Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:19:42 (3800214): wrapper (7.7.26015): starting
11:19:42 (3800214): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 11:19:42] Arguments: --nthreads 4
[2025-06-05 11:19:42] Threads: 4
[2025-06-05 11:19:42] Checking for CVMFS
[2025-06-05 11:19:42] No cvmfs_config command found, will try listing directly
[2025-06-05 11:19:42] CVMFS is ok
[2025-06-05 11:19:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:19:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:19:42] Further information can be found at the LHC@home message board.
[2025-06-05 11:19:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:19:42] Checking for apptainer binary...
[2025-06-05 11:19:42] which: no apptainer in ((null))
[2025-06-05 11:19:42] apptainer is not installed, using version from CVMFS
[2025-06-05 11:19:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:19:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-06-05 11:19:42] apptainer works
[2025-06-05 11:19:42] Set ATHENA_PROC_NUMBER=4
[2025-06-05 11:19:42] Set ATHENA_CORE_NUMBER=4
[2025-06-05 11:19:42] Starting ATLAS job with PandaID=6677921306
[2025-06-05 11:19:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 14:25:58]  *** The last 200 lines of the pilot log: ***
[2025-06-05 14:25:58] 2025-06-05 12:24:25,237 | INFO     | total number of processed events: 400 (read)
[2025-06-05 14:25:58] 2025-06-05 12:24:25,240 | INFO     | executing command: lscpu
[2025-06-05 14:25:58] 2025-06-05 12:24:25,291 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 14:25:58] 2025-06-05 12:24:25,328 | INFO     | monitor loop #810: job 0:6677921306 is in state 'finished'
[2025-06-05 14:25:58] 2025-06-05 12:24:25,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:25:58] 2025-06-05 12:24:27,831 | INFO     | monitor loop #811: job 0:6677921306 is in state 'finished'
[2025-06-05 14:25:58] 2025-06-05 12:24:27,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,961 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 14:25:58] 2025-06-05 12:24:28,961 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677921306/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,962 | INFO     | extracted standard info from prmon json
[2025-06-05 14:25:58] 2025-06-05 12:24:28,962 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 14:25:58] 2025-06-05 12:24:28,963 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 14:25:58] 2025-06-05 12:24:28,963 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 14:25:58] 2025-06-05 12:24:28,963 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 14:25:58] 2025-06-05 12:24:28,967 | INFO     | fitting pss+swap vs Time
[2025-06-05 14:25:58] 2025-06-05 12:24:28,968 | INFO     | sum of square deviations: 1838657730.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,969 | INFO     | sum of deviations: -6655004779.000003
[2025-06-05 14:25:58] 2025-06-05 12:24:28,969 | INFO     | mean x: 1749120707.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,969 | INFO     | mean y: 2357305.867403315
[2025-06-05 14:25:58] 2025-06-05 12:24:28,970 | INFO     | -- intersect: 6333283651.867027
[2025-06-05 14:25:58] 2025-06-05 12:24:28,970 | INFO     | intersect: 6333283651.867027
[2025-06-05 14:25:58] 2025-06-05 12:24:28,970 | INFO     | chi2: 1.6103695320183287
[2025-06-05 14:25:58] 2025-06-05 12:24:28,971 | INFO     | sum of square deviations: 1690450300.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,972 | INFO     | sum of deviations: -6202836453.499998
[2025-06-05 14:25:58] 2025-06-05 12:24:28,972 | INFO     | mean x: 1749120554.5
[2025-06-05 14:25:58] 2025-06-05 12:24:28,972 | INFO     | mean y: 2357771.2556818184
[2025-06-05 14:25:58] 2025-06-05 12:24:28,972 | INFO     | -- intersect: 6420475320.774133
[2025-06-05 14:25:58] 2025-06-05 12:24:28,972 | INFO     | intersect: 6420475320.774133
[2025-06-05 14:25:58] 2025-06-05 12:24:28,973 | INFO     | chi2: 1.610130997197495
[2025-06-05 14:25:58] 2025-06-05 12:24:28,973 | INFO     | current chi2=1.610130997197495 (change=0.014812427588257758 %)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,973 | INFO     | right removable region: 175
[2025-06-05 14:25:58] 2025-06-05 12:24:28,973 | INFO     | sum of square deviations: 1690450300.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,974 | INFO     | sum of deviations: -32629133843.5
[2025-06-05 14:25:58] 2025-06-05 12:24:28,975 | INFO     | mean x: 1749120859.5
[2025-06-05 14:25:58] 2025-06-05 12:24:28,975 | INFO     | mean y: 2383690.596590909
[2025-06-05 14:25:58] 2025-06-05 12:24:28,975 | INFO     | -- intersect: 33763978830.710003
[2025-06-05 14:25:58] 2025-06-05 12:24:28,975 | INFO     | intersect: 33763978830.710003
[2025-06-05 14:25:58] 2025-06-05 12:24:28,975 | INFO     | chi2: 0.11852100298265406
[2025-06-05 14:25:58] 2025-06-05 12:24:28,976 | INFO     | current chi2=0.11852100298265406 (change=92.64013627765873 %)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,976 | INFO     | sum of square deviations: 1550429070.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,977 | INFO     | sum of deviations: -27694327570.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,977 | INFO     | mean x: 1749121012.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,977 | INFO     | mean y: 2378326.3918128656
[2025-06-05 14:25:58] 2025-06-05 12:24:28,978 | INFO     | -- intersect: 31245813581.316372
[2025-06-05 14:25:58] 2025-06-05 12:24:28,978 | INFO     | intersect: 31245813581.316372
[2025-06-05 14:25:58] 2025-06-05 12:24:28,978 | INFO     | chi2: 0.10831155291456827
[2025-06-05 14:25:58] 2025-06-05 12:24:28,978 | INFO     | current chi2=0.10831155291456827 (change=8.614042921641465 %)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,978 | INFO     | left removable region: 20
[2025-06-05 14:25:58] 2025-06-05 12:24:28,979 | INFO     | sum of square deviations: 1154663510.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,980 | INFO     | sum of deviations: -18389362986.999996
[2025-06-05 14:25:58] 2025-06-05 12:24:28,980 | INFO     | mean x: 1749121134.0
[2025-06-05 14:25:58] 2025-06-05 12:24:28,980 | INFO     | mean y: 2369232.535483871
[2025-06-05 14:25:58] 2025-06-05 12:24:28,980 | INFO     | -- intersect: 27859163149.370235
[2025-06-05 14:25:58] 2025-06-05 12:24:28,980 | INFO     | intersect: 27859163149.370235
[2025-06-05 14:25:58] 2025-06-05 12:24:28,981 | INFO     | chi2: 0.08270643876951086
[2025-06-05 14:25:58] 2025-06-05 12:24:28,981 | INFO     | -- intersect: 27859163149.370235
[2025-06-05 14:25:58] 2025-06-05 12:24:28,981 | INFO     | current memory leak: -15.93 B/s (using 155 data points, chi2=0.08)
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | ..............................
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | . Timing measurements:
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | . get job = 0 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | . initial setup = 1 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | . payload setup = 6 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,982 | INFO     | . stage-in = 0 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,983 | INFO     | . payload execution = 11041 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,983 | INFO     | . stage-out = 1 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,983 | INFO     | . log creation = 0 s
[2025-06-05 14:25:58] 2025-06-05 12:24:28,983 | INFO     | ..............................
[2025-06-05 14:25:58] 2025-06-05 12:24:29,334 | INFO     | 
[2025-06-05 14:25:58] 2025-06-05 12:24:29,334 | INFO     | job summary report
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | --------------------------------------------------
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | PanDA job id: 6677921306
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | task id: 45006595
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | errors: (none)
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | pilot state: finished 
[2025-06-05 14:25:58] 2025-06-05 12:24:29,335 | INFO     | transexitcode: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | exeerrorcode: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | exeerrordiag: 
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | exitcode: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | exitmsg: OK
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | cpuconsumptiontime: 42327 s
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | nevents: 400
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | neventsw: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:29,336 | INFO     | pid: 3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | pgrp: 3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | corecount: 4
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | event service: False
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | sizes: {0: 2397302, 1: 2397302, 4: 2397536, 11: 2397564, 11051: 2426551, 11053: 2435514, 11055: 2435698, 11062: 2435868}
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | --------------------------------------------------
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | 
[2025-06-05 14:25:58] 2025-06-05 12:24:29,337 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-05 14:25:58] 2025-06-05 12:24:29,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,358 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,358 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 14:25:58] 2025-06-05 12:24:29,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 14:25:58] 2025-06-05 12:24:29,361 | INFO     | job 6677921306 has completed (purged errors)
[2025-06-05 14:25:58] 2025-06-05 12:24:29,361 | INFO     | overall cleanup function is called
[2025-06-05 14:25:58] 2025-06-05 12:24:30,368 | INFO     | --- collectZombieJob: --- 10, [3811880]
[2025-06-05 14:25:58] 2025-06-05 12:24:30,369 | INFO     | zombie collector waiting for pid 3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:30,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 14:25:58] 2025-06-05 12:24:30,369 | INFO     | collected zombie processes
[2025-06-05 14:25:58] 2025-06-05 12:24:30,369 | INFO     | will attempt to kill all subprocesses of pid=3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:30,674 | INFO     | process IDs to be killed: [3811880] (in reverse order)
[2025-06-05 14:25:58] 2025-06-05 12:24:30,756 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 14:25:58] 2025-06-05 12:24:30,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 14:25:58] 2025-06-05 12:24:30,764 | INFO     | did not find any defunct processes belonging to 3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:30,771 | INFO     | did not find any defunct processes belonging to 3811880
[2025-06-05 14:25:58] 2025-06-05 12:24:30,771 | INFO     | ready for new job
[2025-06-05 14:25:58] 2025-06-05 12:24:30,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 14:25:58] 2025-06-05 12:24:30,773 | INFO     | **************************************
[2025-06-05 14:25:58] 2025-06-05 12:24:30,773 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 14:25:58] 2025-06-05 12:24:30,773 | INFO     | **************************************
[2025-06-05 14:25:58] 2025-06-05 12:24:30,774 | INFO     | 
[2025-06-05 14:25:58] 2025-06-05 12:24:30,776 | INFO     | architecture information:
[2025-06-05 14:25:58] 2025-06-05 12:24:30,776 | INFO     | executing command: cat /etc/os-release
[2025-06-05 14:25:58] 2025-06-05 12:24:30,789 | INFO     | cat /etc/os-release:
[2025-06-05 14:25:58] NAME="CentOS Linux"
[2025-06-05 14:25:58] VERSION="7 (Core)"
[2025-06-05 14:25:58] ID="centos"
[2025-06-05 14:25:58] ID_LIKE="rhel fedora"
[2025-06-05 14:25:58] VERSION_ID="7"
[2025-06-05 14:25:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 14:25:58] ANSI_COLOR="0;31"
[2025-06-05 14:25:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 14:25:58] HOME_URL="https://www.centos.org/"
[2025-06-05 14:25:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 14:25:58] 
[2025-06-05 14:25:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 14:25:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 14:25:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 14:25:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 14:25:58] 
[2025-06-05 14:25:58] 2025-06-05 12:24:30,790 | INFO     | **************************************
[2025-06-05 14:25:58] 2025-06-05 12:24:31,292 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-05 14:25:58] 2025-06-05 12:24:31,307 | INFO     | sufficient remaining disk space (1657261785088 B)
[2025-06-05 14:25:58] 2025-06-05 12:24:31,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 14:25:58] 2025-06-05 12:24:31,307 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 14:25:58] 2025-06-05 12:24:31,307 | INFO     | update_server=False
[2025-06-05 14:25:58] 2025-06-05 12:24:31,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 14:25:58] 2025-06-05 12:24:31,308 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 14:25:58] 2025-06-05 12:24:31,308 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 14:25:58] 2025-06-05 12:24:31,308 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 14:25:58] 2025-06-05 12:24:31,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 14:25:58] 2025-06-05 12:24:31,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 14:25:58] 2025-06-05 12:24:31,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:25:58] 2025-06-05 12:24:31,340 | INFO     | aborting loop
[2025-06-05 14:25:58] 2025-06-05 12:24:31,473 | INFO     | all payload control threads have been joined
[2025-06-05 14:25:58] 2025-06-05 12:24:31,485 | INFO     | all data control threads have been joined
[2025-06-05 14:25:58] 2025-06-05 12:24:32,087 | INFO     | all job control threads have been joined
[2025-06-05 14:25:58] 2025-06-05 12:24:32,313 | INFO     | [job] retrieve thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,344 | INFO     | [job] job monitor thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,456 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,478 | INFO     | [payload] control thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,490 | INFO     | [data] control thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,573 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:32,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 14:25:58] 2025-06-05 12:24:33,092 | INFO     | [job] control thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,106 | INFO     | [job] validate thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,230 | INFO     | [data] copytool_in thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,312 | INFO     | [data] copytool_out thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,317 | INFO     | [payload] failed_post thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,476 | INFO     | [payload] validate_post thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:33,586 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:34,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 14:25:58] 2025-06-05 12:24:35,109 | INFO     | [job] queue monitor thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:36,836 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 14:25:58] 2025-06-05 12:24:38,718 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22821103847232)>', '<ExcThread(monitor, started 22820864096000)>']
[2025-06-05 14:25:58] 2025-06-05 12:24:39,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 14:25:58] 2025-06-05 12:24:39,349 | INFO     | [monitor] control thread has ended
[2025-06-05 14:25:58] 2025-06-05 12:24:43,738 | INFO     | all workflow threads have been joined
[2025-06-05 14:25:58] 2025-06-05 12:24:43,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 14:25:58] 2025-06-05 12:24:43,739 | INFO     | traces error code: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:43,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 14:25:58] 2025-06-05 12:24:43,884 [wrapper] ==== pilot stdout END ====
[2025-06-05 14:25:58] 2025-06-05 12:24:43,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 14:25:58] 2025-06-05 12:24:43,890 [wrapper] pilotpid: 3803815
[2025-06-05 14:25:58] 2025-06-05 12:24:43,892 [wrapper] Pilot exit status: 0
[2025-06-05 14:25:58] 2025-06-05 12:24:43,902 [wrapper] pandaids: 6677921306
[2025-06-05 14:25:58] 2025-06-05 12:24:43,958 [wrapper] cleanup supervisor_pilot 4046427 3803816
[2025-06-05 14:25:58] 2025-06-05 12:24:43,961 [wrapper] Test setup, not cleaning
[2025-06-05 14:25:58] 2025-06-05 12:24:43,964 [wrapper] apfmon messages muted
[2025-06-05 14:25:58] 2025-06-05 12:24:43,966 [wrapper] ==== wrapper stdout END ====
[2025-06-05 14:25:58] 2025-06-05 12:24:43,968 [wrapper] ==== wrapper stderr END ====
[2025-06-05 14:25:58]  *** Error codes and diagnostics ***
[2025-06-05 14:25:58]     "exeErrorCode": 0,
[2025-06-05 14:25:58]     "exeErrorDiag": "",
[2025-06-05 14:25:58]     "pilotErrorCode": 0,
[2025-06-05 14:25:58]     "pilotErrorDiag": "",
[2025-06-05 14:25:58]  *** Listing of results directory ***
[2025-06-05 14:25:58] total 390984
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc      5111 Jun  3 20:32 queuedata.json
[2025-06-05 14:25:58] -rwx------ 1 boinc boinc     37140 Jun  3 20:33 runpilot2-wrapper.sh
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc       100 Jun  5 11:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 14:25:58] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 11:19 run_atlas
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc       105 Jun  5 11:19 job.xml
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc      6421 Jun  5 11:19 init_data.xml
[2025-06-05 14:25:58] -rw-r--r-- 2 boinc boinc 214796312 Jun  5 11:19 EVNT.45006593._001705.pool.root.1
[2025-06-05 14:25:58] -rw-r--r-- 2 boinc boinc     15093 Jun  5 11:19 start_atlas.sh
[2025-06-05 14:25:58] drwxrwx--x 2 boinc boinc      4096 Jun  5 11:19 shared
[2025-06-05 14:25:58] -rw-r--r-- 2 boinc boinc    508875 Jun  5 11:19 input.tar.gz
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc         0 Jun  5 11:19 boinc_lockfile
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc      2524 Jun  5 11:19 pandaJob.out
[2025-06-05 14:25:58] -rw------- 1 boinc boinc    983289 Jun  5 11:19 agis_schedconf.cvmfs.json
[2025-06-05 14:25:58] drwx------ 4 boinc boinc      4096 Jun  5 11:19 pilot3
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc       528 Jun  5 14:23 boinc_task_state.xml
[2025-06-05 14:25:58] -rw------- 1 boinc boinc 179008269 Jun  5 14:23 HITS.45006595._042517.pool.root.1
[2025-06-05 14:25:58] -rw------- 1 boinc boinc        95 Jun  5 14:23 pilot_heartbeat.json
[2025-06-05 14:25:58] -rw------- 1 boinc boinc      1038 Jun  5 14:24 memory_monitor_summary.json
[2025-06-05 14:25:58] -rw------- 1 boinc boinc   1598969 Jun  5 14:24 agis_ddmendpoints.agis.ALL.json
[2025-06-05 14:25:58] -rw------- 1 boinc boinc    316968 Jun  5 14:24 log.45006595._042517.job.log.tgz.1
[2025-06-05 14:25:58] -rw------- 1 boinc boinc      7736 Jun  5 14:24 heartbeat.json
[2025-06-05 14:25:58] -rw------- 1 boinc boinc      4487 Jun  5 14:24 pilotlog.txt
[2025-06-05 14:25:58] -rw------- 1 boinc boinc   1045675 Jun  5 14:24 log.45006595._042517.job.log.1
[2025-06-05 14:25:58] -rw------- 1 boinc boinc       357 Jun  5 14:24 output.list
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc       620 Jun  5 14:24 runtime_log
[2025-06-05 14:25:58] -rw------- 1 boinc boinc   1382400 Jun  5 14:24 result.tar.gz
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc      9026 Jun  5 14:24 runtime_log.err
[2025-06-05 14:25:58] -rw------- 1 boinc boinc       665 Jun  5 14:24 cjZKDmGdlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdilKDmMsrjlm.diag
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc      8192 Jun  5 14:25 boinc_mmap_file
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc        26 Jun  5 14:25 wrapper_checkpoint.txt
[2025-06-05 14:25:58] -rw-r--r-- 1 boinc boinc     20938 Jun  5 14:25 stderr.txt
[2025-06-05 14:25:59] HITS file was successfully produced:
[2025-06-05 14:25:59] -rw------- 1 boinc boinc 179008269 Jun  5 14:23 shared/HITS.pool.root.1
[2025-06-05 14:25:59]  *** Contents of shared directory: ***
[2025-06-05 14:25:59] total 386456
[2025-06-05 14:25:59] -rw-r--r-- 2 boinc boinc 214796312 Jun  5 11:19 ATLAS.root_0
[2025-06-05 14:25:59] -rw-r--r-- 2 boinc boinc     15093 Jun  5 11:19 start_atlas.sh
[2025-06-05 14:25:59] -rw-r--r-- 2 boinc boinc    508875 Jun  5 11:19 input.tar.gz
[2025-06-05 14:25:59] -rw------- 1 boinc boinc 179008269 Jun  5 14:23 HITS.pool.root.1
[2025-06-05 14:25:59] -rw------- 1 boinc boinc   1382400 Jun  5 14:24 result.tar.gz
14:26:00 (3800214): run_atlas exited; CPU time 42721.995270
14:26:00 (3800214): called boinc_finish(0)

</stderr_txt>
]]>

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