Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:41:00 (20820): wrapper (7.7.26015): starting
09:41:00 (20820): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:41:00] Arguments: --nthreads 8
[2025-06-04 09:41:00] Threads: 8
[2025-06-04 09:41:00] Checking for CVMFS
[2025-06-04 09:41:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:41:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:41:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:41:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:41:02] 2.11.2.0 14465 32917 94704 146772 1 16 16471654 25165824 4297 130560 0 17804829 99.799 20226588 2031 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:41:02] CVMFS is ok
[2025-06-04 09:41:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:41:02] Checking for apptainer binary...
[2025-06-04 09:41:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:41:02] Running /usr/bin/apptainer --version
[2025-06-04 09:41:02] apptainer version 1.3.2-1.el7
[2025-06-04 09:41:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:11:37] cg-vwn249.simple-grid.lan
[2025-06-04 10:11:37] apptainer works
[2025-06-04 10:11:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:11:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:11:37] Starting ATLAS job with PandaID=6677635307
[2025-06-04 10:11:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:11:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:11:12] 2025-06-04 12:10:38,123 | INFO     | extracted standard info from prmon json
[2025-06-04 14:11:12] 2025-06-04 12:10:38,127 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:11:12] 2025-06-04 12:10:38,127 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:11:12] 2025-06-04 12:10:38,128 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:11:12] 2025-06-04 12:10:38,128 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:11:12] 2025-06-04 12:10:38,133 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:11:12] 2025-06-04 12:10:38,134 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,136 | INFO     | sum of deviations: 49697132215.50001
[2025-06-04 14:11:12] 2025-06-04 12:10:38,136 | INFO     | mean x: 1749032153.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,136 | INFO     | mean y: 2454746.2477477477
[2025-06-04 14:11:12] 2025-06-04 12:10:38,136 | INFO     | -- intersect: -25618811333.370735
[2025-06-04 14:11:12] 2025-06-04 12:10:38,136 | INFO     | intersect: -25618811333.370735
[2025-06-04 14:11:12] 2025-06-04 12:10:38,137 | INFO     | chi2: 7.442221024821274
[2025-06-04 14:11:12] 2025-06-04 12:10:38,137 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,139 | INFO     | sum of deviations: 63418245082.000015
[2025-06-04 14:11:12] 2025-06-04 12:10:38,139 | INFO     | mean x: 1749032001.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,139 | INFO     | mean y: 2463900.543778802
[2025-06-04 14:11:12] 2025-06-04 12:10:38,139 | INFO     | -- intersect: -35005235646.21265
[2025-06-04 14:11:12] 2025-06-04 12:10:38,139 | INFO     | intersect: -35005235646.21265
[2025-06-04 14:11:12] 2025-06-04 12:10:38,140 | INFO     | chi2: 6.741572386315687
[2025-06-04 14:11:12] 2025-06-04 12:10:38,140 | INFO     | current chi2=6.741572386315687 (change=9.414509944931572 %)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,140 | INFO     | right removable region: 216
[2025-06-04 14:11:12] 2025-06-04 12:10:38,141 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,149 | INFO     | sum of deviations: -28769884205.999992
[2025-06-04 14:11:12] 2025-06-04 12:10:38,149 | INFO     | mean x: 1749032306.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,149 | INFO     | mean y: 2508102.8479262674
[2025-06-04 14:11:12] 2025-06-04 12:10:38,149 | INFO     | -- intersect: 15883862697.38771
[2025-06-04 14:11:12] 2025-06-04 12:10:38,149 | INFO     | intersect: 15883862697.38771
[2025-06-04 14:11:12] 2025-06-04 12:10:38,150 | INFO     | chi2: 2.3780889294062657
[2025-06-04 14:11:12] 2025-06-04 12:10:38,150 | INFO     | current chi2=2.3780889294062657 (change=68.0459781901818 %)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,150 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,152 | INFO     | sum of deviations: -65274403010.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,152 | INFO     | mean x: 1749032458.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,152 | INFO     | mean y: 2533937.6273584906
[2025-06-04 14:11:12] 2025-06-04 12:10:38,152 | INFO     | -- intersect: 38644964398.67079
[2025-06-04 14:11:12] 2025-06-04 12:10:38,153 | INFO     | intersect: 38644964398.67079
[2025-06-04 14:11:12] 2025-06-04 12:10:38,153 | INFO     | chi2: 1.021448599996566
[2025-06-04 14:11:12] 2025-06-04 12:10:38,153 | INFO     | current chi2=1.021448599996566 (change=57.04750199347719 %)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,154 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,155 | INFO     | sum of deviations: -66062502057.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,155 | INFO     | mean x: 1749032611.0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,155 | INFO     | mean y: 2534492.45410628
[2025-06-04 14:11:12] 2025-06-04 12:10:38,156 | INFO     | -- intersect: 42014558061.73842
[2025-06-04 14:11:12] 2025-06-04 12:10:38,156 | INFO     | intersect: 42014558061.73842
[2025-06-04 14:11:12] 2025-06-04 12:10:38,156 | INFO     | chi2: 0.9962917439617579
[2025-06-04 14:11:12] 2025-06-04 12:10:38,156 | INFO     | current chi2=0.9962917439617579 (change=2.4628606897001544 %)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,156 | INFO     | left removable region: 30
[2025-06-04 14:11:12] 2025-06-04 12:10:38,157 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,158 | INFO     | sum of deviations: -32527445867.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,158 | INFO     | mean x: 1749032885.5
[2025-06-04 14:11:12] 2025-06-04 12:10:38,159 | INFO     | mean y: 2530754.1129032257
[2025-06-04 14:11:12] 2025-06-04 12:10:38,159 | INFO     | -- intersect: 28515551814.442013
[2025-06-04 14:11:12] 2025-06-04 12:10:38,159 | INFO     | intersect: 28515551814.442013
[2025-06-04 14:11:12] 2025-06-04 12:10:38,159 | INFO     | chi2: 0.17715586212230283
[2025-06-04 14:11:12] 2025-06-04 12:10:38,159 | INFO     | -- intersect: 28515551814.442013
[2025-06-04 14:11:12] 2025-06-04 12:10:38,160 | INFO     | current memory leak: -16.30 B/s (using 186 data points, chi2=0.18)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,160 | INFO     | ..............................
[2025-06-04 14:11:12] 2025-06-04 12:10:38,161 | INFO     | . Timing measurements:
[2025-06-04 14:11:12] 2025-06-04 12:10:38,169 | INFO     | . get job = 0 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,169 | INFO     | . initial setup = 10 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,169 | INFO     | . payload setup = 182 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,169 | INFO     | . stage-in = 0 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,169 | INFO     | . payload execution = 13678 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,170 | INFO     | . stage-out = 4 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,170 | INFO     | . log creation = 1 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,170 | INFO     | ..............................
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | 
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | job summary report
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | --------------------------------------------------
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | PanDA job id: 6677635307
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | task id: 45006595
[2025-06-04 14:11:12] 2025-06-04 12:10:38,450 | INFO     | errors: (none)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | pilot state: finished 
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | transexitcode: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | exeerrorcode: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | exeerrordiag: 
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | exitcode: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | exitmsg: OK
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | cpuconsumptiontime: 50633 s
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | nevents: 400
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | neventsw: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:38,451 | INFO     | pid: 21725
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | pgrp: 21725
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | corecount: 8
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | event service: False
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | sizes: {0: 2404356, 1: 2405042, 2: 2405241, 13: 2405241, 23: 2405297, 34: 2405325, 45: 2405481, 56: 2405509, 66: 2405537, 77: 2405565, 87: 2405827, 88: 2406135, 13
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | --------------------------------------------------
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | 
[2025-06-04 14:11:12] 2025-06-04 12:10:38,452 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-06-04 14:11:12] 2025-06-04 12:10:38,878 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,879 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,881 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,881 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:11:12] 2025-06-04 12:10:38,881 | INFO     | job 6677635307 has completed (purged errors)
[2025-06-04 14:11:12] 2025-06-04 12:10:38,881 | INFO     | overall cleanup function is called
[2025-06-04 14:11:12] 2025-06-04 12:10:39,895 | INFO     | --- collectZombieJob: --- 10, [21725]
[2025-06-04 14:11:12] 2025-06-04 12:10:39,895 | INFO     | zombie collector waiting for pid 21725
[2025-06-04 14:11:12] 2025-06-04 12:10:39,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:11:12] 2025-06-04 12:10:39,895 | INFO     | collected zombie processes
[2025-06-04 14:11:12] 2025-06-04 12:10:39,895 | INFO     | will attempt to kill all subprocesses of pid=21725
[2025-06-04 14:11:12] 2025-06-04 12:10:40,046 | INFO     | process IDs to be killed: [21725] (in reverse order)
[2025-06-04 14:11:12] 2025-06-04 12:10:40,644 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:11:12] 2025-06-04 12:10:40,644 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:11:12] 2025-06-04 12:10:40,648 | INFO     | did not find any defunct processes belonging to 21725
[2025-06-04 14:11:12] 2025-06-04 12:10:40,651 | INFO     | did not find any defunct processes belonging to 21725
[2025-06-04 14:11:12] 2025-06-04 12:10:40,651 | INFO     | ready for new job
[2025-06-04 14:11:12] 2025-06-04 12:10:40,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:11:12] 2025-06-04 12:10:40,653 | INFO     | **************************************
[2025-06-04 14:11:12] 2025-06-04 12:10:40,653 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:11:12] 2025-06-04 12:10:40,654 | INFO     | **************************************
[2025-06-04 14:11:12] 2025-06-04 12:10:40,654 | INFO     | 
[2025-06-04 14:11:12] 2025-06-04 12:10:40,654 | INFO     | pilot is running in a VM
[2025-06-04 14:11:12] 2025-06-04 12:10:40,654 | INFO     | architecture information:
[2025-06-04 14:11:12] 2025-06-04 12:10:40,662 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:11:12] 2025-06-04 12:10:40,801 | INFO     | cat /etc/os-release:
[2025-06-04 14:11:12] NAME="CentOS Linux"
[2025-06-04 14:11:12] VERSION="7 (Core)"
[2025-06-04 14:11:12] ID="centos"
[2025-06-04 14:11:12] ID_LIKE="rhel fedora"
[2025-06-04 14:11:12] VERSION_ID="7"
[2025-06-04 14:11:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:11:12] ANSI_COLOR="0;31"
[2025-06-04 14:11:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:11:12] HOME_URL="https://www.centos.org/"
[2025-06-04 14:11:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:11:12] 
[2025-06-04 14:11:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:11:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:11:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:11:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:11:12] 
[2025-06-04 14:11:12] 2025-06-04 12:10:40,802 | INFO     | **************************************
[2025-06-04 14:11:12] 2025-06-04 12:10:41,305 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-06-04 14:11:12] 2025-06-04 12:10:41,590 | INFO     | sufficient remaining disk space (496476618752 B)
[2025-06-04 14:11:12] 2025-06-04 12:10:41,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:11:12] 2025-06-04 12:10:41,591 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:11:12] 2025-06-04 12:10:41,591 | INFO     | update_server=False
[2025-06-04 14:11:12] 2025-06-04 12:10:41,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:11:12] 2025-06-04 12:10:41,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:11:12] 2025-06-04 12:10:41,592 | INFO     | aborting loop
[2025-06-04 14:11:12] 2025-06-04 12:10:41,598 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 14:11:12] 2025-06-04 12:10:41,598 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:11:12] 2025-06-04 12:10:41,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:11:12] 2025-06-04 12:10:41,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:11:12] 2025-06-04 12:10:41,616 | INFO     | all payload control threads have been joined
[2025-06-04 14:11:12] 2025-06-04 12:10:41,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:11:12] 2025-06-04 12:10:42,139 | INFO     | all job control threads have been joined
[2025-06-04 14:11:12] 2025-06-04 12:10:42,250 | INFO     | all data control threads have been joined
[2025-06-04 14:11:12] 2025-06-04 12:10:42,598 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:42,599 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:42,622 | INFO     | [payload] control thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:42,753 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:42,967 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,098 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,132 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,145 | INFO     | [job] control thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,256 | INFO     | [data] control thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:11:12] 2025-06-04 12:10:43,462 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,541 | INFO     | [job] validate thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:11:12] 2025-06-04 12:10:43,716 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:43,793 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:44,335 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:47,696 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:11:12] 2025-06-04 12:10:48,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837325117248)>', '<ExcThread(monitor, started 139836610569984)>']
[2025-06-04 14:11:12] 2025-06-04 12:10:49,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:11:12] 2025-06-04 12:10:49,646 | INFO     | [monitor] control thread has ended
[2025-06-04 14:11:12] 2025-06-04 12:10:53,917 | INFO     | all workflow threads have been joined
[2025-06-04 14:11:12] 2025-06-04 12:10:53,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:11:12] 2025-06-04 12:10:53,917 | INFO     | traces error code: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:53,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:11:12] 2025-06-04 12:10:54,253 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:11:12] 2025-06-04 12:10:54,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:11:12] 2025-06-04 12:10:54,432 [wrapper] pilotpid: 11084
[2025-06-04 14:11:12] 2025-06-04 12:10:54,565 [wrapper] Pilot exit status: 0
[2025-06-04 14:11:12] 2025-06-04 12:10:54,830 [wrapper] pandaids: 6677635307
[2025-06-04 14:11:12] 2025-06-04 12:10:55,613 [wrapper] cleanup supervisor_pilot 31966 11085
[2025-06-04 14:11:12] 2025-06-04 12:10:55,702 [wrapper] Test setup, not cleaning
[2025-06-04 14:11:12] 2025-06-04 12:10:55,767 [wrapper] apfmon messages muted
[2025-06-04 14:11:12] 2025-06-04 12:10:55,876 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:11:12] 2025-06-04 12:10:56,002 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:11:12]  *** Error codes and diagnostics ***
[2025-06-04 14:11:12]     "exeErrorCode": 0,
[2025-06-04 14:11:12]     "exeErrorDiag": "",
[2025-06-04 14:11:12]     "pilotErrorCode": 0,
[2025-06-04 14:11:12]     "pilotErrorDiag": "",
[2025-06-04 14:11:12]  *** Listing of results directory ***
[2025-06-04 14:11:12] total 393324
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:59 pilot3.tar.gz
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc      5111 Jun  3 15:31 queuedata.json
[2025-06-04 14:11:12] -rwx------. 1 boinc boinc     37140 Jun  3 15:31 runpilot2-wrapper.sh
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:11:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:41 run_atlas
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:41 job.xml
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc 216883932 Jun  4 09:41 EVNT.45006593._001365.pool.root.1
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc      6393 Jun  4 09:41 init_data.xml
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:41 start_atlas.sh
[2025-06-04 14:11:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:41 shared
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc    508880 Jun  4 09:41 input.tar.gz
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:41 boinc_lockfile
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc      2525 Jun  4 10:11 pandaJob.out
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc    986745 Jun  4 10:15 agis_schedconf.cvmfs.json
[2025-06-04 14:11:12] drwx------. 4 boinc boinc      4096 Jun  4 10:15 pilot3
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc 178861580 Jun  4 14:07 HITS.45006595._033953.pool.root.1
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc       531 Jun  4 14:08 boinc_task_state.xml
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc      1013 Jun  4 14:09 memory_monitor_summary.json
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc   1598969 Jun  4 14:09 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc    398389 Jun  4 14:09 log.45006595._033953.job.log.tgz.1
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc        95 Jun  4 14:10 pilot_heartbeat.json
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc      7689 Jun  4 14:10 heartbeat.json
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc      4540 Jun  4 14:10 pilotlog.txt
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc   1202585 Jun  4 14:10 log.45006595._033953.job.log.1
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc       357 Jun  4 14:10 output.list
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc       620 Jun  4 14:10 runtime_log
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc   1617920 Jun  4 14:10 result.tar.gz
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc      8673 Jun  4 14:10 runtime_log.err
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc       657 Jun  4 14:10 1bFKDmNvgg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbMkKDm4RHjWn.diag
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc      8192 Jun  4 14:11 boinc_mmap_file
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc        28 Jun  4 14:11 wrapper_checkpoint.txt
[2025-06-04 14:11:12] -rw-r--r--. 1 boinc boinc     20510 Jun  4 14:11 stderr.txt
[2025-06-04 14:11:12] HITS file was successfully produced:
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc 178861580 Jun  4 14:07 shared/HITS.pool.root.1
[2025-06-04 14:11:12]  *** Contents of shared directory: ***
[2025-06-04 14:11:12] total 388572
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc 216883932 Jun  4 09:41 ATLAS.root_0
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:41 start_atlas.sh
[2025-06-04 14:11:12] -rw-r--r--. 2 boinc boinc    508880 Jun  4 09:41 input.tar.gz
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc 178861580 Jun  4 14:07 HITS.pool.root.1
[2025-06-04 14:11:12] -rw-------. 1 boinc boinc   1617920 Jun  4 14:10 result.tar.gz
14:11:13 (20820): run_atlas exited; CPU time 50829.552448
14:11:13 (20820): called boinc_finish(0)

</stderr_txt>
]]>

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