Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:44:38 (9884): wrapper (7.7.26015): starting
07:44:38 (9884): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:44:38] Arguments: --nthreads 8
[2025-06-04 07:44:38] Threads: 8
[2025-06-04 07:44:38] Checking for CVMFS
[2025-06-04 07:44:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:44:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:44:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:44:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:44:39] 2.11.2.0 12147 32804 100096 146769 2 154 23733952 25165825 3247 130560 0 17617651 99.715 20687475 2108 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 07:44:39] CVMFS is ok
[2025-06-04 07:44:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:44:39] Checking for apptainer binary...
[2025-06-04 07:44:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:44:39] Running /usr/bin/apptainer --version
[2025-06-04 07:44:40] apptainer version 1.3.2-1.el7
[2025-06-04 07:44:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:44:41] cg-vwn304.simple-grid.lan
[2025-06-04 07:44:41] apptainer works
[2025-06-04 07:44:41] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:44:41] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:44:41] Starting ATLAS job with PandaID=6669134248
[2025-06-04 07:44:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:48:22]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:48:22] 2025-06-04 10:46:33,094 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6669134248/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,095 | INFO     | extracted standard info from prmon json
[2025-06-04 12:48:22] 2025-06-04 10:46:33,095 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:48:22] 2025-06-04 10:46:33,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:48:22] 2025-06-04 10:46:33,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:48:22] 2025-06-04 10:46:33,099 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:48:22] 2025-06-04 10:46:33,105 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:48:22] 2025-06-04 10:46:33,106 | INFO     | sum of square deviations: 7879803557.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,109 | INFO     | sum of deviations: 14852223788.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,109 | INFO     | mean x: 1749024899.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,110 | INFO     | mean y: 2486234.5136054424
[2025-06-04 12:48:22] 2025-06-04 10:46:33,110 | INFO     | -- intersect: -3294158031.9932528
[2025-06-04 12:48:22] 2025-06-04 10:46:33,110 | INFO     | intersect: -3294158031.9932528
[2025-06-04 12:48:22] 2025-06-04 10:46:33,110 | INFO     | chi2: 2.7012169078467974
[2025-06-04 12:48:22] 2025-06-04 10:46:33,111 | INFO     | sum of square deviations: 7484568240.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,113 | INFO     | sum of deviations: 34526210754.999985
[2025-06-04 12:48:22] 2025-06-04 10:46:33,114 | INFO     | mean x: 1749024747.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,114 | INFO     | mean y: 2493719.3425605535
[2025-06-04 12:48:22] 2025-06-04 10:46:33,114 | INFO     | -- intersect: -8065733477.505406
[2025-06-04 12:48:22] 2025-06-04 10:46:33,114 | INFO     | intersect: -8065733477.505406
[2025-06-04 12:48:22] 2025-06-04 10:46:33,115 | INFO     | chi2: 1.8920521996442023
[2025-06-04 12:48:22] 2025-06-04 10:46:33,115 | INFO     | current chi2=1.8920521996442023 (change=29.95556209692168 %)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,115 | INFO     | sum of square deviations: 7102775035.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,118 | INFO     | sum of deviations: 33891789557.500008
[2025-06-04 12:48:22] 2025-06-04 10:46:33,118 | INFO     | mean x: 1749024594.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,118 | INFO     | mean y: 2493465.9119718308
[2025-06-04 12:48:22] 2025-06-04 10:46:33,118 | INFO     | -- intersect: -8343198632.681403
[2025-06-04 12:48:22] 2025-06-04 10:46:33,118 | INFO     | intersect: -8343198632.681403
[2025-06-04 12:48:22] 2025-06-04 10:46:33,119 | INFO     | chi2: 1.892839322832542
[2025-06-04 12:48:22] 2025-06-04 10:46:33,119 | INFO     | current chi2=1.892839322832542 (change=-0.041601557741781106 %)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,119 | INFO     | right removable region: 283
[2025-06-04 12:48:22] 2025-06-04 10:46:33,120 | INFO     | sum of square deviations: 7484568240.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,122 | INFO     | sum of deviations: -39408302750.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,123 | INFO     | mean x: 1749025052.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,123 | INFO     | mean y: 2507044.2283737026
[2025-06-04 12:48:22] 2025-06-04 10:46:33,123 | INFO     | -- intersect: 9211603221.371452
[2025-06-04 12:48:22] 2025-06-04 10:46:33,123 | INFO     | intersect: 9211603221.371452
[2025-06-04 12:48:22] 2025-06-04 10:46:33,123 | INFO     | chi2: 0.976536948141245
[2025-06-04 12:48:22] 2025-06-04 10:46:33,124 | INFO     | current chi2=0.976536948141245 (change=63.848258712416204 %)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,124 | INFO     | sum of square deviations: 7102775035.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,127 | INFO     | sum of deviations: -38457589903.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,127 | INFO     | mean x: 1749025204.5
[2025-06-04 12:48:22] 2025-06-04 10:46:33,127 | INFO     | mean y: 2506643.3485915493
[2025-06-04 12:48:22] 2025-06-04 10:46:33,127 | INFO     | -- intersect: 9472508679.749313
[2025-06-04 12:48:22] 2025-06-04 10:46:33,127 | INFO     | intersect: 9472508679.749313
[2025-06-04 12:48:22] 2025-06-04 10:46:33,128 | INFO     | chi2: 0.9615498853069337
[2025-06-04 12:48:22] 2025-06-04 10:46:33,128 | INFO     | current chi2=0.9615498853069337 (change=1.5347153902202963 %)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,128 | INFO     | left removable region: 20
[2025-06-04 12:48:22] 2025-06-04 10:46:33,128 | INFO     | sum of square deviations: 5640782972.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,131 | INFO     | sum of deviations: 732567361.0000025
[2025-06-04 12:48:22] 2025-06-04 10:46:33,131 | INFO     | mean x: 1749025174.0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,131 | INFO     | mean y: 2506243.7262357413
[2025-06-04 12:48:22] 2025-06-04 10:46:33,131 | INFO     | -- intersect: -224639307.2371368
[2025-06-04 12:48:22] 2025-06-04 10:46:33,131 | INFO     | intersect: -224639307.2371368
[2025-06-04 12:48:22] 2025-06-04 10:46:33,132 | INFO     | chi2: 0.05786536713934348
[2025-06-04 12:48:22] 2025-06-04 10:46:33,132 | INFO     | -- intersect: -224639307.2371368
[2025-06-04 12:48:22] 2025-06-04 10:46:33,132 | INFO     | current memory leak: 0.13 B/s (using 263 data points, chi2=0.06)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,133 | INFO     | ..............................
[2025-06-04 12:48:22] 2025-06-04 10:46:33,133 | INFO     | . Timing measurements:
[2025-06-04 12:48:22] 2025-06-04 10:46:33,133 | INFO     | . get job = 0 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,133 | INFO     | . initial setup = 2 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | . payload setup = 15 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | . stage-in = 0 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | . payload execution = 17956 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | . stage-out = 3 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | . log creation = 1 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,134 | INFO     | ..............................
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | 
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | job summary report
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | --------------------------------------------------
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | PanDA job id: 6669134248
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | task id: 44871837
[2025-06-04 12:48:22] 2025-06-04 10:46:33,303 | INFO     | errors: (none)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | pilot state: finished 
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | transexitcode: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | exeerrorcode: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | exeerrordiag: 
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | exitcode: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | exitmsg: OK
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | cpuconsumptiontime: 69272 s
[2025-06-04 12:48:22] 2025-06-04 10:46:33,304 | INFO     | nevents: 400
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | neventsw: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | pid: 22200
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | pgrp: 22200
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | corecount: 8
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | event service: False
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405496, 17977: 2436919, 17981: 2445860, 17984: 2445916, 18071: 2446214}
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | --------------------------------------------------
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | 
[2025-06-04 12:48:22] 2025-06-04 10:46:33,305 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-04 12:48:22] 2025-06-04 10:46:33,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,551 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:48:22] 2025-06-04 10:46:33,551 | INFO     | job 6669134248 has completed (purged errors)
[2025-06-04 12:48:22] 2025-06-04 10:46:33,551 | INFO     | overall cleanup function is called
[2025-06-04 12:48:22] 2025-06-04 10:46:34,561 | INFO     | --- collectZombieJob: --- 10, [22200]
[2025-06-04 12:48:22] 2025-06-04 10:46:34,561 | INFO     | zombie collector waiting for pid 22200
[2025-06-04 12:48:22] 2025-06-04 10:46:34,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:48:22] 2025-06-04 10:46:34,561 | INFO     | collected zombie processes
[2025-06-04 12:48:22] 2025-06-04 10:46:34,561 | INFO     | will attempt to kill all subprocesses of pid=22200
[2025-06-04 12:48:22] 2025-06-04 10:46:34,673 | INFO     | process IDs to be killed: [22200] (in reverse order)
[2025-06-04 12:48:22] 2025-06-04 10:46:35,613 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:48:22] 2025-06-04 10:46:35,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:48:22] 2025-06-04 10:46:35,617 | INFO     | did not find any defunct processes belonging to 22200
[2025-06-04 12:48:22] 2025-06-04 10:46:35,621 | INFO     | did not find any defunct processes belonging to 22200
[2025-06-04 12:48:22] 2025-06-04 10:46:35,622 | INFO     | ready for new job
[2025-06-04 12:48:22] 2025-06-04 10:46:35,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:48:22] 2025-06-04 10:46:35,624 | INFO     | **************************************
[2025-06-04 12:48:22] 2025-06-04 10:46:35,624 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:48:22] 2025-06-04 10:46:35,625 | INFO     | **************************************
[2025-06-04 12:48:22] 2025-06-04 10:46:35,625 | INFO     | 
[2025-06-04 12:48:22] 2025-06-04 10:46:35,625 | INFO     | pilot is running in a VM
[2025-06-04 12:48:22] 2025-06-04 10:46:35,625 | INFO     | architecture information:
[2025-06-04 12:48:22] 2025-06-04 10:46:35,626 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:48:22] 2025-06-04 10:46:35,791 | INFO     | cat /etc/os-release:
[2025-06-04 12:48:22] NAME="CentOS Linux"
[2025-06-04 12:48:22] VERSION="7 (Core)"
[2025-06-04 12:48:22] ID="centos"
[2025-06-04 12:48:22] ID_LIKE="rhel fedora"
[2025-06-04 12:48:22] VERSION_ID="7"
[2025-06-04 12:48:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:48:22] ANSI_COLOR="0;31"
[2025-06-04 12:48:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:48:22] HOME_URL="https://www.centos.org/"
[2025-06-04 12:48:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:48:22] 
[2025-06-04 12:48:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:48:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:48:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:48:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:48:22] 
[2025-06-04 12:48:22] 2025-06-04 10:46:35,794 | INFO     | **************************************
[2025-06-04 12:48:22] 2025-06-04 10:46:36,297 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-04 12:48:22] 2025-06-04 10:46:36,573 | INFO     | sufficient remaining disk space (497007198208 B)
[2025-06-04 12:48:22] 2025-06-04 10:46:36,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:48:22] 2025-06-04 10:46:36,574 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:48:22] 2025-06-04 10:46:36,574 | INFO     | update_server=False
[2025-06-04 12:48:22] 2025-06-04 10:46:36,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:48:22] 2025-06-04 10:46:36,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:48:22] 2025-06-04 10:46:36,699 | INFO     | all job control threads have been joined
[2025-06-04 12:48:22] 2025-06-04 10:46:37,000 | INFO     | all payload control threads have been joined
[2025-06-04 12:48:22] 2025-06-04 10:46:37,035 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:48:22] 2025-06-04 10:46:37,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:48:22] 2025-06-04 10:46:37,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:48:22] 2025-06-04 10:46:37,501 | INFO     | all data control threads have been joined
[2025-06-04 12:48:22] 2025-06-04 10:46:37,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:48:22] 2025-06-04 10:46:37,537 | INFO     | aborting loop
[2025-06-04 12:48:22] 2025-06-04 10:46:37,580 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:37,705 | INFO     | [job] control thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:37,793 | INFO     | [job] validate thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:37,991 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:48:22] 2025-06-04 10:46:38,006 | INFO     | [payload] control thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,020 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,311 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:48:22] 2025-06-04 10:46:38,362 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,444 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,507 | INFO     | [data] control thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,543 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,582 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,792 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:38,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:39,063 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:39,323 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:42,000 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:48:22] 2025-06-04 10:46:43,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041598723904)>', '<ExcThread(monitor, started 140041007384320)>']
[2025-06-04 12:48:22] 2025-06-04 10:46:44,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:48:22] 2025-06-04 10:46:44,078 | INFO     | [monitor] control thread has ended
[2025-06-04 12:48:22] 2025-06-04 10:46:48,516 | INFO     | all workflow threads have been joined
[2025-06-04 12:48:22] 2025-06-04 10:46:48,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:48:22] 2025-06-04 10:46:48,516 | INFO     | traces error code: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:48,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:48:22] 2025-06-04 10:46:48,898 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:48:22] 2025-06-04 10:46:48,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:48:22] 2025-06-04 10:46:49,051 [wrapper] pilotpid: 14360
[2025-06-04 12:48:22] 2025-06-04 10:46:49,144 [wrapper] Pilot exit status: 0
[2025-06-04 12:48:22] 2025-06-04 10:46:49,529 [wrapper] pandaids: 6669134248
[2025-06-04 12:48:22] 2025-06-04 10:46:50,404 [wrapper] cleanup supervisor_pilot 16885 14361
[2025-06-04 12:48:22] 2025-06-04 10:46:50,471 [wrapper] Test setup, not cleaning
[2025-06-04 12:48:22] 2025-06-04 10:46:50,576 [wrapper] apfmon messages muted
[2025-06-04 12:48:22] 2025-06-04 10:46:50,676 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:48:22] 2025-06-04 10:46:50,772 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:48:22]  *** Error codes and diagnostics ***
[2025-06-04 12:48:22]     "exeErrorCode": 0,
[2025-06-04 12:48:22]     "exeErrorDiag": "",
[2025-06-04 12:48:22]     "pilotErrorCode": 0,
[2025-06-04 12:48:22]     "pilotErrorDiag": "",
[2025-06-04 12:48:22]  *** Listing of results directory ***
[2025-06-04 12:48:22] total 410472
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc    495897 May 29 04:05 pilot3.tar.gz
[2025-06-04 12:48:22] -rwx------. 1 boinc boinc     37140 May 29 04:26 runpilot2-wrapper.sh
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc      5111 May 29 04:26 queuedata.json
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:48:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:44 run_atlas
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:44 job.xml
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc      6391 Jun  4 07:44 init_data.xml
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc 222851086 Jun  4 07:44 EVNT.44871834._003640.pool.root.1
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 12:48:22] drwxrwx--x. 2 boinc boinc        68 Jun  4 07:44 shared
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 07:44 input.tar.gz
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:44 boinc_lockfile
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc      2559 Jun  4 07:44 pandaJob.out
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc    986745 Jun  4 07:45 agis_schedconf.cvmfs.json
[2025-06-04 12:48:22] drwx------. 4 boinc boinc      4096 Jun  4 07:45 pilot3
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc 189721054 Jun  4 12:43 HITS.44871837._093649.pool.root.1
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc       531 Jun  4 12:44 boinc_task_state.xml
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc      1018 Jun  4 12:44 memory_monitor_summary.json
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc   1603667 Jun  4 12:45 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc    423432 Jun  4 12:45 log.44871837._093649.job.log.tgz.1
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc        95 Jun  4 12:46 pilot_heartbeat.json
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc      7687 Jun  4 12:46 heartbeat.json
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc      4416 Jun  4 12:46 pilotlog.txt
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc   1542101 Jun  4 12:46 log.44871837._093649.job.log.1
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc       357 Jun  4 12:46 output.list
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc       620 Jun  4 12:46 runtime_log
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc   1986560 Jun  4 12:46 result.tar.gz
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc      8659 Jun  4 12:46 runtime_log.err
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc       656 Jun  4 12:46 eCyMDmg9he7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlbdKDmxBXqNn.diag
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc      8192 Jun  4 12:48 boinc_mmap_file
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc        28 Jun  4 12:48 wrapper_checkpoint.txt
[2025-06-04 12:48:22] -rw-r--r--. 1 boinc boinc     20475 Jun  4 12:48 stderr.txt
[2025-06-04 12:48:22] HITS file was successfully produced:
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc 189721054 Jun  4 12:43 shared/HITS.pool.root.1
[2025-06-04 12:48:22]  *** Contents of shared directory: ***
[2025-06-04 12:48:22] total 405364
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc 222851086 Jun  4 07:44 ATLAS.root_0
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 12:48:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 07:44 input.tar.gz
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc 189721054 Jun  4 12:43 HITS.pool.root.1
[2025-06-04 12:48:22] -rw-------. 1 boinc boinc   1986560 Jun  4 12:46 result.tar.gz
12:48:24 (9884): run_atlas exited; CPU time 69505.670801
12:48:24 (9884): called boinc_finish(0)

</stderr_txt>
]]>

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