Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:50:47 (10646): wrapper (7.7.26015): starting
08:50:47 (10646): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:50:47] Arguments: --nthreads 8
[2025-06-04 08:50:47] Threads: 8
[2025-06-04 08:50:47] Checking for CVMFS
[2025-06-04 08:50:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:50:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:50:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:50:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:50:49] 2.11.2.0 32329 32983 92108 146771 0 50 13446798 25165824 4139 130560 0 17088936 99.798 19824270 2254 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 08:50:49] CVMFS is ok
[2025-06-04 08:50:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:50:49] Checking for apptainer binary...
[2025-06-04 08:50:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:50:49] Running /usr/bin/apptainer --version
[2025-06-04 08:50:50] apptainer version 1.3.2-1.el7
[2025-06-04 08:50:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:50:59] cg-vwn362.simple-grid.lan
[2025-06-04 08:50:59] apptainer works
[2025-06-04 08:50:59] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:50:59] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:50:59] Starting ATLAS job with PandaID=6678014731
[2025-06-04 08:50:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:47:18]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:47:18] 2025-06-04 10:46:07,741 | INFO     | extracted standard info from prmon json
[2025-06-04 12:47:18] 2025-06-04 10:46:07,741 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:47:18] 2025-06-04 10:46:07,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:47:18] 2025-06-04 10:46:07,742 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:47:18] 2025-06-04 10:46:07,742 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:47:18] 2025-06-04 10:46:07,747 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:47:18] 2025-06-04 10:46:07,747 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,749 | INFO     | sum of deviations: 95839234268.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,750 | INFO     | mean x: 1749027197.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,750 | INFO     | mean y: 2405273.5251141554
[2025-06-04 12:47:18] 2025-06-04 10:46:07,750 | INFO     | -- intersect: -51465700477.64204
[2025-06-04 12:47:18] 2025-06-04 10:46:07,750 | INFO     | intersect: -51465700477.64204
[2025-06-04 12:47:18] 2025-06-04 10:46:07,750 | INFO     | chi2: 6.725763696215938
[2025-06-04 12:47:18] 2025-06-04 10:46:07,751 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,752 | INFO     | sum of deviations: 107776477347.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | mean x: 1749027044.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | mean y: 2413436.228971963
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | -- intersect: -62028796007.7894
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | intersect: -62028796007.7894
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | chi2: 6.009294714813747
[2025-06-04 12:47:18] 2025-06-04 10:46:07,753 | INFO     | current chi2=6.009294714813747 (change=10.652604131859281 %)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,754 | INFO     | right removable region: 213
[2025-06-04 12:47:18] 2025-06-04 10:46:07,754 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | sum of deviations: 21474452809.999992
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | mean x: 1749027349.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | mean y: 2457239.76635514
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | -- intersect: -12357257468.207956
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | intersect: -12357257468.207956
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | chi2: 1.975237780036683
[2025-06-04 12:47:18] 2025-06-04 10:46:07,756 | INFO     | current chi2=1.975237780036683 (change=70.6317695766208 %)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,757 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,758 | INFO     | sum of deviations: -12137181224.000002
[2025-06-04 12:47:18] 2025-06-04 10:46:07,758 | INFO     | mean x: 1749027502.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,759 | INFO     | mean y: 2481707.8325358853
[2025-06-04 12:47:18] 2025-06-04 10:46:07,759 | INFO     | -- intersect: 7501547006.080458
[2025-06-04 12:47:18] 2025-06-04 10:46:07,759 | INFO     | intersect: 7501547006.080458
[2025-06-04 12:47:18] 2025-06-04 10:46:07,759 | INFO     | chi2: 0.8388363131552983
[2025-06-04 12:47:18] 2025-06-04 10:46:07,759 | INFO     | current chi2=0.8388363131552983 (change=57.53238816950332 %)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,760 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,761 | INFO     | sum of deviations: -9296240363.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,761 | INFO     | mean x: 1749027654.5
[2025-06-04 12:47:18] 2025-06-04 10:46:07,761 | INFO     | mean y: 2479478.4411764704
[2025-06-04 12:47:18] 2025-06-04 10:46:07,761 | INFO     | -- intersect: 6179023345.749151
[2025-06-04 12:47:18] 2025-06-04 10:46:07,761 | INFO     | intersect: 6179023345.749151
[2025-06-04 12:47:18] 2025-06-04 10:46:07,762 | INFO     | chi2: 0.8156391360900331
[2025-06-04 12:47:18] 2025-06-04 10:46:07,762 | INFO     | current chi2=0.8156391360900331 (change=2.7653997211933437 %)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,762 | INFO     | left removable region: 30
[2025-06-04 12:47:18] 2025-06-04 10:46:07,762 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,764 | INFO     | sum of deviations: 3147141890.000001
[2025-06-04 12:47:18] 2025-06-04 10:46:07,764 | INFO     | mean x: 1749027929.0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,764 | INFO     | mean y: 2491123.464480874
[2025-06-04 12:47:18] 2025-06-04 10:46:07,764 | INFO     | -- intersect: -2894147674.982744
[2025-06-04 12:47:18] 2025-06-04 10:46:07,764 | INFO     | intersect: -2894147674.982744
[2025-06-04 12:47:18] 2025-06-04 10:46:07,765 | INFO     | chi2: 0.0005623871217618953
[2025-06-04 12:47:18] 2025-06-04 10:46:07,765 | INFO     | -- intersect: -2894147674.982744
[2025-06-04 12:47:18] 2025-06-04 10:46:07,765 | INFO     | current memory leak: 1.66 B/s (using 183 data points, chi2=0.00)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,766 | INFO     | ..............................
[2025-06-04 12:47:18] 2025-06-04 10:46:07,766 | INFO     | . Timing measurements:
[2025-06-04 12:47:18] 2025-06-04 10:46:07,766 | INFO     | . get job = 0 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,766 | INFO     | . initial setup = 7 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,766 | INFO     | . payload setup = 166 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,767 | INFO     | . stage-in = 0 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,767 | INFO     | . payload execution = 13487 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,767 | INFO     | . stage-out = 4 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,767 | INFO     | . log creation = 1 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,767 | INFO     | ..............................
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | 
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | job summary report
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | --------------------------------------------------
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | PanDA job id: 6678014731
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | task id: 45006595
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | errors: (none)
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:47:18] 2025-06-04 10:46:07,900 | INFO     | pilot state: finished 
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | transexitcode: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | exeerrorcode: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | exeerrordiag: 
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | exitcode: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | exitmsg: OK
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | cpuconsumptiontime: 48362 s
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | nevents: 400
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | neventsw: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | pid: 26917
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | pgrp: 26917
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | corecount: 8
[2025-06-04 12:47:18] 2025-06-04 10:46:07,901 | INFO     | event service: False
[2025-06-04 12:47:18] 2025-06-04 10:46:07,902 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 91: 2405798, 98: 2406106, 1
[2025-06-04 12:47:18] 2025-06-04 10:46:07,902 | INFO     | --------------------------------------------------
[2025-06-04 12:47:18] 2025-06-04 10:46:07,902 | INFO     | 
[2025-06-04 12:47:18] 2025-06-04 10:46:07,902 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-04 12:47:18] 2025-06-04 10:46:08,225 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,225 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | job 6678014731 has completed (purged errors)
[2025-06-04 12:47:18] 2025-06-04 10:46:08,227 | INFO     | overall cleanup function is called
[2025-06-04 12:47:18] 2025-06-04 10:46:09,236 | INFO     | --- collectZombieJob: --- 10, [26917]
[2025-06-04 12:47:18] 2025-06-04 10:46:09,236 | INFO     | zombie collector waiting for pid 26917
[2025-06-04 12:47:18] 2025-06-04 10:46:09,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:47:18] 2025-06-04 10:46:09,236 | INFO     | collected zombie processes
[2025-06-04 12:47:18] 2025-06-04 10:46:09,236 | INFO     | will attempt to kill all subprocesses of pid=26917
[2025-06-04 12:47:18] 2025-06-04 10:46:09,369 | INFO     | process IDs to be killed: [26917] (in reverse order)
[2025-06-04 12:47:18] 2025-06-04 10:46:09,498 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:47:18] 2025-06-04 10:46:09,498 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:47:18] 2025-06-04 10:46:09,503 | INFO     | did not find any defunct processes belonging to 26917
[2025-06-04 12:47:18] 2025-06-04 10:46:09,507 | INFO     | did not find any defunct processes belonging to 26917
[2025-06-04 12:47:18] 2025-06-04 10:46:09,507 | INFO     | ready for new job
[2025-06-04 12:47:18] 2025-06-04 10:46:09,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:47:18] 2025-06-04 10:46:09,510 | INFO     | **************************************
[2025-06-04 12:47:18] 2025-06-04 10:46:09,510 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:47:18] 2025-06-04 10:46:09,510 | INFO     | **************************************
[2025-06-04 12:47:18] 2025-06-04 10:46:09,510 | INFO     | 
[2025-06-04 12:47:18] 2025-06-04 10:46:09,511 | INFO     | pilot is running in a VM
[2025-06-04 12:47:18] 2025-06-04 10:46:09,511 | INFO     | architecture information:
[2025-06-04 12:47:18] 2025-06-04 10:46:09,511 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:47:18] 2025-06-04 10:46:09,609 | INFO     | cat /etc/os-release:
[2025-06-04 12:47:18] NAME="CentOS Linux"
[2025-06-04 12:47:18] VERSION="7 (Core)"
[2025-06-04 12:47:18] ID="centos"
[2025-06-04 12:47:18] ID_LIKE="rhel fedora"
[2025-06-04 12:47:18] VERSION_ID="7"
[2025-06-04 12:47:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:47:18] ANSI_COLOR="0;31"
[2025-06-04 12:47:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:47:18] HOME_URL="https://www.centos.org/"
[2025-06-04 12:47:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:47:18] 
[2025-06-04 12:47:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:47:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:47:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:47:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:47:18] 
[2025-06-04 12:47:18] 2025-06-04 10:46:09,610 | INFO     | **************************************
[2025-06-04 12:47:18] 2025-06-04 10:46:09,927 | INFO     | 13936s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 12:47:18] 2025-06-04 10:46:10,112 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-04 12:47:18] 2025-06-04 10:46:10,417 | INFO     | sufficient remaining disk space (496226009088 B)
[2025-06-04 12:47:18] 2025-06-04 10:46:10,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:47:18] 2025-06-04 10:46:10,418 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:47:18] 2025-06-04 10:46:10,418 | INFO     | update_server=False
[2025-06-04 12:47:18] 2025-06-04 10:46:10,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:47:18] 2025-06-04 10:46:10,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:47:18] 2025-06-04 10:46:10,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:47:18] 2025-06-04 10:46:10,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:47:18] 2025-06-04 10:46:10,426 | INFO     | aborting loop
[2025-06-04 12:47:18] 2025-06-04 10:46:10,652 | INFO     | all data control threads have been joined
[2025-06-04 12:47:18] 2025-06-04 10:46:10,933 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:47:18] 2025-06-04 10:46:10,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:47:18] 2025-06-04 10:46:10,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:47:18] 2025-06-04 10:46:11,271 | INFO     | all payload control threads have been joined
[2025-06-04 12:47:18] 2025-06-04 10:46:11,319 | INFO     | all job control threads have been joined
[2025-06-04 12:47:18] 2025-06-04 10:46:11,423 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:11,432 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:11,658 | INFO     | [data] control thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:11,924 | INFO     | [job] validate thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:11,982 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,120 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,129 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,209 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,277 | INFO     | [payload] control thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,308 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,325 | INFO     | [job] control thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,401 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,427 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:12,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:47:18] 2025-06-04 10:46:13,019 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:13,914 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:14,430 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:47:18] 2025-06-04 10:46:16,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685392918336)>', '<ExcThread(monitor, started 140684707215104)>']
[2025-06-04 12:47:18] 2025-06-04 10:46:16,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:47:18] 2025-06-04 10:46:16,972 | INFO     | [monitor] control thread has ended
[2025-06-04 12:47:18] 2025-06-04 10:46:21,124 | INFO     | all workflow threads have been joined
[2025-06-04 12:47:18] 2025-06-04 10:46:21,124 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:47:18] 2025-06-04 10:46:21,124 | INFO     | traces error code: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:21,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:47:18] 2025-06-04 10:46:21,564 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:47:18] 2025-06-04 10:46:21,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:47:18] 2025-06-04 10:46:21,708 [wrapper] pilotpid: 18281
[2025-06-04 12:47:18] 2025-06-04 10:46:21,767 [wrapper] Pilot exit status: 0
[2025-06-04 12:47:18] 2025-06-04 10:46:22,264 [wrapper] pandaids: 6678014731
[2025-06-04 12:47:18] 2025-06-04 10:46:22,877 [wrapper] cleanup supervisor_pilot  4920 18282
[2025-06-04 12:47:18] 2025-06-04 10:46:22,937 [wrapper] Test setup, not cleaning
[2025-06-04 12:47:18] 2025-06-04 10:46:23,035 [wrapper] apfmon messages muted
[2025-06-04 12:47:18] 2025-06-04 10:46:23,133 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:47:18] 2025-06-04 10:46:23,251 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:47:18]  *** Error codes and diagnostics ***
[2025-06-04 12:47:18]     "exeErrorCode": 0,
[2025-06-04 12:47:18]     "exeErrorDiag": "",
[2025-06-04 12:47:18]     "pilotErrorCode": 0,
[2025-06-04 12:47:18]     "pilotErrorDiag": "",
[2025-06-04 12:47:18]  *** Listing of results directory ***
[2025-06-04 12:47:18] total 386052
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:01 queuedata.json
[2025-06-04 12:47:18] -rwx------. 1 boinc boinc     37140 Jun  3 22:02 runpilot2-wrapper.sh
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc       100 Jun  4 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:47:18] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 08:50 run_atlas
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc       105 Jun  4 08:50 job.xml
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc      6392 Jun  4 08:50 init_data.xml
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc 215620082 Jun  4 08:50 EVNT.45006593._001776.pool.root.1
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:50 start_atlas.sh
[2025-06-04 12:47:18] drwxrwx--x. 2 boinc boinc        68 Jun  4 08:50 shared
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc    508877 Jun  4 08:50 input.tar.gz
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc         0 Jun  4 08:50 boinc_lockfile
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc      2525 Jun  4 08:50 pandaJob.out
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc    986745 Jun  4 08:53 agis_schedconf.cvmfs.json
[2025-06-04 12:47:18] drwx------. 4 boinc boinc      4096 Jun  4 08:54 pilot3
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc 172720422 Jun  4 12:43 HITS.45006595._044326.pool.root.1
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc       531 Jun  4 12:43 boinc_task_state.xml
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc      1017 Jun  4 12:44 memory_monitor_summary.json
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc   1603667 Jun  4 12:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc    383459 Jun  4 12:44 log.45006595._044326.job.log.tgz.1
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc        95 Jun  4 12:45 pilot_heartbeat.json
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc      7684 Jun  4 12:46 heartbeat.json
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc      4532 Jun  4 12:46 pilotlog.txt
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc   1194658 Jun  4 12:46 log.45006595._044326.job.log.1
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc       357 Jun  4 12:46 output.list
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc       620 Jun  4 12:46 runtime_log
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc   1597440 Jun  4 12:46 result.tar.gz
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc      8659 Jun  4 12:46 runtime_log.err
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc       657 Jun  4 12:46 kfCODm00mg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUpZKDmcU6aHm.diag
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc        28 Jun  4 12:47 wrapper_checkpoint.txt
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc      8192 Jun  4 12:47 boinc_mmap_file
[2025-06-04 12:47:18] -rw-r--r--. 1 boinc boinc     20497 Jun  4 12:47 stderr.txt
[2025-06-04 12:47:18] HITS file was successfully produced:
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc 172720422 Jun  4 12:43 shared/HITS.pool.root.1
[2025-06-04 12:47:18]  *** Contents of shared directory: ***
[2025-06-04 12:47:18] total 381320
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc 215620082 Jun  4 08:50 ATLAS.root_0
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:50 start_atlas.sh
[2025-06-04 12:47:18] -rw-r--r--. 2 boinc boinc    508877 Jun  4 08:50 input.tar.gz
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc 172720422 Jun  4 12:43 HITS.pool.root.1
[2025-06-04 12:47:18] -rw-------. 1 boinc boinc   1597440 Jun  4 12:46 result.tar.gz
12:47:20 (10646): run_atlas exited; CPU time 48559.383419
12:47:20 (10646): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN