Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:16:54 (1882077): wrapper (7.7.26015): starting
17:16:54 (1882077): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 17:16:54] Arguments: --nthreads 8
[2025-06-03 17:16:54] Threads: 8
[2025-06-03 17:16:54] Checking for CVMFS
[2025-06-03 17:16:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 17:16:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 17:16:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 17:16:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 17:16:54] 2.12.6.0 10346 419 68888 146756 1 186 28735052 32935937 9958 16776704 0 3973269 99.999 152141 40668 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 17:16:54] CVMFS is ok
[2025-06-03 17:16:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 17:16:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 17:16:54] Further information can be found at the LHC@home message board.
[2025-06-03 17:16:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 17:16:54] Checking for apptainer binary...
[2025-06-03 17:16:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 17:16:54] Running /usr/bin/apptainer --version
[2025-06-03 17:16:54] apptainer version 1.4.1-1.el9
[2025-06-03 17:16:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 17:16:54] c6-8-25-4.aglt2.org
[2025-06-03 17:16:54] apptainer works
[2025-06-03 17:16:54] Set ATHENA_PROC_NUMBER=8
[2025-06-03 17:16:54] Set ATHENA_CORE_NUMBER=8
[2025-06-03 17:16:54] Starting ATLAS job with PandaID=6666948962
[2025-06-03 17:16:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:40:02 (1882077): BOINC client no longer exists - exiting
18:40:02 (1882077): timer handler: client dead, exiting
18:46:32 (2522118): wrapper (7.7.26015): starting
18:46:32 (2522118): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 18:46:32] Arguments: --nthreads 8
[2025-06-03 18:46:32] Threads: 8
[2025-06-03 18:46:32] This job has been restarted, cleaning up previous attempt
[2025-06-03 18:46:32] Checking for CVMFS
[2025-06-03 18:46:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:46:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:46:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:46:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:46:33] 2.12.6.0 10346 509 89556 146760 0 463 29990956 32935937 7127 16776704 0 6286525 99.970 826802 37136 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 18:46:33] CVMFS is ok
[2025-06-03 18:46:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 18:46:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 18:46:33] Further information can be found at the LHC@home message board.
[2025-06-03 18:46:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:46:33] Checking for apptainer binary...
[2025-06-03 18:46:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:46:33] Running /usr/bin/apptainer --version
[2025-06-03 18:46:33] apptainer version 1.4.1-1.el9
[2025-06-03 18:46:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:46:33] c6-8-25-4.aglt2.org
[2025-06-03 18:46:33] apptainer works
[2025-06-03 18:46:33] Set ATHENA_PROC_NUMBER=8
[2025-06-03 18:46:33] Set ATHENA_CORE_NUMBER=8
[2025-06-03 18:46:33] Starting ATLAS job with PandaID=6666948962
[2025-06-03 18:46:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:08 (3696991): wrapper (7.7.26015): starting
20:00:08 (3696991): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:00:08] Arguments: --nthreads 8
[2025-06-03 20:00:08] Threads: 8
[2025-06-03 20:00:08] This job has been restarted, cleaning up previous attempt
[2025-06-03 20:00:08] Checking for CVMFS
[2025-06-03 20:00:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:00:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:00:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:00:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:00:09] 2.12.6.0 10346 582 114840 146761 2 428 30516985 32935936 9994 16776704 0 9893026 99.966 980735 32860 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 20:00:09] CVMFS is ok
[2025-06-03 20:00:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:00:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:00:09] Further information can be found at the LHC@home message board.
[2025-06-03 20:00:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:00:09] Checking for apptainer binary...
[2025-06-03 20:00:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:00:09] Running /usr/bin/apptainer --version
[2025-06-03 20:00:09] apptainer version 1.4.1-1.el9
[2025-06-03 20:00:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:00:09] c6-8-25-4.aglt2.org
[2025-06-03 20:00:09] apptainer works
[2025-06-03 20:00:09] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:00:09] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:00:09] Starting ATLAS job with PandaID=6666948962
[2025-06-03 20:00:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:28:46 (2395640): wrapper (7.7.26015): starting
21:28:46 (2395640): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:28:46] Arguments: --nthreads 8
[2025-06-03 21:28:46] Threads: 8
[2025-06-03 21:28:46] This job has been restarted, cleaning up previous attempt
[2025-06-03 21:28:46] Checking for CVMFS
[2025-06-03 21:28:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:28:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:28:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:28:46] 2.12.6.0 10346 671 112192 146763 1 235 31968148 32935936 9314 16776704 0 14379717 99.955 1357875 32741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 21:28:46] CVMFS is ok
[2025-06-03 21:28:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:28:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:28:46] Further information can be found at the LHC@home message board.
[2025-06-03 21:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:28:46] Checking for apptainer binary...
[2025-06-03 21:28:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:28:46] Running /usr/bin/apptainer --version
[2025-06-03 21:28:46] apptainer version 1.4.1-1.el9
[2025-06-03 21:28:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:28:47] c6-8-25-4.aglt2.org
[2025-06-03 21:28:47] apptainer works
[2025-06-03 21:28:47] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:28:47] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:28:47] Starting ATLAS job with PandaID=6666948962
[2025-06-03 21:28:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:41:33]  *** The last 200 lines of the pilot log: ***
[2025-06-03 22:41:33]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 22:41:33]  is_altstaged=None
[2025-06-03 22:41:33]  is_tar=False
[2025-06-03 22:41:33]  lfn=log.44871837._066523.job.log.tgz.1
[2025-06-03 22:41:33]  mtime=0
[2025-06-03 22:41:33]  protocol_id=None
[2025-06-03 22:41:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 22:41:33]  replicas=None
[2025-06-03 22:41:33]  scope=mc23_13p6TeV
[2025-06-03 22:41:33]  status=None
[2025-06-03 22:41:33]  status_code=0
[2025-06-03 22:41:33]  storage_token=
[2025-06-03 22:41:33]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6666948962/log.44871837._066523.job.log.tgz.1
[2025-06-03 22:41:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/a8/log.44871837._066523.job.log.tgz.1
[2025-06-03 22:41:33]  workdir=None
[2025-06-03 22:41:33] ]
[2025-06-03 22:41:33] 2025-06-04 02:41:07,412 | INFO     | transferring file log.44871837._066523.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6666948962/log.44871837._066523.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 22:41:33] 2025-06-04 02:41:07,412 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6666948962/log.44871837._066523.job.log.tgz.1 /tmp/boinchome/slots/3/log.44871837._066523.job
[2025-06-03 22:41:33] 2025-06-04 02:41:07,423 | INFO     | adding to output.list: log.44871837._066523.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/a8/log.44871837._066523.job.log.tg
[2025-06-03 22:41:33] 2025-06-04 02:41:07,424 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 22:41:33] 2025-06-04 02:41:07,424 | INFO     | summary of transferred files:
[2025-06-03 22:41:33] 2025-06-04 02:41:07,424 | INFO     |  -- lfn=log.44871837._066523.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 22:41:33] 2025-06-04 02:41:07,424 | INFO     | stage-out finished correctly
[2025-06-03 22:41:33] 2025-06-04 02:41:08,026 | INFO     | PID=2406455 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 22:41:33] 2025-06-04 02:41:08,027 | INFO     | .. there are 15 such processes running
[2025-06-03 22:41:33] 2025-06-04 02:41:09,456 | INFO     | monitor loop #323: job 0:6666948962 is in state 'finished'
[2025-06-03 22:41:33] 2025-06-04 02:41:09,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:41:33] 2025-06-04 02:41:10,160 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 22:41:33] 2025-06-04 02:41:11,959 | INFO     | monitor loop #324: job 0:6666948962 is in state 'finished'
[2025-06-03 22:41:33] 2025-06-04 02:41:11,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:41:33] 2025-06-04 02:41:12,157 | INFO     | job 6666948962 has state=finished
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | preparing for final server update for job 6666948962 in state='finished'
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | this job has now completed (state=finished)
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | log transfer has been attempted: DONE
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | job 6666948962 has finished - writing final server update
[2025-06-03 22:41:33] 2025-06-04 02:41:12,158 | INFO     | total number of processed events: 400 (read)
[2025-06-03 22:41:33] 2025-06-04 02:41:12,175 | INFO     | executing command: lscpu
[2025-06-03 22:41:33] 2025-06-04 02:41:12,236 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 22:41:33] 2025-06-04 02:41:14,324 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 22:41:33] 2025-06-04 02:41:14,324 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6666948962/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:41:33] 2025-06-04 02:41:14,325 | INFO     | extracted standard info from prmon json
[2025-06-03 22:41:33] 2025-06-04 02:41:14,325 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 22:41:33] 2025-06-04 02:41:14,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 22:41:33] 2025-06-04 02:41:14,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 22:41:33] 2025-06-04 02:41:14,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 22:41:33] 2025-06-04 02:41:14,326 | INFO     | fitting pss+swap vs Time
[2025-06-03 22:41:33] 2025-06-04 02:41:14,326 | INFO     | sum of square deviations: 81266640.0
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | sum of deviations: -1399280189.5
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | mean x: 1749002782.5
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | mean y: 2236859.765625
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | -- intersect: 30117237860.577606
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | intersect: 30117237860.577606
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | chi2: 0.15325932126153016
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | -- intersect: 30117237860.577606
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | current memory leak: -17.22 B/s (using 64 data points, chi2=0.15)
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | ..............................
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . Timing measurements:
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . get job = 0 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . initial setup = 4 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . payload setup = 3 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . stage-in = 0 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,327 | INFO     | . payload execution = 4309 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,328 | INFO     | . stage-out = 0 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,328 | INFO     | . log creation = 0 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,328 | INFO     | ..............................
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | 
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | job summary report
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | --------------------------------------------------
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | PanDA job id: 6666948962
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | task id: 44871837
[2025-06-03 22:41:33] 2025-06-04 02:41:14,373 | INFO     | errors: (none)
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | pilot state: finished 
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | transexitcode: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | exeerrorcode: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | exeerrordiag: 
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | exitcode: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | exitmsg: OK
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | cpuconsumptiontime: 30820 s
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | nevents: 400
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | neventsw: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | pid: 2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | pgrp: 2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | corecount: 8
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | event service: False
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | sizes: {0: 2405234, 2: 2405440, 10: 2405468, 4317: 2431384, 4318: 2440449, 4320: 2440505, 4324: 2440803}
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | --------------------------------------------------
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | 
[2025-06-03 22:41:33] 2025-06-04 02:41:14,374 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | job 6666948962 has completed (purged errors)
[2025-06-03 22:41:33] 2025-06-04 02:41:14,386 | INFO     | overall cleanup function is called
[2025-06-03 22:41:33] 2025-06-04 02:41:15,393 | INFO     | --- collectZombieJob: --- 10, [2438946]
[2025-06-03 22:41:33] 2025-06-04 02:41:15,393 | INFO     | zombie collector waiting for pid 2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:15,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 22:41:33] 2025-06-04 02:41:15,393 | INFO     | collected zombie processes
[2025-06-03 22:41:33] 2025-06-04 02:41:15,393 | INFO     | will attempt to kill all subprocesses of pid=2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:15,558 | INFO     | process IDs to be killed: [2438946] (in reverse order)
[2025-06-03 22:41:33] 2025-06-04 02:41:15,611 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 22:41:33] 2025-06-04 02:41:15,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 22:41:33] 2025-06-04 02:41:15,618 | INFO     | did not find any defunct processes belonging to 2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:15,623 | INFO     | did not find any defunct processes belonging to 2438946
[2025-06-03 22:41:33] 2025-06-04 02:41:15,623 | INFO     | ready for new job
[2025-06-03 22:41:33] 2025-06-04 02:41:15,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 22:41:33] 2025-06-04 02:41:15,624 | INFO     | **************************************
[2025-06-03 22:41:33] 2025-06-04 02:41:15,624 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 22:41:33] 2025-06-04 02:41:15,624 | INFO     | **************************************
[2025-06-03 22:41:33] 2025-06-04 02:41:15,624 | INFO     | 
[2025-06-03 22:41:33] 2025-06-04 02:41:15,639 | INFO     | architecture information:
[2025-06-03 22:41:33] 2025-06-04 02:41:15,639 | INFO     | executing command: cat /etc/os-release
[2025-06-03 22:41:33] 2025-06-04 02:41:15,647 | INFO     | cat /etc/os-release:
[2025-06-03 22:41:33] NAME="CentOS Linux"
[2025-06-03 22:41:33] VERSION="7 (Core)"
[2025-06-03 22:41:33] ID="centos"
[2025-06-03 22:41:33] ID_LIKE="rhel fedora"
[2025-06-03 22:41:33] VERSION_ID="7"
[2025-06-03 22:41:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 22:41:33] ANSI_COLOR="0;31"
[2025-06-03 22:41:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 22:41:33] HOME_URL="https://www.centos.org/"
[2025-06-03 22:41:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 22:41:33] 
[2025-06-03 22:41:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 22:41:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 22:41:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 22:41:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 22:41:33] 
[2025-06-03 22:41:33] 2025-06-04 02:41:15,647 | INFO     | **************************************
[2025-06-03 22:41:33] 2025-06-04 02:41:16,150 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 22:41:33] 2025-06-04 02:41:16,159 | INFO     | sufficient remaining disk space (75643224064 B)
[2025-06-03 22:41:33] 2025-06-04 02:41:16,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 22:41:33] 2025-06-04 02:41:16,159 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 22:41:33] 2025-06-04 02:41:16,159 | INFO     | update_server=False
[2025-06-03 22:41:33] 2025-06-04 02:41:16,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 22:41:33] 2025-06-04 02:41:16,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:41:33] 2025-06-04 02:41:16,160 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:41:33] 2025-06-04 02:41:16,160 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 22:41:33] 2025-06-04 02:41:16,160 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 22:41:33] 2025-06-04 02:41:16,160 | INFO     | aborting loop
[2025-06-03 22:41:33] 2025-06-04 02:41:16,161 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 22:41:33] 2025-06-04 02:41:16,161 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 22:41:33] 2025-06-04 02:41:16,161 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 22:41:33] 2025-06-04 02:41:16,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 22:41:33] 2025-06-04 02:41:16,346 | INFO     | all job control threads have been joined
[2025-06-03 22:41:33] 2025-06-04 02:41:16,804 | INFO     | all payload control threads have been joined
[2025-06-03 22:41:33] 2025-06-04 02:41:17,165 | INFO     | [job] retrieve thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,165 | INFO     | [job] queue monitor thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,166 | INFO     | [job] job monitor thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,249 | INFO     | all data control threads have been joined
[2025-06-03 22:41:33] 2025-06-04 02:41:17,351 | INFO     | [job] control thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,802 | INFO     | [data] copytool_in thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,810 | INFO     | [payload] control thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,976 | INFO     | [payload] failed_post thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:17,986 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,166 | INFO     | [data] copytool_out thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,254 | INFO     | [data] control thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,389 | INFO     | [job] validate thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,509 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,584 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:18,731 | INFO     | [payload] validate_post thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:20,216 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:26,412 | INFO     | job.realtimelogging is not enabled
[2025-06-03 22:41:33] 2025-06-04 02:41:27,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 22:41:33] 2025-06-04 02:41:28,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614497150784)>', '<ExcThread(monitor, started 140613731215104)>']
[2025-06-03 22:41:33] 2025-06-04 02:41:28,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 22:41:33] 2025-06-04 02:41:28,221 | INFO     | [monitor] control thread has ended
[2025-06-03 22:41:33] 2025-06-04 02:41:33,208 | INFO     | all workflow threads have been joined
[2025-06-03 22:41:33] 2025-06-04 02:41:33,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 22:41:33] 2025-06-04 02:41:33,208 | INFO     | traces error code: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:33,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 22:41:33] 2025-06-04 02:41:33,296 [wrapper] ==== pilot stdout END ====
[2025-06-03 22:41:33] 2025-06-04 02:41:33,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 22:41:33] 2025-06-04 02:41:33,298 [wrapper] pilotpid: 2406455
[2025-06-03 22:41:33] 2025-06-04 02:41:33,300 [wrapper] Pilot exit status: 0
[2025-06-03 22:41:33] 2025-06-04 02:41:33,305 [wrapper] pandaids: 6666948962 6666948962 6666948962 6666948962
[2025-06-03 22:41:33] 2025-06-04 02:41:33,342 [wrapper] cleanup supervisor_pilot 2601249 2406456
[2025-06-03 22:41:33] 2025-06-04 02:41:33,344 [wrapper] Test setup, not cleaning
[2025-06-03 22:41:33] 2025-06-04 02:41:33,345 [wrapper] apfmon messages muted
[2025-06-03 22:41:33] 2025-06-04 02:41:33,347 [wrapper] ==== wrapper stdout END ====
[2025-06-03 22:41:33] 2025-06-04 02:41:33,348 [wrapper] ==== wrapper stderr END ====
[2025-06-03 22:41:33]  *** Error codes and diagnostics ***
[2025-06-03 22:41:33]     "exeErrorCode": 0,
[2025-06-03 22:41:33]     "exeErrorDiag": "",
[2025-06-03 22:41:33]     "pilotErrorCode": 0,
[2025-06-03 22:41:33]     "pilotErrorDiag": "",
[2025-06-03 22:41:33]  *** Listing of results directory ***
[2025-06-03 22:41:33] total 634184
[2025-06-03 22:41:33] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas    495897 May 27 07:17 pilot3.tar.gz
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas      5111 May 27 07:20 queuedata.json
[2025-06-03 22:41:33] -rwx------. 1 boincer umatlas     37140 May 27 07:20 runpilot2-wrapper.sh
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas       100 Jun  3 17:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 22:41:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 17:16 run_atlas
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas       105 Jun  3 17:16 job.xml
[2025-06-03 22:41:33] -rw-r--r--. 3 boincer umatlas 223829574 Jun  3 17:16 EVNT.44871834._002619.pool.root.1
[2025-06-03 22:41:33] -rw-r--r--. 3 boincer umatlas 223829574 Jun  3 17:16 ATLAS.root_0
[2025-06-03 22:41:33] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 17:16 start_atlas.sh
[2025-06-03 22:41:33] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 17:16 shared
[2025-06-03 22:41:33] -rw-r--r--. 2 boincer umatlas    508869 Jun  3 17:16 input.tar.gz
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas         0 Jun  3 17:16 boinc_lockfile
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas      2559 Jun  3 21:28 pandaJob.out
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas    986077 Jun  3 21:28 agis_schedconf.cvmfs.json
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas   1603667 Jun  3 21:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas      6859 Jun  3 22:39 init_data.xml
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas        96 Jun  3 22:40 pilot_heartbeat.json
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas 196447326 Jun  3 22:40 HITS.44871837._066523.pool.root.1
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas       531 Jun  3 22:40 boinc_task_state.xml
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas      1032 Jun  3 22:41 memory_monitor_summary.json
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas    299839 Jun  3 22:41 log.44871837._066523.job.log.tgz.1
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas      7716 Jun  3 22:41 heartbeat.json
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 22:41 boinc_mmap_file
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas        29 Jun  3 22:41 wrapper_checkpoint.txt
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas      4548 Jun  3 22:41 pilotlog.txt
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas    430842 Jun  3 22:41 log.44871837._066523.job.log.1
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas       357 Jun  3 22:41 output.list
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas       620 Jun  3 22:41 runtime_log
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas    747520 Jun  3 22:41 result.tar.gz
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas      8749 Jun  3 22:41 runtime_log.err
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas      1027 Jun  3 22:41 G9oKDmnX7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrFZKDm0BxaOm.diag
[2025-06-03 22:41:33] -rw-r--r--. 1 boincer umatlas     28012 Jun  3 22:41 stderr.txt
[2025-06-03 22:41:33] HITS file was successfully produced:
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas 196447326 Jun  3 22:40 shared/HITS.pool.root.1
[2025-06-03 22:41:33]  *** Contents of shared directory: ***
[2025-06-03 22:41:33] total 411680
[2025-06-03 22:41:33] -rw-r--r--. 3 boincer umatlas 223829574 Jun  3 17:16 ATLAS.root_0
[2025-06-03 22:41:33] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 17:16 start_atlas.sh
[2025-06-03 22:41:33] -rw-r--r--. 2 boincer umatlas    508869 Jun  3 17:16 input.tar.gz
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas 196447326 Jun  3 22:40 HITS.pool.root.1
[2025-06-03 22:41:33] -rw-------. 1 boincer umatlas    747520 Jun  3 22:41 result.tar.gz
22:41:34 (2395640): run_atlas exited; CPU time 30954.063572
22:41:34 (2395640): called boinc_finish(0)

</stderr_txt>
]]>

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