Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:36:54 (28635): wrapper (7.7.26015): starting
07:36:54 (28635): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:36:54] Arguments: --nthreads 8
[2025-06-04 07:36:54] Threads: 8
[2025-06-04 07:36:54] Checking for CVMFS
[2025-06-04 07:36:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:36:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:36:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:36:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:36:56] 2.11.2.0 20340 32963 95696 146769 2 93 18077810 25165824 4369 130560 0 17045028 99.783 18232539 2483 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 07:36:56] CVMFS is ok
[2025-06-04 07:36:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:36:56] Checking for apptainer binary...
[2025-06-04 07:36:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:36:56] Running /usr/bin/apptainer --version
[2025-06-04 07:36:56] apptainer version 1.3.2-1.el7
[2025-06-04 07:36:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:37:08] cg-vwn373.simple-grid.lan
[2025-06-04 07:37:08] apptainer works
[2025-06-04 07:37:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:37:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:37:08] Starting ATLAS job with PandaID=6678070860
[2025-06-04 07:37:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:42:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:42:49] 2025-06-04 09:34:23,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:42:49] 2025-06-04 09:34:25,522 | INFO     | PID=7702 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 11:42:49] 2025-06-04 09:34:25,522 | INFO     | .. there are 9 such processes running
[2025-06-04 11:42:49] 2025-06-04 09:34:26,320 | INFO     | monitor loop #1034: job 0:6678070860 is in state 'finished'
[2025-06-04 11:42:49] 2025-06-04 09:34:26,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:42:49] 2025-06-04 09:34:28,833 | INFO     | monitor loop #1035: job 0:6678070860 is in state 'finished'
[2025-06-04 11:42:49] 2025-06-04 09:34:28,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,784 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 11:42:49] 2025-06-04 09:34:29,784 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6678070860/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,785 | INFO     | extracted standard info from prmon json
[2025-06-04 11:42:49] 2025-06-04 09:34:29,785 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:42:49] 2025-06-04 09:34:29,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:42:49] 2025-06-04 09:34:29,786 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:42:49] 2025-06-04 09:34:29,786 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:42:49] 2025-06-04 09:34:29,802 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:42:49] 2025-06-04 09:34:29,803 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | sum of deviations: 45749802420.99999
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | mean x: 1749022809.5
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | mean y: 2445562.072072072
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | -- intersect: -23583655818.299683
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | intersect: -23583655818.299683
[2025-06-04 11:42:49] 2025-06-04 09:34:29,805 | INFO     | chi2: 4.528070036694196
[2025-06-04 11:42:49] 2025-06-04 09:34:29,806 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | sum of deviations: 59001165053.99999
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | mean x: 1749022657.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | mean y: 2454397.276497696
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | -- intersect: -32566785287.316868
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | intersect: -32566785287.316868
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | chi2: 3.791486249244571
[2025-06-04 11:42:49] 2025-06-04 09:34:29,808 | INFO     | current chi2=3.791486249244571 (change=16.267058183300133 %)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,809 | INFO     | right removable region: 216
[2025-06-04 11:42:49] 2025-06-04 09:34:29,809 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | sum of deviations: -20307870388.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | mean x: 1749022962.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | mean y: 2490391.5622119815
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | -- intersect: 11212642138.29704
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | intersect: 11212642138.29704
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | chi2: 0.9828810946735381
[2025-06-04 11:42:49] 2025-06-04 09:34:29,811 | INFO     | current chi2=0.9828810946735381 (change=78.29359778650621 %)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,812 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,814 | INFO     | sum of deviations: -28069483364.999996
[2025-06-04 11:42:49] 2025-06-04 09:34:29,814 | INFO     | mean x: 1749023114.5
[2025-06-04 11:42:49] 2025-06-04 09:34:29,814 | INFO     | mean y: 2495872.4811320757
[2025-06-04 11:42:49] 2025-06-04 09:34:29,814 | INFO     | -- intersect: 16619534317.043041
[2025-06-04 11:42:49] 2025-06-04 09:34:29,814 | INFO     | intersect: 16619534317.043041
[2025-06-04 11:42:49] 2025-06-04 09:34:29,815 | INFO     | chi2: 0.9016548353908632
[2025-06-04 11:42:49] 2025-06-04 09:34:29,815 | INFO     | current chi2=0.9016548353908632 (change=8.264098243710144 %)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,815 | INFO     | left removable region: 20
[2025-06-04 11:42:49] 2025-06-04 09:34:29,815 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,816 | INFO     | sum of deviations: -1466280485.0000002
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | mean x: 1749023236.5
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | mean y: 2496283.173469388
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | -- intersect: 1100938714.9951744
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | intersect: 1100938714.9951744
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | chi2: 0.04783018292485312
[2025-06-04 11:42:49] 2025-06-04 09:34:29,817 | INFO     | -- intersect: 1100938714.9951744
[2025-06-04 11:42:49] 2025-06-04 09:34:29,818 | INFO     | current memory leak: -0.63 B/s (using 196 data points, chi2=0.05)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,818 | INFO     | ..............................
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . Timing measurements:
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . get job = 0 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . initial setup = 9 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . payload setup = 153 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . stage-in = 0 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . payload execution = 13644 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . stage-out = 3 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | . log creation = 1 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,819 | INFO     | ..............................
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | 
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | job summary report
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | --------------------------------------------------
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | PanDA job id: 6678070860
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | task id: 45006595
[2025-06-04 11:42:49] 2025-06-04 09:34:29,941 | INFO     | errors: (none)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | pilot state: finished 
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | transexitcode: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | exeerrorcode: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | exeerrordiag: 
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | exitcode: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | exitmsg: OK
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | cpuconsumptiontime: 48808 s
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | nevents: 400
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | neventsw: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:29,942 | INFO     | pid: 14384
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | pgrp: 14384
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | corecount: 8
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | event service: False
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | sizes: {0: 2404349, 1: 2405035, 2: 2405234, 13: 2405234, 24: 2405290, 35: 2405318, 45: 2405474, 56: 2405502, 67: 2405530, 78: 2405558, 84: 2405820, 88: 2406128, 13
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | --------------------------------------------------
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | 
[2025-06-04 11:42:49] 2025-06-04 09:34:29,943 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 11:42:49] 2025-06-04 09:34:29,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | job 6678070860 has completed (purged errors)
[2025-06-04 11:42:49] 2025-06-04 09:34:29,995 | INFO     | overall cleanup function is called
[2025-06-04 11:42:49] 2025-06-04 09:34:31,004 | INFO     | --- collectZombieJob: --- 10, [14384]
[2025-06-04 11:42:49] 2025-06-04 09:34:31,005 | INFO     | zombie collector waiting for pid 14384
[2025-06-04 11:42:49] 2025-06-04 09:34:31,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:42:49] 2025-06-04 09:34:31,005 | INFO     | collected zombie processes
[2025-06-04 11:42:49] 2025-06-04 09:34:31,005 | INFO     | will attempt to kill all subprocesses of pid=14384
[2025-06-04 11:42:49] 2025-06-04 09:34:31,114 | INFO     | process IDs to be killed: [14384] (in reverse order)
[2025-06-04 11:42:49] 2025-06-04 09:34:31,992 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:42:49] 2025-06-04 09:34:31,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:42:49] 2025-06-04 09:34:31,996 | INFO     | did not find any defunct processes belonging to 14384
[2025-06-04 11:42:49] 2025-06-04 09:34:31,999 | INFO     | did not find any defunct processes belonging to 14384
[2025-06-04 11:42:49] 2025-06-04 09:34:31,999 | INFO     | ready for new job
[2025-06-04 11:42:49] 2025-06-04 09:34:32,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:42:49] 2025-06-04 09:34:32,002 | INFO     | **************************************
[2025-06-04 11:42:49] 2025-06-04 09:34:32,002 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:42:49] 2025-06-04 09:34:32,002 | INFO     | **************************************
[2025-06-04 11:42:49] 2025-06-04 09:34:32,002 | INFO     | 
[2025-06-04 11:42:49] 2025-06-04 09:34:32,003 | INFO     | pilot is running in a VM
[2025-06-04 11:42:49] 2025-06-04 09:34:32,003 | INFO     | architecture information:
[2025-06-04 11:42:49] 2025-06-04 09:34:32,013 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:42:49] 2025-06-04 09:34:32,207 | INFO     | cat /etc/os-release:
[2025-06-04 11:42:49] NAME="CentOS Linux"
[2025-06-04 11:42:49] VERSION="7 (Core)"
[2025-06-04 11:42:49] ID="centos"
[2025-06-04 11:42:49] ID_LIKE="rhel fedora"
[2025-06-04 11:42:49] VERSION_ID="7"
[2025-06-04 11:42:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:42:49] ANSI_COLOR="0;31"
[2025-06-04 11:42:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:42:49] HOME_URL="https://www.centos.org/"
[2025-06-04 11:42:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:42:49] 
[2025-06-04 11:42:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:42:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:42:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:42:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:42:49] 
[2025-06-04 11:42:49] 2025-06-04 09:34:32,208 | INFO     | **************************************
[2025-06-04 11:42:49] 2025-06-04 09:34:32,712 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 11:42:49] 2025-06-04 09:34:32,851 | INFO     | sufficient remaining disk space (496542679040 B)
[2025-06-04 11:42:49] 2025-06-04 09:34:32,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:42:49] 2025-06-04 09:34:32,852 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:42:49] 2025-06-04 09:34:32,852 | INFO     | update_server=False
[2025-06-04 11:42:49] 2025-06-04 09:34:32,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:42:49] 2025-06-04 09:34:32,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:42:49] 2025-06-04 09:34:32,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:42:49] 2025-06-04 09:34:32,854 | INFO     | aborting loop
[2025-06-04 11:42:49] 2025-06-04 09:34:33,250 | INFO     | all data control threads have been joined
[2025-06-04 11:42:49] 2025-06-04 09:34:33,567 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:42:49] 2025-06-04 09:34:33,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:42:49] 2025-06-04 09:34:33,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:42:49] 2025-06-04 09:34:33,608 | INFO     | all payload control threads have been joined
[2025-06-04 11:42:49] 2025-06-04 09:34:33,639 | INFO     | all job control threads have been joined
[2025-06-04 11:42:49] 2025-06-04 09:34:33,859 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:33,860 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:33,905 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:33,920 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:33,953 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,084 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,256 | INFO     | [data] control thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,613 | INFO     | [payload] control thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,645 | INFO     | [job] control thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,859 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,894 | INFO     | [job] validate thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,895 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,956 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:34,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:42:49] 2025-06-04 09:34:35,964 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:36,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:42:49] 2025-06-04 09:34:40,324 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:42:49] 2025-06-04 09:34:40,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226340976448)>', '<ExcThread(monitor, started 140225372219136)>']
[2025-06-04 11:42:49] 2025-06-04 09:34:41,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:42:49] 2025-06-04 09:34:41,614 | INFO     | [monitor] control thread has ended
[2025-06-04 11:42:49] 2025-06-04 09:34:45,854 | INFO     | all workflow threads have been joined
[2025-06-04 11:42:49] 2025-06-04 09:34:45,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:42:49] 2025-06-04 09:34:45,855 | INFO     | traces error code: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:45,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:42:49] 2025-06-04 09:34:46,222 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:42:49] 2025-06-04 09:34:46,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:42:49] 2025-06-04 09:34:46,415 [wrapper] pilotpid: 7702
[2025-06-04 11:42:49] 2025-06-04 09:34:46,520 [wrapper] Pilot exit status: 0
[2025-06-04 11:42:49] 2025-06-04 09:34:46,985 [wrapper] pandaids: 6678070860
[2025-06-04 11:42:49] 2025-06-04 09:34:47,556 [wrapper] cleanup supervisor_pilot 11655 7703
[2025-06-04 11:42:49] 2025-06-04 09:34:47,562 [wrapper] Test setup, not cleaning
[2025-06-04 11:42:49] 2025-06-04 09:34:47,565 [wrapper] apfmon messages muted
[2025-06-04 11:42:49] 2025-06-04 09:34:47,568 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:42:49] 2025-06-04 09:34:47,571 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:42:49]  *** Error codes and diagnostics ***
[2025-06-04 11:42:49]     "exeErrorCode": 0,
[2025-06-04 11:42:49]     "exeErrorDiag": "",
[2025-06-04 11:42:49]     "pilotErrorCode": 0,
[2025-06-04 11:42:49]     "pilotErrorDiag": "",
[2025-06-04 11:42:49]  *** Listing of results directory ***
[2025-06-04 11:42:49] total 390580
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:09 pilot3.tar.gz
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:10 queuedata.json
[2025-06-04 11:42:49] -rwx------. 1 boinc boinc     37140 Jun  3 22:11 runpilot2-wrapper.sh
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:42:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:36 run_atlas
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:36 job.xml
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc 212968513 Jun  4 07:36 EVNT.45006593._001794.pool.root.1
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc    508877 Jun  4 07:36 input.tar.gz
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc      6393 Jun  4 07:36 init_data.xml
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:36 start_atlas.sh
[2025-06-04 11:42:49] drwxrwx--x. 2 boinc boinc        68 Jun  4 07:36 shared
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:36 boinc_lockfile
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc      2521 Jun  4 07:37 pandaJob.out
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc    986745 Jun  4 07:39 agis_schedconf.cvmfs.json
[2025-06-04 11:42:49] drwx------. 4 boinc boinc      4096 Jun  4 07:40 pilot3
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc 180020341 Jun  4 11:31 HITS.45006595._044735.pool.root.1
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc       531 Jun  4 11:31 boinc_task_state.xml
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc      1017 Jun  4 11:32 memory_monitor_summary.json
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc   1603667 Jun  4 11:33 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc    368320 Jun  4 11:33 log.45006595._044735.job.log.tgz.1
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc        95 Jun  4 11:34 pilot_heartbeat.json
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc      7687 Jun  4 11:34 heartbeat.json
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc      4417 Jun  4 11:34 pilotlog.txt
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc   1202221 Jun  4 11:34 log.45006595._044735.job.log.1
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc       357 Jun  4 11:34 output.list
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:34 runtime_log
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc   1587200 Jun  4 11:34 result.tar.gz
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc      8673 Jun  4 11:34 runtime_log.err
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc       656 Jun  4 11:34 5bdKDmz9mg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIrZKDmrukUfn.diag
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:42 boinc_mmap_file
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:42 wrapper_checkpoint.txt
[2025-06-04 11:42:49] -rw-r--r--. 1 boinc boinc     20865 Jun  4 11:42 stderr.txt
[2025-06-04 11:42:49] HITS file was successfully produced:
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc 180020341 Jun  4 11:31 shared/HITS.pool.root.1
[2025-06-04 11:42:49]  *** Contents of shared directory: ***
[2025-06-04 11:42:49] total 385852
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc 212968513 Jun  4 07:36 ATLAS.root_0
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc    508877 Jun  4 07:36 input.tar.gz
[2025-06-04 11:42:49] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:36 start_atlas.sh
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc 180020341 Jun  4 11:31 HITS.pool.root.1
[2025-06-04 11:42:49] -rw-------. 1 boinc boinc   1587200 Jun  4 11:34 result.tar.gz
11:42:51 (28635): run_atlas exited; CPU time 48997.524480
11:42:51 (28635): called boinc_finish(0)

</stderr_txt>
]]>

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