | INFO     | . payload execution = 6579 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,632 | INFO     | . stage-out = 0 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,632 | INFO     | . log creation = 0 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,632 | INFO     | ..............................
[2025-06-03 20:03:44] 2025-06-04 00:03:30,725 | INFO     | 
[2025-06-03 20:03:44] 2025-06-04 00:03:30,725 | INFO     | job summary report
[2025-06-03 20:03:44] 2025-06-04 00:03:30,725 | INFO     | --------------------------------------------------
[2025-06-03 20:03:44] 2025-06-04 00:03:30,725 | INFO     | PanDA job id: 6677920859
[2025-06-03 20:03:44] 2025-06-04 00:03:30,725 | INFO     | task id: 45006595
[2025-06-03 20:03:44] 2025-06-04 00:03:30,726 | INFO     | errors: (none)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,726 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 20:03:44] 2025-06-04 00:03:30,726 | INFO     | pilot state: finished 
[2025-06-03 20:03:44] 2025-06-04 00:03:30,726 | INFO     | transexitcode: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,726 | INFO     | exeerrorcode: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | exeerrordiag: 
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | exitcode: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | exitmsg: OK
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | cpuconsumptiontime: 48425 s
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | nevents: 400
[2025-06-03 20:03:44] 2025-06-04 00:03:30,727 | INFO     | neventsw: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,728 | INFO     | pid: 19267
[2025-06-03 20:03:44] 2025-06-04 00:03:30,728 | INFO     | pgrp: 19267
[2025-06-03 20:03:44] 2025-06-04 00:03:30,728 | INFO     | corecount: 8
[2025-06-03 20:03:44] 2025-06-04 00:03:30,728 | INFO     | event service: False
[2025-06-03 20:03:44] 2025-06-04 00:03:30,728 | INFO     | sizes: {0: 2404956, 1: 2405211, 7: 2405417, 12: 2405445, 6593: 2432342, 6594: 2432341, 6595: 2441466, 6597: 2441550, 6608: 2441720}
[2025-06-03 20:03:44] 2025-06-04 00:03:30,729 | INFO     | --------------------------------------------------
[2025-06-03 20:03:44] 2025-06-04 00:03:30,729 | INFO     | 
[2025-06-03 20:03:44] 2025-06-04 00:03:30,729 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 20:03:44] 2025-06-04 00:03:30,759 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,760 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,760 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,760 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,761 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,761 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,761 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,762 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,763 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,763 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,763 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,763 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 20:03:44] 2025-06-04 00:03:30,764 | INFO     | job 6677920859 has completed (purged errors)
[2025-06-03 20:03:44] 2025-06-04 00:03:30,764 | INFO     | overall cleanup function is called
[2025-06-03 20:03:44] 2025-06-04 00:03:31,772 | INFO     | --- collectZombieJob: --- 10, [19267]
[2025-06-03 20:03:44] 2025-06-04 00:03:31,772 | INFO     | zombie collector waiting for pid 19267
[2025-06-03 20:03:44] 2025-06-04 00:03:31,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 20:03:44] 2025-06-04 00:03:31,773 | INFO     | collected zombie processes
[2025-06-03 20:03:44] 2025-06-04 00:03:31,773 | INFO     | will attempt to kill all subprocesses of pid=19267
[2025-06-03 20:03:44] 2025-06-04 00:03:31,866 | INFO     | process IDs to be killed: [19267] (in reverse order)
[2025-06-03 20:03:44] 2025-06-04 00:03:31,919 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 20:03:44] 2025-06-04 00:03:31,920 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 20:03:44] 2025-06-04 00:03:31,924 | INFO     | did not find any defunct processes belonging to 19267
[2025-06-03 20:03:44] 2025-06-04 00:03:31,928 | INFO     | did not find any defunct processes belonging to 19267
[2025-06-03 20:03:44] 2025-06-04 00:03:31,928 | INFO     | ready for new job
[2025-06-03 20:03:44] 2025-06-04 00:03:31,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 20:03:44] 2025-06-04 00:03:31,930 | INFO     | **************************************
[2025-06-03 20:03:44] 2025-06-04 00:03:31,930 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 20:03:44] 2025-06-04 00:03:31,930 | INFO     | **************************************
[2025-06-03 20:03:44] 2025-06-04 00:03:31,930 | INFO     | 
[2025-06-03 20:03:44] 2025-06-04 00:03:31,931 | INFO     | architecture information:
[2025-06-03 20:03:44] 2025-06-04 00:03:31,932 | INFO     | executing command: cat /etc/os-release
[2025-06-03 20:03:44] 2025-06-04 00:03:31,949 | INFO     | cat /etc/os-release:
[2025-06-03 20:03:44] NAME="CentOS Linux"
[2025-06-03 20:03:44] VERSION="7 (Core)"
[2025-06-03 20:03:44] ID="centos"
[2025-06-03 20:03:44] ID_LIKE="rhel fedora"
[2025-06-03 20:03:44] VERSION_ID="7"
[2025-06-03 20:03:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 20:03:44] ANSI_COLOR="0;31"
[2025-06-03 20:03:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 20:03:44] HOME_URL="https://www.centos.org/"
[2025-06-03 20:03:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 20:03:44] 
[2025-06-03 20:03:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 20:03:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 20:03:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 20:03:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 20:03:44] 
[2025-06-03 20:03:44] 2025-06-04 00:03:31,950 | INFO     | **************************************
[2025-06-03 20:03:44] 2025-06-04 00:03:32,454 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 20:03:44] 2025-06-04 00:03:32,483 | INFO     | sufficient remaining disk space (18643681280 B)
[2025-06-03 20:03:44] 2025-06-04 00:03:32,483 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 20:03:44] 2025-06-04 00:03:32,483 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 20:03:44] 2025-06-04 00:03:32,484 | INFO     | update_server=False
[2025-06-03 20:03:44] 2025-06-04 00:03:32,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 20:03:44] 2025-06-04 00:03:32,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:03:44] 2025-06-04 00:03:32,562 | INFO     | all job control threads have been joined
[2025-06-03 20:03:44] 2025-06-04 00:03:32,576 | INFO     | PID=12720 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 20:03:44] 2025-06-04 00:03:32,576 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 20:03:44] 2025-06-04 00:03:32,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 20:03:44] 2025-06-04 00:03:32,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 20:03:44] 2025-06-04 00:03:32,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:03:44] 2025-06-04 00:03:32,909 | INFO     | aborting loop
[2025-06-03 20:03:44] 2025-06-04 00:03:32,918 | INFO     | all payload control threads have been joined
[2025-06-03 20:03:44] 2025-06-04 00:03:33,464 | INFO     | all data control threads have been joined
[2025-06-03 20:03:44] 2025-06-04 00:03:33,489 | INFO     | [job] retrieve thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,490 | INFO     | [job] queue monitor thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,495 | INFO     | [payload] validate_post thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,567 | INFO     | [job] control thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 20:03:44] 2025-06-04 00:03:33,882 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,911 | INFO     | [job] job monitor thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:33,924 | INFO     | [payload] control thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,382 | INFO     | [job] validate thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,384 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,422 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,466 | INFO     | [data] control thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,519 | INFO     | [data] copytool_in thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,640 | INFO     | [payload] failed_post thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:34,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 20:03:44] 2025-06-04 00:03:34,982 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:35,621 | INFO     | [data] copytool_out thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:38,741 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 20:03:44] 2025-06-04 00:03:39,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534438692672)>', '<ExcThread(monitor, started 140533326403328)>']
[2025-06-03 20:03:44] 2025-06-04 00:03:39,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 20:03:44] 2025-06-04 00:03:39,603 | INFO     | [monitor] control thread has ended
[2025-06-03 20:03:44] 2025-06-04 00:03:44,360 | INFO     | all workflow threads have been joined
[2025-06-03 20:03:44] 2025-06-04 00:03:44,360 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 20:03:44] 2025-06-04 00:03:44,360 | INFO     | traces error code: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:44,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 20:03:44] 2025-06-04 00:03:44,470 [wrapper] ==== pilot stdout END ====
[2025-06-03 20:03:44] 2025-06-04 00:03:44,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 20:03:44] 2025-06-04 00:03:44,481 [wrapper] pilotpid: 12720
[2025-06-03 20:03:44] 2025-06-04 00:03:44,486 [wrapper] Pilot exit status: 0
[2025-06-03 20:03:44] 2025-06-04 00:03:44,505 [wrapper] pandaids: 6677920859
[2025-06-03 20:03:44] 2025-06-04 00:03:44,549 [wrapper] cleanup supervisor_pilot 15253 12721
[2025-06-03 20:03:44] 2025-06-04 00:03:44,554 [wrapper] Test setup, not cleaning
[2025-06-03 20:03:44] 2025-06-04 00:03:44,559 [wrapper] apfmon messages muted
[2025-06-03 20:03:44] 2025-06-04 00:03:44,564 [wrapper] ==== wrapper stdout END ====
[2025-06-03 20:03:44] 2025-06-04 00:03:44,568 [wrapper] ==== wrapper stderr END ====
[2025-06-03 20:03:44]  *** Error codes and diagnostics ***
[2025-06-03 20:03:44]     "exeErrorCode": 0,
[2025-06-03 20:03:44]     "exeErrorDiag": "",
[2025-06-03 20:03:44]     "pilotErrorCode": 0,
[2025-06-03 20:03:44]     "pilotErrorDiag": "",
[2025-06-03 20:03:44]  *** Listing of results directory ***
[2025-06-03 20:03:44] total 387996
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 14:32 queuedata.json
[2025-06-03 20:03:44] -rwx------ 1 boincer umatlas     37140 Jun  3 14:33 runpilot2-wrapper.sh
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas       100 Jun  3 18:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 20:03:44] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 18:12 run_atlas
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas       105 Jun  3 18:12 job.xml
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas 215010117 Jun  3 18:12 EVNT.45006593._001699.pool.root.1
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 18:12 start_atlas.sh
[2025-06-03 20:03:44] drwxrwx--x 2 boincer umatlas      4096 Jun  3 18:12 shared
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 18:12 input.tar.gz
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas         0 Jun  3 18:12 boinc_lockfile
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas      2524 Jun  3 18:12 pandaJob.out
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas    986869 Jun  3 18:13 agis_schedconf.cvmfs.json
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas   1603667 Jun  3 18:13 agis_ddmendpoints.agis.ALL.json
[2025-06-03 20:03:44] drwx------ 4 boincer umatlas      4096 Jun  3 18:13 pilot3
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas      5823 Jun  3 20:01 init_data.xml
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas        95 Jun  3 20:02 pilot_heartbeat.json
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas 176577245 Jun  3 20:02 HITS.45006595._042369.pool.root.1
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas       529 Jun  3 20:03 boinc_task_state.xml
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas      1050 Jun  3 20:03 memory_monitor_summary.json
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas    336056 Jun  3 20:03 log.45006595._042369.job.log.tgz.1
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas      7749 Jun  3 20:03 heartbeat.json
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 20:03 boinc_mmap_file
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas        27 Jun  3 20:03 wrapper_checkpoint.txt
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas      4670 Jun  3 20:03 pilotlog.txt
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas    611125 Jun  3 20:03 log.45006595._042369.job.log.1
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas       357 Jun  3 20:03 output.list
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas       620 Jun  3 20:03 runtime_log
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas    962560 Jun  3 20:03 result.tar.gz
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas      8654 Jun  3 20:03 runtime_log.err
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas       658 Jun  3 20:03 M0qKDmadlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1ilKDmqAtAKm.diag
[2025-06-03 20:03:44] -rw-r--r-- 1 boincer umatlas     20918 Jun  3 20:03 stderr.txt
[2025-06-03 20:03:44] HITS file was successfully produced:
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas 176577245 Jun  3 20:02 shared/HITS.pool.root.1
[2025-06-03 20:03:44]  *** Contents of shared directory: ***
[2025-06-03 20:03:44] total 383868
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas 215010117 Jun  3 18:12 ATLAS.root_0
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 18:12 start_atlas.sh
[2025-06-03 20:03:44] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 18:12 input.tar.gz
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas 176577245 Jun  3 20:02 HITS.pool.root.1
[2025-06-03 20:03:44] -rw------- 1 boincer umatlas    962560 Jun  3 20:03 result.tar.gz
20:03:46 (9060): run_atlas exited; CPU time 48395.379306
20:03:46 (9060): called boinc_finish(0)

</stderr_txt>
]]>

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