Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:05:12 (2756652): wrapper (7.7.26015): starting
15:05:12 (2756652): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 15:05:12] Arguments: --nthreads 12
[2025-06-03 15:05:12] Threads: 12
[2025-06-03 15:05:12] Checking for CVMFS
[2025-06-03 15:05:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:05:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:05:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:05:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:05:12] 2.11.5.0 1286055 22729 237160 146757 0 621 41873708 45568000 14098 130560 0 239706882 99.824 122443789 25953 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 15:05:12] CVMFS is ok
[2025-06-03 15:05:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:05:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:05:12] Further information can be found at the LHC@home message board.
[2025-06-03 15:05:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:05:12] Checking for apptainer binary...
[2025-06-03 15:05:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:05:12] Running /usr/bin/apptainer --version
[2025-06-03 15:05:12] apptainer version 1.4.0-1.el9
[2025-06-03 15:05:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:05:13] wns0099.triumf.lcg
[2025-06-03 15:05:13] apptainer works
[2025-06-03 15:05:13] Set ATHENA_PROC_NUMBER=12
[2025-06-03 15:05:13] Set ATHENA_CORE_NUMBER=12
[2025-06-03 15:05:13] Starting ATLAS job with PandaID=6678015422
[2025-06-03 15:05:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:08:26]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | found no stored workdir sizes
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | WARNING  | wrong length of table data, x=[1748988351.0], y=[634.0] (must be same and length>=4)
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . Timing measurements:
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . get job = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . initial setup = 3 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . payload setup = 6 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . stage-in = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . payload execution = 16 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . stage-out = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . log creation = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678015422/pilotlog.txt
[2025-06-03 15:08:26] 2025-06-03 22:08:10,947 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 15:08:26] - Log from pilotlog.txt -
[2025-06-03 15:08:26] 2025-06-03 22:08:10,935 | INFO     | extracted standard info from prmon json
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | found no stored workdir sizes
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | WARNING  | wrong length of table data, x=[1748988351.0], y=[634.0] (must be same and length>=4)
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . Timing measurements:
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . get job = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . initial setup = 3 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . payload setup = 6 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . stage-in = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . payload execution = 16 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . stage-out = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . log creation = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678015422/pilotlog.txt
[2025-06-03 15:08:26] 2025-06-03 22:08:10,948 | WARNING  | 
[2025-06-03 15:08:26] [begin log extracts]
[2025-06-03 15:08:26] - Log from pilotlog.txt -
[2025-06-03 15:08:26] 2025-06-03 22:08:10,935 | INFO     | extracted standard info from prmon json
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | WARNING  | found no stored workdir sizes
[2025-06-03 15:08:26] 2025-06-03 22:08:10,936 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | WARNING  | wrong length of table data, x=[1748988351.0], y=[634.0] (must be same and length>=4)
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . Timing measurements:
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . get job = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . initial setup = 3 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . payload setup = 6 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,937 | INFO     | . stage-in = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . payload execution = 16 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . stage-out = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | . log creation = 0 s
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | ..............................
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 15:08:26] 2025-06-03 22:08:10,938 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678015422/pilotlog.txt
[2025-06-03 15:08:26] [end log extracts]
[2025-06-03 15:08:26] 2025-06-03 22:08:10,948 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 15:08:26] 2025-06-03 22:08:10,948 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 15:08:26] 2025-06-03 22:08:11,492 | INFO     | 
[2025-06-03 15:08:26] 2025-06-03 22:08:11,492 | INFO     | job summary report
[2025-06-03 15:08:26] 2025-06-03 22:08:11,492 | INFO     | --------------------------------------------------
[2025-06-03 15:08:26] 2025-06-03 22:08:11,492 | INFO     | PanDA job id: 6678015422
[2025-06-03 15:08:26] 2025-06-03 22:08:11,492 | INFO     | task id: 45006595
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 15:05:59,317 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | pilot state: failed 
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | transexitcode: 65
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | exeerrorcode: 65
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | exitcode: 65
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | cpuconsumptiontime: 20 s
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | nevents: 0
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | neventsw: 0
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | pid: 2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | pgrp: 2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:11,493 | INFO     | corecount: 12
[2025-06-03 15:08:26] 2025-06-03 22:08:11,494 | INFO     | event service: False
[2025-06-03 15:08:26] 2025-06-03 22:08:11,494 | INFO     | sizes: {0: 2405181, 4: 2405387, 11: 2405415, 27: 2428592, 28: 2432827, 32: 2432855, 151: 2433125}
[2025-06-03 15:08:26] 2025-06-03 22:08:11,494 | INFO     | --------------------------------------------------
[2025-06-03 15:08:26] 2025-06-03 22:08:11,494 | INFO     | 
[2025-06-03 15:08:26] 2025-06-03 22:08:11,494 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,510 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:08:26] 2025-06-03 22:08:11,511 | INFO     | job 6678015422 has completed (purged errors)
[2025-06-03 15:08:26] 2025-06-03 22:08:11,512 | INFO     | overall cleanup function is called
[2025-06-03 15:08:26] 2025-06-03 22:08:12,517 | INFO     | --- collectZombieJob: --- 10, [2767722]
[2025-06-03 15:08:26] 2025-06-03 22:08:12,517 | INFO     | zombie collector waiting for pid 2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:12,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:08:26] 2025-06-03 22:08:12,518 | INFO     | collected zombie processes
[2025-06-03 15:08:26] 2025-06-03 22:08:12,518 | INFO     | will attempt to kill all subprocesses of pid=2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:12,716 | INFO     | process IDs to be killed: [2767722] (in reverse order)
[2025-06-03 15:08:26] 2025-06-03 22:08:12,795 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:08:26] 2025-06-03 22:08:12,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:08:26] 2025-06-03 22:08:12,804 | INFO     | did not find any defunct processes belonging to 2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:12,812 | INFO     | did not find any defunct processes belonging to 2767722
[2025-06-03 15:08:26] 2025-06-03 22:08:12,812 | INFO     | ready for new job
[2025-06-03 15:08:26] 2025-06-03 22:08:12,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:08:26] 2025-06-03 22:08:12,813 | INFO     | **************************************
[2025-06-03 15:08:26] 2025-06-03 22:08:12,814 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:08:26] 2025-06-03 22:08:12,814 | INFO     | **************************************
[2025-06-03 15:08:26] 2025-06-03 22:08:12,814 | INFO     | 
[2025-06-03 15:08:26] 2025-06-03 22:08:12,816 | INFO     | architecture information:
[2025-06-03 15:08:26] 2025-06-03 22:08:12,816 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:08:26] 2025-06-03 22:08:12,827 | INFO     | cat /etc/os-release:
[2025-06-03 15:08:26] NAME="CentOS Linux"
[2025-06-03 15:08:26] VERSION="7 (Core)"
[2025-06-03 15:08:26] ID="centos"
[2025-06-03 15:08:26] ID_LIKE="rhel fedora"
[2025-06-03 15:08:26] VERSION_ID="7"
[2025-06-03 15:08:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:08:26] ANSI_COLOR="0;31"
[2025-06-03 15:08:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:08:26] HOME_URL="https://www.centos.org/"
[2025-06-03 15:08:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:08:26] 
[2025-06-03 15:08:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:08:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:08:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:08:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:08:26] 
[2025-06-03 15:08:26] 2025-06-03 22:08:12,827 | INFO     | **************************************
[2025-06-03 15:08:26] 2025-06-03 22:08:13,331 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 15:08:26] 2025-06-03 22:08:13,350 | INFO     | sufficient remaining disk space (2059762925568 B)
[2025-06-03 15:08:26] 2025-06-03 22:08:13,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:08:26] 2025-06-03 22:08:13,350 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:08:26] 2025-06-03 22:08:13,350 | INFO     | update_server=False
[2025-06-03 15:08:26] 2025-06-03 22:08:13,350 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:08:26] 2025-06-03 22:08:13,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:08:26] 2025-06-03 22:08:13,351 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 15:08:26] 2025-06-03 22:08:13,352 | INFO     | aborting loop
[2025-06-03 15:08:26] 2025-06-03 22:08:13,352 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:08:26] 2025-06-03 22:08:13,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:08:26] 2025-06-03 22:08:13,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:08:26] 2025-06-03 22:08:14,043 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:08:26] 2025-06-03 22:08:14,327 | INFO     | all data control threads have been joined
[2025-06-03 15:08:26] 2025-06-03 22:08:14,355 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:14,359 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:14,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:14,450 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:14,501 | INFO     | all payload control threads have been joined
[2025-06-03 15:08:26] 2025-06-03 22:08:14,725 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:08:26] 2025-06-03 22:08:14,935 | INFO     | all job control threads have been joined
[2025-06-03 15:08:26] 2025-06-03 22:08:14,970 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,332 | INFO     | [data] control thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,506 | INFO     | [payload] control thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,521 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,523 | INFO     | [job] validate thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,683 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,799 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,832 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:15,940 | INFO     | [job] control thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:16,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:08:26] 2025-06-03 22:08:16,049 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:17,022 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:18,731 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:08:26] 2025-06-03 22:08:20,743 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140460089915200)>', '<ExcThread(monitor, started 140459540190976)>']
[2025-06-03 15:08:26] 2025-06-03 22:08:21,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:08:26] 2025-06-03 22:08:21,392 | INFO     | [monitor] control thread has ended
[2025-06-03 15:08:26] 2025-06-03 22:08:25,768 | INFO     | all workflow threads have been joined
[2025-06-03 15:08:26] 2025-06-03 22:08:25,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:08:26] 2025-06-03 22:08:25,769 | INFO     | traces error code: 0
[2025-06-03 15:08:26] 2025-06-03 22:08:25,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:08:26] 2025-06-03 22:08:25,908 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:08:26] 2025-06-03 22:08:25,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:08:26] 2025-06-03 22:08:25,918 [wrapper] pilotpid: 2761401
[2025-06-03 15:08:26] 2025-06-03 22:08:25,922 [wrapper] Pilot exit status: 0
[2025-06-03 15:08:26] 2025-06-03 22:08:25,935 [wrapper] pandaids: 6678015422
[2025-06-03 15:08:26] 2025-06-03 22:08:25,988 [wrapper] cleanup supervisor_pilot 2761407 2761402
[2025-06-03 15:08:26] 2025-06-03 22:08:25,993 [wrapper] Test setup, not cleaning
[2025-06-03 15:08:26] 2025-06-03 22:08:25,995 [wrapper] apfmon messages muted
[2025-06-03 15:08:26] 2025-06-03 22:08:25,997 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:08:26] 2025-06-03 22:08:26,002 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:08:26]  *** Error codes and diagnostics ***
[2025-06-03 15:08:26]     "exeErrorCode": 65,
[2025-06-03 15:08:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 15:08:26]     "pilotErrorCode": 1305,
[2025-06-03 15:08:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 15:08:26]  *** Listing of results directory ***
[2025-06-03 15:08:26] total 211684
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc    495897 Jun  3 12:41 pilot3.tar.gz
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:06 queuedata.json
[2025-06-03 15:08:26] -rwx------. 1 boinc boinc     37140 Jun  3 13:07 runpilot2-wrapper.sh
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc       100 Jun  3 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:08:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 15:05 run_atlas
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc       105 Jun  3 15:05 job.xml
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc      6602 Jun  3 15:05 init_data.xml
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc 212741412 Jun  3 15:05 EVNT.45006593._001786.pool.root.1
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:05 start_atlas.sh
[2025-06-03 15:08:26] drwxrwx--x. 2 boinc boinc      4096 Jun  3 15:05 shared
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc    508883 Jun  3 15:05 input.tar.gz
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc         0 Jun  3 15:05 boinc_lockfile
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc      2525 Jun  3 15:05 pandaJob.out
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc    986869 Jun  3 15:05 agis_schedconf.cvmfs.json
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc   1603667 Jun  3 15:05 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:08:26] drwx------. 4 boinc boinc      4096 Jun  3 15:05 pilot3
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc       522 Jun  3 15:05 boinc_task_state.xml
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc       951 Jun  3 15:06 memory_monitor_summary.json
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc     20587 Jun  3 15:06 log.45006595._044539.job.log.tgz.1
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc        95 Jun  3 15:07 pilot_heartbeat.json
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc      8315 Jun  3 15:08 heartbeat.json
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc        22 Jun  3 15:08 wrapper_checkpoint.txt
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc      8192 Jun  3 15:08 boinc_mmap_file
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc      4475 Jun  3 15:08 pilotlog.txt
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc     73152 Jun  3 15:08 log.45006595._044539.job.log.1
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc       188 Jun  3 15:08 output.list
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc       620 Jun  3 15:08 runtime_log
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc    112640 Jun  3 15:08 result.tar.gz
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc      8484 Jun  3 15:08 runtime_log.err
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc       644 Jun  3 15:08 eejNDmO6mg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE1lKDmIZyBFo.diag
[2025-06-03 15:08:26] -rw-r--r--. 1 boinc boinc     21482 Jun  3 15:08 stderr.txt
[2025-06-03 15:08:26] No HITS result produced
[2025-06-03 15:08:26]  *** Contents of shared directory: ***
[2025-06-03 15:08:26] total 208388
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc 212741412 Jun  3 15:05 ATLAS.root_0
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:05 start_atlas.sh
[2025-06-03 15:08:26] -rw-r--r--. 2 boinc boinc    508883 Jun  3 15:05 input.tar.gz
[2025-06-03 15:08:26] -rw-------. 1 boinc boinc    112640 Jun  3 15:08 result.tar.gz
15:08:28 (2756652): run_atlas exited; CPU time 22.973075
15:08:28 (2756652): called boinc_finish(0)

</stderr_txt>
]]>

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