Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:51:32 (1791): wrapper (7.7.26015): starting
07:51:32 (1791): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:51:32] Arguments: --nthreads 8
[2025-06-04 07:51:32] Threads: 8
[2025-06-04 07:51:32] Checking for CVMFS
[2025-06-04 07:51:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:51:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:51:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:51:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:51:35] 2.11.2.0 28231 32799 88588 146769 3 60 19527584 25165824 3523 130560 0 17451803 99.798 19586874 2222 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 07:51:35] CVMFS is ok
[2025-06-04 07:51:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:51:35] Checking for apptainer binary...
[2025-06-04 07:51:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:51:35] Running /usr/bin/apptainer --version
[2025-06-04 07:51:35] apptainer version 1.3.2-1.el7
[2025-06-04 07:51:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:51:51] cg-vwn282.simple-grid.lan
[2025-06-04 07:51:51] apptainer works
[2025-06-04 07:51:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:51:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:51:51] Starting ATLAS job with PandaID=6677920849
[2025-06-04 07:51:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:57:42]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:57:42] 2025-06-04 09:46:06,103 | INFO     | extracted standard info from prmon json
[2025-06-04 11:57:42] 2025-06-04 09:46:06,103 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:57:42] 2025-06-04 09:46:06,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:57:42] 2025-06-04 09:46:06,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:57:42] 2025-06-04 09:46:06,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:57:42] 2025-06-04 09:46:06,109 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:57:42] 2025-06-04 09:46:06,109 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,111 | INFO     | sum of deviations: 103128663721.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,111 | INFO     | mean x: 1749023627.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,111 | INFO     | mean y: 2403387.0321100918
[2025-06-04 11:57:42] 2025-06-04 09:46:06,111 | INFO     | -- intersect: -56145856392.57165
[2025-06-04 11:57:42] 2025-06-04 09:46:06,112 | INFO     | intersect: -56145856392.57165
[2025-06-04 11:57:42] 2025-06-04 09:46:06,112 | INFO     | chi2: 7.16106170455664
[2025-06-04 11:57:42] 2025-06-04 09:46:06,112 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,114 | INFO     | sum of deviations: 114895552528.00002
[2025-06-04 11:57:42] 2025-06-04 09:46:06,114 | INFO     | mean x: 1749023475.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,114 | INFO     | mean y: 2411505.117370892
[2025-06-04 11:57:42] 2025-06-04 09:46:06,114 | INFO     | -- intersect: -67061857444.07157
[2025-06-04 11:57:42] 2025-06-04 09:46:06,114 | INFO     | intersect: -67061857444.07157
[2025-06-04 11:57:42] 2025-06-04 09:46:06,115 | INFO     | chi2: 6.445495903436265
[2025-06-04 11:57:42] 2025-06-04 09:46:06,115 | INFO     | current chi2=6.445495903436265 (change=9.9924540611772 %)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,115 | INFO     | right removable region: 212
[2025-06-04 11:57:42] 2025-06-04 09:46:06,115 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,118 | INFO     | sum of deviations: 29089039744.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,118 | INFO     | mean x: 1749023780.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,119 | INFO     | mean y: 2455607.840375587
[2025-06-04 11:57:42] 2025-06-04 09:46:06,119 | INFO     | -- intersect: -16976752743.87002
[2025-06-04 11:57:42] 2025-06-04 09:46:06,119 | INFO     | intersect: -16976752743.87002
[2025-06-04 11:57:42] 2025-06-04 09:46:06,119 | INFO     | chi2: 2.3574016446338417
[2025-06-04 11:57:42] 2025-06-04 09:46:06,119 | INFO     | current chi2=2.3574016446338417 (change=67.08027745196206 %)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,120 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,121 | INFO     | sum of deviations: -10947774035.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,121 | INFO     | mean x: 1749023932.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,122 | INFO     | mean y: 2485093.1875
[2025-06-04 11:57:42] 2025-06-04 09:46:06,122 | INFO     | -- intersect: 6864682170.355506
[2025-06-04 11:57:42] 2025-06-04 09:46:06,122 | INFO     | intersect: 6864682170.355506
[2025-06-04 11:57:42] 2025-06-04 09:46:06,122 | INFO     | chi2: 0.8989488720179294
[2025-06-04 11:57:42] 2025-06-04 09:46:06,122 | INFO     | current chi2=0.8989488720179294 (change=61.86696170064153 %)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,123 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,124 | INFO     | sum of deviations: -19566945539.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,124 | INFO     | mean x: 1749024085.0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,124 | INFO     | mean y: 2491736.3645320195
[2025-06-04 11:57:42] 2025-06-04 09:46:06,128 | INFO     | -- intersect: 13196076982.251871
[2025-06-04 11:57:42] 2025-06-04 09:46:06,128 | INFO     | intersect: 13196076982.251871
[2025-06-04 11:57:42] 2025-06-04 09:46:06,128 | INFO     | chi2: 0.8107564682590794
[2025-06-04 11:57:42] 2025-06-04 09:46:06,129 | INFO     | current chi2=0.8107564682590794 (change=9.810613985295815 %)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,129 | INFO     | left removable region: 30
[2025-06-04 11:57:42] 2025-06-04 09:46:06,129 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,130 | INFO     | sum of deviations: -1889490615.9999993
[2025-06-04 11:57:42] 2025-06-04 09:46:06,130 | INFO     | mean x: 1749024359.5
[2025-06-04 11:57:42] 2025-06-04 09:46:06,130 | INFO     | mean y: 2499036.3296703296
[2025-06-04 11:57:42] 2025-06-04 09:46:06,130 | INFO     | -- intersect: 1770412979.260697
[2025-06-04 11:57:42] 2025-06-04 09:46:06,131 | INFO     | intersect: 1770412979.260697
[2025-06-04 11:57:42] 2025-06-04 09:46:06,131 | INFO     | chi2: 0.012589118905174366
[2025-06-04 11:57:42] 2025-06-04 09:46:06,131 | INFO     | -- intersect: 1770412979.260697
[2025-06-04 11:57:42] 2025-06-04 09:46:06,131 | INFO     | current memory leak: -1.01 B/s (using 182 data points, chi2=0.01)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | ..............................
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . Timing measurements:
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . get job = 0 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . initial setup = 10 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . payload setup = 169 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . stage-in = 0 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . payload execution = 13412 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . stage-out = 4 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,132 | INFO     | . log creation = 0 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,133 | INFO     | ..............................
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | 
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | job summary report
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | --------------------------------------------------
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | PanDA job id: 6677920849
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | task id: 45006595
[2025-06-04 11:57:42] 2025-06-04 09:46:06,287 | INFO     | errors: (none)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | pilot state: finished 
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | transexitcode: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | exeerrorcode: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | exeerrordiag: 
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | exitcode: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | exitmsg: OK
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | cpuconsumptiontime: 49833 s
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | nevents: 400
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | neventsw: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:06,288 | INFO     | pid: 24085
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | pgrp: 24085
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | corecount: 8
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | event service: False
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 13: 2405240, 24: 2405296, 34: 2405324, 45: 2405480, 56: 2405508, 66: 2405536, 77: 2405564, 88: 2405620, 90: 2406134, 98
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | --------------------------------------------------
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | 
[2025-06-04 11:57:42] 2025-06-04 09:46:06,289 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-04 11:57:42] 2025-06-04 09:46:06,762 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,762 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,762 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,762 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,763 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | job 6677920849 has completed (purged errors)
[2025-06-04 11:57:42] 2025-06-04 09:46:06,764 | INFO     | overall cleanup function is called
[2025-06-04 11:57:42] 2025-06-04 09:46:07,774 | INFO     | --- collectZombieJob: --- 10, [24085]
[2025-06-04 11:57:42] 2025-06-04 09:46:07,774 | INFO     | zombie collector waiting for pid 24085
[2025-06-04 11:57:42] 2025-06-04 09:46:07,774 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:57:42] 2025-06-04 09:46:07,774 | INFO     | collected zombie processes
[2025-06-04 11:57:42] 2025-06-04 09:46:07,774 | INFO     | will attempt to kill all subprocesses of pid=24085
[2025-06-04 11:57:42] 2025-06-04 09:46:07,924 | INFO     | process IDs to be killed: [24085] (in reverse order)
[2025-06-04 11:57:42] 2025-06-04 09:46:08,666 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:57:42] 2025-06-04 09:46:08,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:57:42] 2025-06-04 09:46:08,670 | INFO     | did not find any defunct processes belonging to 24085
[2025-06-04 11:57:42] 2025-06-04 09:46:08,679 | INFO     | did not find any defunct processes belonging to 24085
[2025-06-04 11:57:42] 2025-06-04 09:46:08,680 | INFO     | ready for new job
[2025-06-04 11:57:42] 2025-06-04 09:46:08,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:57:42] 2025-06-04 09:46:08,682 | INFO     | **************************************
[2025-06-04 11:57:42] 2025-06-04 09:46:08,682 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:57:42] 2025-06-04 09:46:08,682 | INFO     | **************************************
[2025-06-04 11:57:42] 2025-06-04 09:46:08,682 | INFO     | 
[2025-06-04 11:57:42] 2025-06-04 09:46:08,683 | INFO     | pilot is running in a VM
[2025-06-04 11:57:42] 2025-06-04 09:46:08,683 | INFO     | architecture information:
[2025-06-04 11:57:42] 2025-06-04 09:46:08,696 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:57:42] 2025-06-04 09:46:08,962 | INFO     | cat /etc/os-release:
[2025-06-04 11:57:42] NAME="CentOS Linux"
[2025-06-04 11:57:42] VERSION="7 (Core)"
[2025-06-04 11:57:42] ID="centos"
[2025-06-04 11:57:42] ID_LIKE="rhel fedora"
[2025-06-04 11:57:42] VERSION_ID="7"
[2025-06-04 11:57:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:57:42] ANSI_COLOR="0;31"
[2025-06-04 11:57:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:57:42] HOME_URL="https://www.centos.org/"
[2025-06-04 11:57:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:57:42] 
[2025-06-04 11:57:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:57:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:57:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:57:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:57:42] 
[2025-06-04 11:57:42] 2025-06-04 09:46:08,963 | INFO     | **************************************
[2025-06-04 11:57:42] 2025-06-04 09:46:09,466 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-04 11:57:42] 2025-06-04 09:46:09,612 | INFO     | sufficient remaining disk space (496973643776 B)
[2025-06-04 11:57:42] 2025-06-04 09:46:09,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:57:42] 2025-06-04 09:46:09,612 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:57:42] 2025-06-04 09:46:09,612 | INFO     | update_server=False
[2025-06-04 11:57:42] 2025-06-04 09:46:09,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:57:42] 2025-06-04 09:46:09,614 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:57:42] 2025-06-04 09:46:09,614 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:57:42] 2025-06-04 09:46:09,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:57:42] 2025-06-04 09:46:09,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:57:42] 2025-06-04 09:46:09,861 | INFO     | all job control threads have been joined
[2025-06-04 11:57:42] 2025-06-04 09:46:09,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:57:42] 2025-06-04 09:46:09,983 | INFO     | all data control threads have been joined
[2025-06-04 11:57:42] 2025-06-04 09:46:10,191 | INFO     | all payload control threads have been joined
[2025-06-04 11:57:42] 2025-06-04 09:46:10,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:57:42] 2025-06-04 09:46:10,509 | INFO     | aborting loop
[2025-06-04 11:57:42] 2025-06-04 09:46:10,620 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:10,652 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:10,867 | INFO     | [job] control thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:10,989 | INFO     | [data] control thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,098 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,197 | INFO     | [payload] control thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,249 | INFO     | [job] validate thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:57:42] 2025-06-04 09:46:11,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:57:42] 2025-06-04 09:46:11,333 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,478 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,514 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,801 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,899 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:11,921 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:12,085 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:12,307 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:15,338 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:57:42] 2025-06-04 09:46:16,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993666340672)>', '<ExcThread(monitor, started 139993217480448)>']
[2025-06-04 11:57:42] 2025-06-04 09:46:16,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:57:42] 2025-06-04 09:46:16,657 | INFO     | [monitor] control thread has ended
[2025-06-04 11:57:42] 2025-06-04 09:46:21,566 | INFO     | all workflow threads have been joined
[2025-06-04 11:57:42] 2025-06-04 09:46:21,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:57:42] 2025-06-04 09:46:21,566 | INFO     | traces error code: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:21,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:57:42] 2025-06-04 09:46:21,943 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:57:42] 2025-06-04 09:46:22,007 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:57:42] 2025-06-04 09:46:22,102 [wrapper] pilotpid: 9536
[2025-06-04 11:57:42] 2025-06-04 09:46:22,190 [wrapper] Pilot exit status: 0
[2025-06-04 11:57:42] 2025-06-04 09:46:22,709 [wrapper] pandaids: 6677920849
[2025-06-04 11:57:42] 2025-06-04 09:46:23,628 [wrapper] cleanup supervisor_pilot 30374 9537
[2025-06-04 11:57:42] 2025-06-04 09:46:23,685 [wrapper] Test setup, not cleaning
[2025-06-04 11:57:42] 2025-06-04 09:46:23,735 [wrapper] apfmon messages muted
[2025-06-04 11:57:42] 2025-06-04 09:46:23,817 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:57:42] 2025-06-04 09:46:23,897 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:57:42]  *** Error codes and diagnostics ***
[2025-06-04 11:57:42]     "exeErrorCode": 0,
[2025-06-04 11:57:42]     "exeErrorDiag": "",
[2025-06-04 11:57:42]     "pilotErrorCode": 0,
[2025-06-04 11:57:42]     "pilotErrorDiag": "",
[2025-06-04 11:57:42]  *** Listing of results directory ***
[2025-06-04 11:57:42] total 390952
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:32 queuedata.json
[2025-06-04 11:57:42] -rwx------. 1 boinc boinc     37140 Jun  3 20:33 runpilot2-wrapper.sh
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:57:42] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:51 run_atlas
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:51 job.xml
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc      6391 Jun  4 07:51 init_data.xml
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc 215010117 Jun  4 07:51 EVNT.45006593._001699.pool.root.1
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:51 start_atlas.sh
[2025-06-04 11:57:42] drwxrwx--x. 2 boinc boinc        68 Jun  4 07:51 shared
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc    508878 Jun  4 07:51 input.tar.gz
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:51 boinc_lockfile
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc      2525 Jun  4 07:51 pandaJob.out
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc    986745 Jun  4 07:54 agis_schedconf.cvmfs.json
[2025-06-04 11:57:42] drwx------. 4 boinc boinc      4096 Jun  4 07:55 pilot3
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc 178370391 Jun  4 11:43 HITS.45006595._042359.pool.root.1
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc       531 Jun  4 11:43 boinc_task_state.xml
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc      1015 Jun  4 11:44 memory_monitor_summary.json
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc   1603667 Jun  4 11:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc    382953 Jun  4 11:44 log.45006595._042359.job.log.tgz.1
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc        95 Jun  4 11:45 pilot_heartbeat.json
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc      7689 Jun  4 11:46 heartbeat.json
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc      4539 Jun  4 11:46 pilotlog.txt
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc   1182254 Jun  4 11:46 log.45006595._042359.job.log.1
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc       357 Jun  4 11:46 output.list
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:46 runtime_log
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc   1587200 Jun  4 11:46 result.tar.gz
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc      8659 Jun  4 11:46 runtime_log.err
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc       657 Jun  4 11:46 2uJKDmGdlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTilKDmt2zqTo.diag
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:57 boinc_mmap_file
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:57 wrapper_checkpoint.txt
[2025-06-04 11:57:42] -rw-r--r--. 1 boinc boinc     20492 Jun  4 11:57 stderr.txt
[2025-06-04 11:57:42] HITS file was successfully produced:
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc 178370391 Jun  4 11:43 shared/HITS.pool.root.1
[2025-06-04 11:57:42]  *** Contents of shared directory: ***
[2025-06-04 11:57:42] total 386232
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc 215010117 Jun  4 07:51 ATLAS.root_0
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:51 start_atlas.sh
[2025-06-04 11:57:42] -rw-r--r--. 2 boinc boinc    508878 Jun  4 07:51 input.tar.gz
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc 178370391 Jun  4 11:43 HITS.pool.root.1
[2025-06-04 11:57:42] -rw-------. 1 boinc boinc   1587200 Jun  4 11:46 result.tar.gz
11:57:44 (1791): run_atlas exited; CPU time 50018.372922
11:57:44 (1791): called boinc_finish(0)

</stderr_txt>
]]>

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