Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:06:10 (6052): wrapper (7.7.26015): starting
09:06:10 (6052): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:06:10] Arguments: --nthreads 8
[2025-06-04 09:06:10] Threads: 8
[2025-06-04 09:06:10] Checking for CVMFS
[2025-06-04 09:06:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:06:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:06:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:06:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:06:12] 2.11.2.0 8450 32898 96148 146771 3 16 16260712 25165824 4293 130560 0 17395139 99.771 20193588 2011 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:06:12] CVMFS is ok
[2025-06-04 09:06:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:06:12] Checking for apptainer binary...
[2025-06-04 09:06:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:06:12] Running /usr/bin/apptainer --version
[2025-06-04 09:06:12] apptainer version 1.3.2-1.el7
[2025-06-04 09:06:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 12:46:26] cg-vwn262.simple-grid.lan
[2025-06-04 12:46:26] apptainer works
[2025-06-04 12:46:26] Set ATHENA_PROC_NUMBER=8
[2025-06-04 12:46:26] Set ATHENA_CORE_NUMBER=8
[2025-06-04 12:46:27] Starting ATLAS job with PandaID=6677862394
[2025-06-04 12:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:05:52]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:05:52] 2025-06-04 14:55:40,176 | INFO     | extracted standard info from prmon json
[2025-06-04 17:05:52] 2025-06-04 14:55:40,176 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:05:52] 2025-06-04 14:55:40,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:05:52] 2025-06-04 14:55:40,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:05:52] 2025-06-04 14:55:40,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:05:52] 2025-06-04 14:55:40,181 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:05:52] 2025-06-04 14:55:40,182 | INFO     | sum of square deviations: 3922276332.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,184 | INFO     | sum of deviations: 121414387434.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,184 | INFO     | mean x: 1749041757.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,185 | INFO     | mean y: 2404280.450643777
[2025-06-04 17:05:52] 2025-06-04 14:55:40,185 | INFO     | -- intersect: -54139327598.58772
[2025-06-04 17:05:52] 2025-06-04 14:55:40,185 | INFO     | intersect: -54139327598.58772
[2025-06-04 17:05:52] 2025-06-04 14:55:40,185 | INFO     | chi2: 7.078087898951646
[2025-06-04 17:05:52] 2025-06-04 14:55:40,186 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,187 | INFO     | sum of deviations: 133844482697.5
[2025-06-04 17:05:52] 2025-06-04 14:55:40,188 | INFO     | mean x: 1749041604.5
[2025-06-04 17:05:52] 2025-06-04 14:55:40,188 | INFO     | mean y: 2411785.3114035088
[2025-06-04 17:05:52] 2025-06-04 14:55:40,188 | INFO     | -- intersect: -63695618529.14095
[2025-06-04 17:05:52] 2025-06-04 14:55:40,188 | INFO     | intersect: -63695618529.14095
[2025-06-04 17:05:52] 2025-06-04 14:55:40,188 | INFO     | chi2: 6.358322882145245
[2025-06-04 17:05:52] 2025-06-04 14:55:40,189 | INFO     | current chi2=6.358322882145245 (change=10.168918881510454 %)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,189 | INFO     | right removable region: 227
[2025-06-04 17:05:52] 2025-06-04 14:55:40,189 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,191 | INFO     | sum of deviations: 41314731449.499985
[2025-06-04 17:05:52] 2025-06-04 14:55:40,191 | INFO     | mean x: 1749041909.5
[2025-06-04 17:05:52] 2025-06-04 14:55:40,191 | INFO     | mean y: 2453674.951754386
[2025-06-04 17:05:52] 2025-06-04 14:55:40,191 | INFO     | -- intersect: -19659675253.924557
[2025-06-04 17:05:52] 2025-06-04 14:55:40,192 | INFO     | intersect: -19659675253.924557
[2025-06-04 17:05:52] 2025-06-04 14:55:40,192 | INFO     | chi2: 2.225358751671572
[2025-06-04 17:05:52] 2025-06-04 14:55:40,192 | INFO     | current chi2=2.225358751671572 (change=68.55988815847884 %)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,193 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,194 | INFO     | sum of deviations: 1149270561.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,199 | INFO     | mean x: 1749042062.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,199 | INFO     | mean y: 2479408.452914798
[2025-06-04 17:05:52] 2025-06-04 14:55:40,199 | INFO     | -- intersect: -582092923.5317019
[2025-06-04 17:05:52] 2025-06-04 14:55:40,199 | INFO     | intersect: -582092923.5317019
[2025-06-04 17:05:52] 2025-06-04 14:55:40,200 | INFO     | chi2: 0.807376438714279
[2025-06-04 17:05:52] 2025-06-04 14:55:40,200 | INFO     | current chi2=0.807376438714279 (change=63.719268270438626 %)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,200 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 17:05:52] 2025-06-04 14:55:40,202 | INFO     | sum of deviations: -2823270381.000002
[2025-06-04 17:05:52] 2025-06-04 14:55:40,202 | INFO     | mean x: 1749042214.5
[2025-06-04 17:05:52] 2025-06-04 14:55:40,202 | INFO     | mean y: 2482073.623853211
[2025-06-04 17:05:52] 2025-06-04 14:55:40,202 | INFO     | -- intersect: 1539624102.6358879
[2025-06-04 17:05:52] 2025-06-04 14:55:40,202 | INFO     | intersect: 1539624102.6358879
[2025-06-04 17:05:52] 2025-06-04 14:55:40,207 | INFO     | chi2: 0.7952070461810219
[2025-06-04 17:05:52] 2025-06-04 14:55:40,207 | INFO     | current chi2=0.7952070461810219 (change=1.5072761539383628 %)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,207 | INFO     | left removable region: 30
[2025-06-04 17:05:52] 2025-06-04 14:55:40,208 | INFO     | sum of square deviations: 2370641658.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,209 | INFO     | sum of deviations: 7769444706.000001
[2025-06-04 17:05:52] 2025-06-04 14:55:40,209 | INFO     | mean x: 1749042489.0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | mean y: 2494583.0203045686
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | -- intersect: -5729746247.588653
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | intersect: -5729746247.588653
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | chi2: 0.0006012574826342997
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | -- intersect: -5729746247.588653
[2025-06-04 17:05:52] 2025-06-04 14:55:40,210 | INFO     | current memory leak: 3.28 B/s (using 197 data points, chi2=0.00)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,211 | INFO     | ..............................
[2025-06-04 17:05:52] 2025-06-04 14:55:40,211 | INFO     | . Timing measurements:
[2025-06-04 17:05:52] 2025-06-04 14:55:40,211 | INFO     | . get job = 0 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . initial setup = 8 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . payload setup = 167 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . stage-in = 0 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . payload execution = 14329 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . stage-out = 3 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | . log creation = 1 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,212 | INFO     | ..............................
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | 
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | job summary report
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | --------------------------------------------------
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | PanDA job id: 6677862394
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | task id: 45006595
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | errors: (none)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | pilot state: finished 
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | transexitcode: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | exeerrorcode: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | exeerrordiag: 
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | exitcode: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | exitmsg: OK
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | cpuconsumptiontime: 51583 s
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | nevents: 400
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | neventsw: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | pid: 13824
[2025-06-04 17:05:52] 2025-06-04 14:55:40,338 | INFO     | pgrp: 13824
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | corecount: 8
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | event service: False
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | sizes: {0: 2405014, 1: 2405213, 12: 2405213, 22: 2405241, 33: 2405269, 44: 2405325, 55: 2405481, 65: 2405509, 76: 2405537, 87: 2405593, 93: 2405827, 98: 2406135, 1
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | --------------------------------------------------
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | 
[2025-06-04 17:05:52] 2025-06-04 14:55:40,339 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 17:05:52] 2025-06-04 14:55:40,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:05:52] 2025-06-04 14:55:40,487 | INFO     | job 6677862394 has completed (purged errors)
[2025-06-04 17:05:52] 2025-06-04 14:55:40,488 | INFO     | overall cleanup function is called
[2025-06-04 17:05:52] 2025-06-04 14:55:41,498 | INFO     | --- collectZombieJob: --- 10, [13824]
[2025-06-04 17:05:52] 2025-06-04 14:55:41,498 | INFO     | zombie collector waiting for pid 13824
[2025-06-04 17:05:52] 2025-06-04 14:55:41,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:05:52] 2025-06-04 14:55:41,498 | INFO     | collected zombie processes
[2025-06-04 17:05:52] 2025-06-04 14:55:41,498 | INFO     | will attempt to kill all subprocesses of pid=13824
[2025-06-04 17:05:52] 2025-06-04 14:55:41,633 | INFO     | process IDs to be killed: [13824] (in reverse order)
[2025-06-04 17:05:52] 2025-06-04 14:55:41,775 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:05:52] 2025-06-04 14:55:41,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:05:52] 2025-06-04 14:55:41,779 | INFO     | did not find any defunct processes belonging to 13824
[2025-06-04 17:05:52] 2025-06-04 14:55:41,783 | INFO     | did not find any defunct processes belonging to 13824
[2025-06-04 17:05:52] 2025-06-04 14:55:41,783 | INFO     | ready for new job
[2025-06-04 17:05:52] 2025-06-04 14:55:41,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:05:52] 2025-06-04 14:55:41,785 | INFO     | **************************************
[2025-06-04 17:05:52] 2025-06-04 14:55:41,786 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:05:52] 2025-06-04 14:55:41,786 | INFO     | **************************************
[2025-06-04 17:05:52] 2025-06-04 14:55:41,786 | INFO     | 
[2025-06-04 17:05:52] 2025-06-04 14:55:41,787 | INFO     | pilot is running in a VM
[2025-06-04 17:05:52] 2025-06-04 14:55:41,787 | INFO     | architecture information:
[2025-06-04 17:05:52] 2025-06-04 14:55:41,788 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:05:52] 2025-06-04 14:55:41,886 | INFO     | cat /etc/os-release:
[2025-06-04 17:05:52] NAME="CentOS Linux"
[2025-06-04 17:05:52] VERSION="7 (Core)"
[2025-06-04 17:05:52] ID="centos"
[2025-06-04 17:05:52] ID_LIKE="rhel fedora"
[2025-06-04 17:05:52] VERSION_ID="7"
[2025-06-04 17:05:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:05:52] ANSI_COLOR="0;31"
[2025-06-04 17:05:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:05:52] HOME_URL="https://www.centos.org/"
[2025-06-04 17:05:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:05:52] 
[2025-06-04 17:05:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:05:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:05:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:05:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:05:52] 
[2025-06-04 17:05:52] 2025-06-04 14:55:41,886 | INFO     | **************************************
[2025-06-04 17:05:52] 2025-06-04 14:55:42,390 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 17:05:52] 2025-06-04 14:55:42,546 | INFO     | sufficient remaining disk space (496599302144 B)
[2025-06-04 17:05:52] 2025-06-04 14:55:42,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:05:52] 2025-06-04 14:55:42,546 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:05:52] 2025-06-04 14:55:42,546 | INFO     | update_server=False
[2025-06-04 17:05:52] 2025-06-04 14:55:42,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:05:52] 2025-06-04 14:55:42,547 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 17:05:52] 2025-06-04 14:55:42,547 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:05:52] 2025-06-04 14:55:42,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:05:52] 2025-06-04 14:55:42,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:05:52] 2025-06-04 14:55:42,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:05:52] 2025-06-04 14:55:42,841 | INFO     | all job control threads have been joined
[2025-06-04 17:05:52] 2025-06-04 14:55:43,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:05:52] 2025-06-04 14:55:43,258 | INFO     | aborting loop
[2025-06-04 17:05:52] 2025-06-04 14:55:43,511 | INFO     | all data control threads have been joined
[2025-06-04 17:05:52] 2025-06-04 14:55:43,552 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,560 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,714 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,749 | INFO     | [job] validate thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,847 | INFO     | [job] control thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,938 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:43,964 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,006 | INFO     | all payload control threads have been joined
[2025-06-04 17:05:52] 2025-06-04 14:55:44,264 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,495 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,517 | INFO     | [data] control thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,563 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,783 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,920 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:44,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:05:52] 2025-06-04 14:55:45,011 | INFO     | [payload] control thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:45,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:05:52] 2025-06-04 14:55:46,360 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:48,969 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:05:52] 2025-06-04 14:55:50,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457563752256)>', '<ExcThread(monitor, started 140456973301504)>']
[2025-06-04 17:05:52] 2025-06-04 14:55:51,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:05:52] 2025-06-04 14:55:51,601 | INFO     | [monitor] control thread has ended
[2025-06-04 17:05:52] 2025-06-04 14:55:55,900 | INFO     | all workflow threads have been joined
[2025-06-04 17:05:52] 2025-06-04 14:55:55,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:05:52] 2025-06-04 14:55:55,900 | INFO     | traces error code: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:55,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:05:52] 2025-06-04 14:55:56,179 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:05:52] 2025-06-04 14:55:56,183 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:05:52] 2025-06-04 14:55:56,200 [wrapper] pilotpid: 5177
[2025-06-04 17:05:52] 2025-06-04 14:55:56,268 [wrapper] Pilot exit status: 0
[2025-06-04 17:05:52] 2025-06-04 14:55:56,712 [wrapper] pandaids: 6677862394
[2025-06-04 17:05:52] 2025-06-04 14:55:57,201 [wrapper] cleanup supervisor_pilot 18344 5178
[2025-06-04 17:05:52] 2025-06-04 14:55:57,256 [wrapper] Test setup, not cleaning
[2025-06-04 17:05:52] 2025-06-04 14:55:57,317 [wrapper] apfmon messages muted
[2025-06-04 17:05:52] 2025-06-04 14:55:57,415 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:05:52] 2025-06-04 14:55:57,508 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:05:52]  *** Error codes and diagnostics ***
[2025-06-04 17:05:52]     "exeErrorCode": 0,
[2025-06-04 17:05:52]     "exeErrorDiag": "",
[2025-06-04 17:05:52]     "pilotErrorCode": 0,
[2025-06-04 17:05:52]     "pilotErrorDiag": "",
[2025-06-04 17:05:52]  *** Listing of results directory ***
[2025-06-04 17:05:52] total 395496
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-04 17:05:52] -rwx------. 1 boinc boinc     37140 Jun  3 19:23 runpilot2-wrapper.sh
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:23 queuedata.json
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:05:52] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:06 run_atlas
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:06 job.xml
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc 214305851 Jun  4 09:06 EVNT.45006593._001618.pool.root.1
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc      6392 Jun  4 09:06 init_data.xml
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:06 start_atlas.sh
[2025-06-04 17:05:52] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:06 shared
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc    508877 Jun  4 09:06 input.tar.gz
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:06 boinc_lockfile
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc      2525 Jun  4 12:46 pandaJob.out
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc    986812 Jun  4 12:49 agis_schedconf.cvmfs.json
[2025-06-04 17:05:52] drwx------. 4 boinc boinc      4096 Jun  4 12:49 pilot3
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc 183542218 Jun  4 16:52 HITS.45006595._040384.pool.root.1
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc       531 Jun  4 16:53 boinc_task_state.xml
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc      1018 Jun  4 16:54 memory_monitor_summary.json
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc   1598969 Jun  4 16:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc    395762 Jun  4 16:54 log.45006595._040384.job.log.tgz.1
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc        95 Jun  4 16:55 pilot_heartbeat.json
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc      7693 Jun  4 16:55 heartbeat.json
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc      4540 Jun  4 16:55 pilotlog.txt
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc   1267452 Jun  4 16:55 log.45006595._040384.job.log.1
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc       357 Jun  4 16:55 output.list
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc       620 Jun  4 16:55 runtime_log
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc   1679360 Jun  4 16:55 result.tar.gz
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc      8673 Jun  4 16:55 runtime_log.err
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc       657 Jun  4 16:55 97FLDmWXkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuLlKDmYQxrjn.diag
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc      8192 Jun  4 17:05 boinc_mmap_file
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc        28 Jun  4 17:05 wrapper_checkpoint.txt
[2025-06-04 17:05:52] -rw-r--r--. 1 boinc boinc     20507 Jun  4 17:05 stderr.txt
[2025-06-04 17:05:52] HITS file was successfully produced:
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc 183542218 Jun  4 16:52 shared/HITS.pool.root.1
[2025-06-04 17:05:52]  *** Contents of shared directory: ***
[2025-06-04 17:05:52] total 390684
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc 214305851 Jun  4 09:06 ATLAS.root_0
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:06 start_atlas.sh
[2025-06-04 17:05:52] -rw-r--r--. 2 boinc boinc    508877 Jun  4 09:06 input.tar.gz
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc 183542218 Jun  4 16:52 HITS.pool.root.1
[2025-06-04 17:05:52] -rw-------. 1 boinc boinc   1679360 Jun  4 16:55 result.tar.gz
17:05:54 (6052): run_atlas exited; CPU time 51790.906411
17:05:54 (6052): called boinc_finish(0)

</stderr_txt>
]]>

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