Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:56:56 (12619): wrapper (7.7.26015): starting
06:56:56 (12619): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:56:56] Arguments: --nthreads 8
[2025-06-04 06:56:56] Threads: 8
[2025-06-04 06:56:56] Checking for CVMFS
[2025-06-04 06:56:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:56:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:56:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:56:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:56:58] 2.11.2.0 5342 32772 91304 146768 2 16 22290828 25165825 3911 130560 0 16877092 99.799 19648140 2188 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:56:58] CVMFS is ok
[2025-06-04 06:56:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:56:58] Checking for apptainer binary...
[2025-06-04 06:56:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:56:58] Running /usr/bin/apptainer --version
[2025-06-04 06:56:58] apptainer version 1.3.2-1.el7
[2025-06-04 06:56:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:57:07] cg-vwn390.simple-grid.lan
[2025-06-04 06:57:07] apptainer works
[2025-06-04 06:57:07] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:57:07] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:57:07] Starting ATLAS job with PandaID=6677919118
[2025-06-04 06:57:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:02:48]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:02:48] 2025-06-04 08:53:45,599 | INFO     | extracted standard info from prmon json
[2025-06-04 11:02:48] 2025-06-04 08:53:45,600 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:02:48] 2025-06-04 08:53:45,600 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:02:48] 2025-06-04 08:53:45,600 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:02:48] 2025-06-04 08:53:45,600 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:02:48] 2025-06-04 08:53:45,605 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:02:48] 2025-06-04 08:53:45,606 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,611 | INFO     | sum of deviations: 83288402650.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,611 | INFO     | mean x: 1749020391.5
[2025-06-04 11:02:48] 2025-06-04 08:53:45,611 | INFO     | mean y: 2428848.036363636
[2025-06-04 11:02:48] 2025-06-04 08:53:45,611 | INFO     | -- intersect: -44118222227.79997
[2025-06-04 11:02:48] 2025-06-04 08:53:45,612 | INFO     | intersect: -44118222227.79997
[2025-06-04 11:02:48] 2025-06-04 08:53:45,612 | INFO     | chi2: 7.220563736749131
[2025-06-04 11:02:48] 2025-06-04 08:53:45,613 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,616 | INFO     | sum of deviations: 96119940408.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,617 | INFO     | mean x: 1749020239.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,617 | INFO     | mean y: 2437552.172093023
[2025-06-04 11:02:48] 2025-06-04 08:53:45,617 | INFO     | -- intersect: -54551225815.68762
[2025-06-04 11:02:48] 2025-06-04 08:53:45,617 | INFO     | intersect: -54551225815.68762
[2025-06-04 11:02:48] 2025-06-04 08:53:45,617 | INFO     | chi2: 6.489054794997252
[2025-06-04 11:02:48] 2025-06-04 08:53:45,618 | INFO     | current chi2=6.489054794997252 (change=10.130911773949961 %)
[2025-06-04 11:02:48] 2025-06-04 08:53:45,618 | INFO     | right removable region: 214
[2025-06-04 11:02:48] 2025-06-04 08:53:45,618 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,620 | INFO     | sum of deviations: 7851475188.000008
[2025-06-04 11:02:48] 2025-06-04 08:53:45,620 | INFO     | mean x: 1749020544.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,620 | INFO     | mean y: 2481080.1581395348
[2025-06-04 11:02:48] 2025-06-04 08:53:45,620 | INFO     | -- intersect: -4453689067.49475
[2025-06-04 11:02:48] 2025-06-04 08:53:45,620 | INFO     | intersect: -4453689067.49475
[2025-06-04 11:02:48] 2025-06-04 08:53:45,621 | INFO     | chi2: 2.3931600388683054
[2025-06-04 11:02:48] 2025-06-04 08:53:45,621 | INFO     | current chi2=2.3931600388683054 (change=66.85632692793371 %)
[2025-06-04 11:02:48] 2025-06-04 08:53:45,624 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 11:02:48] 2025-06-04 08:53:45,626 | INFO     | sum of deviations: -31461544494.499992
[2025-06-04 11:02:48] 2025-06-04 08:53:45,627 | INFO     | mean x: 1749020696.5
[2025-06-04 11:02:48] 2025-06-04 08:53:45,627 | INFO     | mean y: 2509466.776190476
[2025-06-04 11:02:48] 2025-06-04 08:53:45,627 | INFO     | -- intersect: 19164848841.0367
[2025-06-04 11:02:48] 2025-06-04 08:53:45,627 | INFO     | intersect: 19164848841.0367
[2025-06-04 11:02:48] 2025-06-04 08:53:45,630 | INFO     | chi2: 0.9412294693009428
[2025-06-04 11:02:48] 2025-06-04 08:53:45,631 | INFO     | current chi2=0.9412294693009428 (change=60.67001562728591 %)
[2025-06-04 11:02:48] 2025-06-04 08:53:45,631 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,633 | INFO     | sum of deviations: -38106612831.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,633 | INFO     | mean x: 1749020849.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,633 | INFO     | mean y: 2514492.156097561
[2025-06-04 11:02:48] 2025-06-04 08:53:45,634 | INFO     | -- intersect: 24952233634.07116
[2025-06-04 11:02:48] 2025-06-04 08:53:45,634 | INFO     | intersect: 24952233634.07116
[2025-06-04 11:02:48] 2025-06-04 08:53:45,634 | INFO     | chi2: 0.8750116528537917
[2025-06-04 11:02:48] 2025-06-04 08:53:45,634 | INFO     | current chi2=0.8750116528537917 (change=7.035246834794864 %)
[2025-06-04 11:02:48] 2025-06-04 08:53:45,634 | INFO     | left removable region: 30
[2025-06-04 11:02:48] 2025-06-04 08:53:45,635 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 11:02:48] 2025-06-04 08:53:45,636 | INFO     | sum of deviations: -16541351577.999996
[2025-06-04 11:02:48] 2025-06-04 08:53:45,640 | INFO     | mean x: 1749021123.5
[2025-06-04 11:02:48] 2025-06-04 08:53:45,640 | INFO     | mean y: 2519970.6195652173
[2025-06-04 11:02:48] 2025-06-04 08:53:45,640 | INFO     | -- intersect: 14980283925.860601
[2025-06-04 11:02:48] 2025-06-04 08:53:45,640 | INFO     | intersect: 14980283925.860601
[2025-06-04 11:02:48] 2025-06-04 08:53:45,640 | INFO     | chi2: 0.05413913011067826
[2025-06-04 11:02:48] 2025-06-04 08:53:45,641 | INFO     | -- intersect: 14980283925.860601
[2025-06-04 11:02:48] 2025-06-04 08:53:45,641 | INFO     | current memory leak: -8.56 B/s (using 184 data points, chi2=0.05)
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | ..............................
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . Timing measurements:
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . get job = 0 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . initial setup = 6 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . payload setup = 165 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . stage-in = 0 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . payload execution = 13563 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . stage-out = 5 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,642 | INFO     | . log creation = 1 s
[2025-06-04 11:02:48] 2025-06-04 08:53:45,643 | INFO     | ..............................
[2025-06-04 11:02:48] 2025-06-04 08:53:46,140 | INFO     | 
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | job summary report
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | --------------------------------------------------
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | PanDA job id: 6677919118
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | task id: 45006595
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | errors: (none)
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | pilot state: finished 
[2025-06-04 11:02:48] 2025-06-04 08:53:46,141 | INFO     | transexitcode: 0
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | exeerrorcode: 0
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | exeerrordiag: 
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | exitcode: 0
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | exitmsg: OK
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | cpuconsumptiontime: 49847 s
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | nevents: 400
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | neventsw: 0
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | pid: 26438
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | pgrp: 26438
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | corecount: 8
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | event service: False
[2025-06-04 11:02:48] 2025-06-04 08:53:46,142 | INFO     | sizes: {0: 2405014, 1: 2405213, 12: 2405213, 23: 2405241, 33: 2405269, 44: 2405325, 55: 2405481, 66: 2405509, 76: 2405537, 85: 2405799, 87: 2405827, 13733: 2435682
[2025-06-04 11:02:48] 2025-06-04 08:53:46,143 | INFO     | --------------------------------------------------
[2025-06-04 11:02:48] 2025-06-04 08:53:46,143 | INFO     | 
[2025-06-04 11:02:48] 2025-06-04 08:53:46,143 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 11:02:48] 2025-06-04 08:53:46,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,733 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,733 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:02:48] 2025-06-04 08:53:46,735 | INFO     | job 6677919118 has completed (purged errors)
[2025-06-04 11:02:48] 2025-06-04 08:53:46,736 | INFO     | overall cleanup function is called
[2025-06-04 11:02:48] 2025-06-04 08:53:47,744 | INFO     | --- collectZombieJob: --- 10, [26438]
[2025-06-04 11:02:48] 2025-06-04 08:53:47,745 | INFO     | zombie collector waiting for pid 26438
[2025-06-04 11:02:48] 2025-06-04 08:53:47,745 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:02:48] 2025-06-04 08:53:47,745 | INFO     | collected zombie processes
[2025-06-04 11:02:48] 2025-06-04 08:53:47,745 | INFO     | will attempt to kill all subprocesses of pid=26438
[2025-06-04 11:02:48] 2025-06-04 08:53:47,866 | INFO     | process IDs to be killed: [26438] (in reverse order)
[2025-06-04 11:02:48] 2025-06-04 08:53:48,824 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:02:48] 2025-06-04 08:53:48,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:02:48] 2025-06-04 08:53:48,828 | INFO     | did not find any defunct processes belonging to 26438
[2025-06-04 11:02:48] 2025-06-04 08:53:48,831 | INFO     | did not find any defunct processes belonging to 26438
[2025-06-04 11:02:48] 2025-06-04 08:53:48,832 | INFO     | ready for new job
[2025-06-04 11:02:48] 2025-06-04 08:53:48,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:02:48] 2025-06-04 08:53:48,834 | INFO     | **************************************
[2025-06-04 11:02:48] 2025-06-04 08:53:48,834 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:02:48] 2025-06-04 08:53:48,834 | INFO     | **************************************
[2025-06-04 11:02:48] 2025-06-04 08:53:48,835 | INFO     | 
[2025-06-04 11:02:48] 2025-06-04 08:53:48,835 | INFO     | pilot is running in a VM
[2025-06-04 11:02:48] 2025-06-04 08:53:48,835 | INFO     | architecture information:
[2025-06-04 11:02:48] 2025-06-04 08:53:48,838 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:02:48] 2025-06-04 08:53:49,069 | INFO     | cat /etc/os-release:
[2025-06-04 11:02:48] NAME="CentOS Linux"
[2025-06-04 11:02:48] VERSION="7 (Core)"
[2025-06-04 11:02:48] ID="centos"
[2025-06-04 11:02:48] ID_LIKE="rhel fedora"
[2025-06-04 11:02:48] VERSION_ID="7"
[2025-06-04 11:02:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:02:48] ANSI_COLOR="0;31"
[2025-06-04 11:02:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:02:48] HOME_URL="https://www.centos.org/"
[2025-06-04 11:02:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:02:48] 
[2025-06-04 11:02:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:02:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:02:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:02:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:02:48] 
[2025-06-04 11:02:48] 2025-06-04 08:53:49,069 | INFO     | **************************************
[2025-06-04 11:02:48] 2025-06-04 08:53:49,573 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 11:02:48] 2025-06-04 08:53:49,658 | INFO     | sufficient remaining disk space (496655925248 B)
[2025-06-04 11:02:48] 2025-06-04 08:53:49,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | INFO     | update_server=False
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | INFO     | aborting loop
[2025-06-04 11:02:48] 2025-06-04 08:53:49,659 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:02:48] 2025-06-04 08:53:49,660 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:02:48] 2025-06-04 08:53:49,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:02:48] 2025-06-04 08:53:49,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:02:48] 2025-06-04 08:53:49,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:02:48] 2025-06-04 08:53:50,434 | INFO     | all data control threads have been joined
[2025-06-04 11:02:48] 2025-06-04 08:53:50,665 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:50,665 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:50,730 | INFO     | all job control threads have been joined
[2025-06-04 11:02:48] 2025-06-04 08:53:50,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:02:48] 2025-06-04 08:53:50,919 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,073 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,117 | INFO     | all payload control threads have been joined
[2025-06-04 11:02:48] 2025-06-04 08:53:51,441 | INFO     | [data] control thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,574 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:02:48] 2025-06-04 08:53:51,670 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,737 | INFO     | [job] control thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,847 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,850 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,945 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,987 | INFO     | [job] validate thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:51,993 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:52,096 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:52,123 | INFO     | [payload] control thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:55,617 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:02:48] 2025-06-04 08:53:56,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401907771200)>', '<ExcThread(monitor, started 140401314875136)>']
[2025-06-04 11:02:48] 2025-06-04 08:53:56,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:02:48] 2025-06-04 08:53:56,701 | INFO     | [monitor] control thread has ended
[2025-06-04 11:02:48] 2025-06-04 08:54:01,541 | INFO     | all workflow threads have been joined
[2025-06-04 11:02:48] 2025-06-04 08:54:01,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:02:48] 2025-06-04 08:54:01,542 | INFO     | traces error code: 0
[2025-06-04 11:02:48] 2025-06-04 08:54:01,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:02:48] 2025-06-04 08:54:01,958 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:02:48] 2025-06-04 08:54:02,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:02:48] 2025-06-04 08:54:02,164 [wrapper] pilotpid: 17853
[2025-06-04 11:02:48] 2025-06-04 08:54:02,237 [wrapper] Pilot exit status: 0
[2025-06-04 11:02:48] 2025-06-04 08:54:02,675 [wrapper] pandaids: 6677919118
[2025-06-04 11:02:48] 2025-06-04 08:54:03,141 [wrapper] cleanup supervisor_pilot  2190 17854
[2025-06-04 11:02:48] 2025-06-04 08:54:03,199 [wrapper] Test setup, not cleaning
[2025-06-04 11:02:48] 2025-06-04 08:54:03,264 [wrapper] apfmon messages muted
[2025-06-04 11:02:48] 2025-06-04 08:54:03,334 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:02:48] 2025-06-04 08:54:03,403 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:02:48]  *** Error codes and diagnostics ***
[2025-06-04 11:02:48]     "exeErrorCode": 0,
[2025-06-04 11:02:48]     "exeErrorDiag": "",
[2025-06-04 11:02:48]     "pilotErrorCode": 0,
[2025-06-04 11:02:48]     "pilotErrorDiag": "",
[2025-06-04 11:02:48]  *** Listing of results directory ***
[2025-06-04 11:02:48] total 385112
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 11:02:48] -rwx------. 1 boinc boinc     37140 Jun  3 20:00 runpilot2-wrapper.sh
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:00 queuedata.json
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:02:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:56 run_atlas
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:56 job.xml
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc 213058716 Jun  4 06:56 EVNT.45006593._001662.pool.root.1
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:56 init_data.xml
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:56 start_atlas.sh
[2025-06-04 11:02:48] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:56 shared
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc    508876 Jun  4 06:56 input.tar.gz
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:56 boinc_lockfile
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc      2526 Jun  4 06:57 pandaJob.out
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc    986745 Jun  4 07:00 agis_schedconf.cvmfs.json
[2025-06-04 11:02:48] drwx------. 4 boinc boinc      4096 Jun  4 07:00 pilot3
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc 174333534 Jun  4 10:51 HITS.45006595._041504.pool.root.1
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:51 boinc_task_state.xml
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc      1015 Jun  4 10:51 memory_monitor_summary.json
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc   1603667 Jun  4 10:52 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc    377674 Jun  4 10:52 log.45006595._041504.job.log.tgz.1
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc        95 Jun  4 10:53 pilot_heartbeat.json
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc      7693 Jun  4 10:53 heartbeat.json
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc      4539 Jun  4 10:54 pilotlog.txt
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc   1194149 Jun  4 10:54 log.45006595._041504.job.log.1
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc       357 Jun  4 10:54 output.list
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:54 runtime_log
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc   1587200 Jun  4 10:54 result.tar.gz
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc      8659 Jun  4 10:54 runtime_log.err
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc       657 Jun  4 10:54 i0KLDmH7kg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmiWZKDmaT6ahm.diag
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:02 boinc_mmap_file
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:02 wrapper_checkpoint.txt
[2025-06-04 11:02:48] -rw-r--r--. 1 boinc boinc     20501 Jun  4 11:02 stderr.txt
[2025-06-04 11:02:48] HITS file was successfully produced:
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc 174333534 Jun  4 10:51 shared/HITS.pool.root.1
[2025-06-04 11:02:48]  *** Contents of shared directory: ***
[2025-06-04 11:02:48] total 380384
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc 213058716 Jun  4 06:56 ATLAS.root_0
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:56 start_atlas.sh
[2025-06-04 11:02:48] -rw-r--r--. 2 boinc boinc    508876 Jun  4 06:56 input.tar.gz
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc 174333534 Jun  4 10:51 HITS.pool.root.1
[2025-06-04 11:02:48] -rw-------. 1 boinc boinc   1587200 Jun  4 10:54 result.tar.gz
11:02:50 (12619): run_atlas exited; CPU time 50040.449619
11:02:50 (12619): called boinc_finish(0)

</stderr_txt>
]]>

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