Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:00:42 (1145021): wrapper (7.7.26015): starting
10:00:42 (1145021): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 10:00:42] Arguments: --nthreads 12
[2025-06-05 10:00:42] Threads: 12
[2025-06-05 10:00:42] Checking for CVMFS
[2025-06-05 10:00:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 10:00:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 10:00:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 10:00:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 10:00:42] 2.12.7.0 16265 3030 64204 146814 1 186 2463249 4096001 844 130560 0 3045760 99.992 783815 170 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 10:00:42] CVMFS is ok
[2025-06-05 10:00:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:00:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 10:00:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 10:00:42] Further information can be found at the LHC@home message board.
[2025-06-05 10:00:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:00:42] Checking for apptainer binary...
[2025-06-05 10:00:42] apptainer is not installed, using version from CVMFS
[2025-06-05 10:00:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:00:42] gg3250
[2025-06-05 10:00:42] apptainer works
[2025-06-05 10:00:42] Set ATHENA_PROC_NUMBER=12
[2025-06-05 10:00:42] Set ATHENA_CORE_NUMBER=12
[2025-06-05 10:00:42] Starting ATLAS job with PandaID=6677861953
[2025-06-05 10:00:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:48:10]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6677861953/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | INFO     | extracted standard info from prmon json
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:48:10] 2025-06-05 12:47:57,075 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:48:10] 2025-06-05 12:47:57,077 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:48:10] 2025-06-05 12:47:57,077 | INFO     | sum of square deviations: 1392881930.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,077 | INFO     | sum of deviations: 14036570981.000002
[2025-06-05 12:48:10] 2025-06-05 12:47:57,077 | INFO     | mean x: 1749122667.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | mean y: 2640292.212121212
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | -- intersect: -17623896416.33828
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | intersect: -17623896416.33828
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | chi2: 2.577709481221162
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | sum of square deviations: 1270051720.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | sum of deviations: 25971483433.5
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | mean x: 1749122514.5
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | mean y: 2654704.33125
[2025-06-05 12:48:10] 2025-06-05 12:47:57,078 | INFO     | -- intersect: -35765421267.01472
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | intersect: -35765421267.01472
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | chi2: 1.5909151709592848
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | current chi2=1.5909151709592848 (change=38.28182801245678 %)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | sum of square deviations: 1154663510.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | sum of deviations: 24724791328.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | mean x: 1749122362.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | mean y: 2653056.793548387
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | -- intersect: -37451276190.16817
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | intersect: -37451276190.16817
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | chi2: 1.5926904171847511
[2025-06-05 12:48:10] 2025-06-05 12:47:57,079 | INFO     | current chi2=1.5926904171847511 (change=-0.1115864791455781 %)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | right removable region: 154
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | sum of square deviations: 1270051720.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | sum of deviations: -14748524490.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | mean x: 1749122819.5
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | mean y: 2675594.125
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | -- intersect: 20314431669.23476
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | intersect: 20314431669.23476
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | chi2: 1.0653897817965292
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | current chi2=1.0653897817965292 (change=58.6691289473082 %)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,080 | INFO     | sum of square deviations: 1154663510.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | sum of deviations: -11722786996.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | mean x: 1749122972.0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | mean y: 2671580.6774193547
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | -- intersect: 17760742094.71529
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | intersect: 17760742094.71529
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | chi2: 1.057985007630631
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | current chi2=1.057985007630631 (change=0.6950295837652801 %)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | left removable region: 20
[2025-06-05 12:48:10] 2025-06-05 12:47:57,081 | INFO     | sum of square deviations: 746051197.5
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | sum of deviations: 4206156484.9999995
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | mean x: 1749122941.5
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | mean y: 2679949.970149254
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | -- intersect: -9858687243.200933
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | intersect: -9858687243.200933
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | chi2: 0.0007573864537411694
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | -- intersect: -9858687243.200933
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | current memory leak: 5.64 B/s (using 134 data points, chi2=0.00)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | ..............................
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . Timing measurements:
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . get job = 0 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . initial setup = 1 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . payload setup = 2 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . stage-in = 0 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . payload execution = 10006 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,082 | INFO     | . stage-out = 0 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,083 | INFO     | . log creation = 0 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,083 | INFO     | ..............................
[2025-06-05 12:48:10] 2025-06-05 12:47:57,401 | INFO     | 
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | job summary report
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | --------------------------------------------------
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | PanDA job id: 6677861953
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | task id: 45006595
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | errors: (none)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | pilot state: finished 
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | transexitcode: 0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | exeerrorcode: 0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | exeerrordiag: 
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | exitcode: 0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | exitmsg: OK
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | cpuconsumptiontime: 37832 s
[2025-06-05 12:48:10] 2025-06-05 12:47:57,403 | INFO     | nevents: 400
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | neventsw: 0
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | pid: 1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | pgrp: 1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | corecount: 12
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | event service: False
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | sizes: {0: 2397138, 1: 2397393, 2: 2397599, 11: 2397627, 10012: 2426069, 10013: 2435240, 10017: 2435354}
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | --------------------------------------------------
[2025-06-05 12:48:10] 2025-06-05 12:47:57,404 | INFO     | 
[2025-06-05 12:48:10] 2025-06-05 12:47:57,405 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 12:48:10] 2025-06-05 12:47:57,417 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,417 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,417 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,418 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,419 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:48:10] 2025-06-05 12:47:57,419 | INFO     | job 6677861953 has completed (purged errors)
[2025-06-05 12:48:10] 2025-06-05 12:47:57,419 | INFO     | overall cleanup function is called
[2025-06-05 12:48:10] 2025-06-05 12:47:58,423 | INFO     | --- collectZombieJob: --- 10, [1155178]
[2025-06-05 12:48:10] 2025-06-05 12:47:58,423 | INFO     | zombie collector waiting for pid 1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:58,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:48:10] 2025-06-05 12:47:58,423 | INFO     | collected zombie processes
[2025-06-05 12:48:10] 2025-06-05 12:47:58,424 | INFO     | will attempt to kill all subprocesses of pid=1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:58,508 | INFO     | process IDs to be killed: [1155178] (in reverse order)
[2025-06-05 12:48:10] 2025-06-05 12:47:58,530 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:48:10] 2025-06-05 12:47:58,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:48:10] 2025-06-05 12:47:58,531 | INFO     | did not find any defunct processes belonging to 1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:58,532 | INFO     | did not find any defunct processes belonging to 1155178
[2025-06-05 12:48:10] 2025-06-05 12:47:58,532 | INFO     | ready for new job
[2025-06-05 12:48:10] 2025-06-05 12:47:58,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:48:10] 2025-06-05 12:47:58,533 | INFO     | **************************************
[2025-06-05 12:48:10] 2025-06-05 12:47:58,533 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:48:10] 2025-06-05 12:47:58,533 | INFO     | **************************************
[2025-06-05 12:48:10] 2025-06-05 12:47:58,533 | INFO     | 
[2025-06-05 12:48:10] 2025-06-05 12:47:58,551 | INFO     | architecture information:
[2025-06-05 12:48:10] 2025-06-05 12:47:58,551 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:48:10] 2025-06-05 12:47:58,557 | INFO     | cat /etc/os-release:
[2025-06-05 12:48:10] NAME="CentOS Linux"
[2025-06-05 12:48:10] VERSION="7 (Core)"
[2025-06-05 12:48:10] ID="centos"
[2025-06-05 12:48:10] ID_LIKE="rhel fedora"
[2025-06-05 12:48:10] VERSION_ID="7"
[2025-06-05 12:48:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:48:10] ANSI_COLOR="0;31"
[2025-06-05 12:48:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:48:10] HOME_URL="https://www.centos.org/"
[2025-06-05 12:48:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:48:10] 
[2025-06-05 12:48:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:48:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:48:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:48:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:48:10] 
[2025-06-05 12:48:10] 2025-06-05 12:47:58,557 | INFO     | **************************************
[2025-06-05 12:48:10] 2025-06-05 12:47:59,060 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | INFO     | sufficient remaining disk space (71595720704 B)
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | INFO     | update_server=False
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 12:48:10] 2025-06-05 12:47:59,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:48:10] 2025-06-05 12:47:59,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:48:10] 2025-06-05 12:47:59,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:48:10] 2025-06-05 12:47:59,071 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:48:10] 2025-06-05 12:47:59,071 | INFO     | aborting loop
[2025-06-05 12:48:10] 2025-06-05 12:47:59,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:48:10] 2025-06-05 12:47:59,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:48:10] 2025-06-05 12:47:59,228 | INFO     | all payload control threads have been joined
[2025-06-05 12:48:10] 2025-06-05 12:47:59,618 | INFO     | all data control threads have been joined
[2025-06-05 12:48:10] 2025-06-05 12:47:59,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:48:10] 2025-06-05 12:48:00,076 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,077 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,078 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,234 | INFO     | [payload] control thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,289 | INFO     | all job control threads have been joined
[2025-06-05 12:48:10] 2025-06-05 12:48:00,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,403 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,528 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,600 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:00,623 | INFO     | [data] control thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,002 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,019 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,077 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,295 | INFO     | [job] control thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,334 | INFO     | [job] validate thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:01,572 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:03,908 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:48:10] 2025-06-05 12:48:05,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140120033826624)>', '<ExcThread(monitor, started 140119600256768)>']
[2025-06-05 12:48:10] 2025-06-05 12:48:06,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:48:10] 2025-06-05 12:48:06,105 | INFO     | [monitor] control thread has ended
[2025-06-05 12:48:10] 2025-06-05 12:48:10,371 | INFO     | all workflow threads have been joined
[2025-06-05 12:48:10] 2025-06-05 12:48:10,372 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:48:10] 2025-06-05 12:48:10,372 | INFO     | traces error code: 0
[2025-06-05 12:48:10] 2025-06-05 12:48:10,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:48:10] 2025-06-05 12:48:10,480 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:48:10] 2025-06-05 12:48:10,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:48:10] 2025-06-05 12:48:10,483 [wrapper] pilotpid: 1148663
[2025-06-05 12:48:10] 2025-06-05 12:48:10,484 [wrapper] Pilot exit status: 0
[2025-06-05 12:48:10] 2025-06-05 12:48:10,488 [wrapper] pandaids: 6677861953
[2025-06-05 12:48:10] 2025-06-05 12:48:10,497 [wrapper] cleanup supervisor_pilot 1185856 1148664
[2025-06-05 12:48:10] 2025-06-05 12:48:10,498 [wrapper] Test setup, not cleaning
[2025-06-05 12:48:10] 2025-06-05 12:48:10,499 [wrapper] apfmon messages muted
[2025-06-05 12:48:10] 2025-06-05 12:48:10,500 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:48:10] 2025-06-05 12:48:10,502 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:48:10]  *** Error codes and diagnostics ***
[2025-06-05 12:48:10]     "exeErrorCode": 0,
[2025-06-05 12:48:10]     "exeErrorDiag": "",
[2025-06-05 12:48:10]     "pilotErrorCode": 0,
[2025-06-05 12:48:10]     "pilotErrorDiag": "",
[2025-06-05 12:48:10]  *** Listing of results directory ***
[2025-06-05 12:48:10] total 394996
[2025-06-05 12:48:10] -rw-r--r-- 1 boinc boinc    495897 Jun  3 16:58 pilot3.tar.gz
[2025-06-05 12:48:10] -rw-r--r-- 1 boinc boinc      5111 Jun  3 17:16 queuedata.json
[2025-06-05 12:48:10] -rwx------ 1 boinc boinc     37140 Jun  3 17:18 runpilot2-wrapper.sh
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc       100 Jun  5 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:48:10] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 10:00 run_atlas
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc       105 Jun  5 10:00 job.xml
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc     15093 Jun  5 10:00 start_atlas.sh
[2025-06-05 12:48:10] drwxrwx--x 2 boinc boinc      4096 Jun  5 10:00 shared
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc    508884 Jun  5 10:00 input.tar.gz
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc      9360 Jun  5 10:00 init_data.xml
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc 215158309 Jun  5 10:00 EVNT.45006593._001607.pool.root.1
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc         0 Jun  5 10:00 boinc_lockfile
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 10:00 pandaJob.out
[2025-06-05 12:48:10] -rw------- 1 boinc boinc    983289 Jun  5 10:00 agis_schedconf.cvmfs.json
[2025-06-05 12:48:10] -rw------- 1 boinc boinc   1598969 Jun  5 10:00 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:48:10] drwx------ 4 boinc boinc      4096 Jun  5 10:00 pilot3
[2025-06-05 12:48:10] -rw------- 1 boinc boinc        95 Jun  5 12:47 pilot_heartbeat.json
[2025-06-05 12:48:10] -rw------- 1 boinc boinc 182735977 Jun  5 12:47 HITS.45006595._040104.pool.root.1
[2025-06-05 12:48:10] -rw------- 1 boinc boinc      1020 Jun  5 12:47 memory_monitor_summary.json
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc       530 Jun  5 12:47 boinc_task_state.xml
[2025-06-05 12:48:10] -rw------- 1 boinc boinc    413868 Jun  5 12:47 log.45006595._040104.job.log.tgz.1
[2025-06-05 12:48:10] -rw------- 1 boinc boinc      7657 Jun  5 12:47 heartbeat.json
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 12:48 boinc_mmap_file
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc        28 Jun  5 12:48 wrapper_checkpoint.txt
[2025-06-05 12:48:10] -rw------- 1 boinc boinc      4499 Jun  5 12:48 pilotlog.txt
[2025-06-05 12:48:10] -rw------- 1 boinc boinc    955096 Jun  5 12:48 log.45006595._040104.job.log.1
[2025-06-05 12:48:10] -rw------- 1 boinc boinc       357 Jun  5 12:48 output.list
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc       620 Jun  5 12:48 runtime_log
[2025-06-05 12:48:10] -rw------- 1 boinc boinc   1392640 Jun  5 12:48 result.tar.gz
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc      8954 Jun  5 12:48 runtime_log.err
[2025-06-05 12:48:10] -rw------- 1 boinc boinc       651 Jun  5 12:48 CmiNDmRSkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUJlKDmLVv1fm.diag
[2025-06-05 12:48:10] -rw-rw-r-- 1 boinc boinc     20993 Jun  5 12:48 stderr.txt
[2025-06-05 12:48:10] HITS file was successfully produced:
[2025-06-05 12:48:10] -rw------- 1 boinc boinc 182735977 Jun  5 12:47 shared/HITS.pool.root.1
[2025-06-05 12:48:10]  *** Contents of shared directory: ***
[2025-06-05 12:48:10] total 390456
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc     15093 Jun  5 10:00 start_atlas.sh
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc    508884 Jun  5 10:00 input.tar.gz
[2025-06-05 12:48:10] -rw-r--r-- 2 boinc boinc 215158309 Jun  5 10:00 ATLAS.root_0
[2025-06-05 12:48:10] -rw------- 1 boinc boinc 182735977 Jun  5 12:47 HITS.pool.root.1
[2025-06-05 12:48:10] -rw------- 1 boinc boinc   1392640 Jun  5 12:48 result.tar.gz
12:48:12 (1145021): run_atlas exited; CPU time 37902.928827
12:48:12 (1145021): called boinc_finish(0)

</stderr_txt>
]]>

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