Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:30:33 (8023): wrapper (7.7.26015): starting
13:30:33 (8023): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:30:33] Arguments: --nthreads 8
[2025-06-04 13:30:33] Threads: 8
[2025-06-04 13:30:33] Checking for CVMFS
[2025-06-04 13:30:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:30:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:30:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:30:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:30:34] 2.11.2.0 13438 33160 100016 146778 3 201 22603497 25165824 4019 130560 0 16862175 99.792 19451468 2097 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:30:34] CVMFS is ok
[2025-06-04 13:30:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:30:34] Checking for apptainer binary...
[2025-06-04 13:30:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:30:34] Running /usr/bin/apptainer --version
[2025-06-04 13:30:35] apptainer version 1.3.2-1.el7
[2025-06-04 13:30:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:30:36] cg-vwn353.simple-grid.lan
[2025-06-04 13:30:36] apptainer works
[2025-06-04 13:30:36] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:30:36] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:30:36] Starting ATLAS job with PandaID=6677917832
[2025-06-04 13:30:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:03:47]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:03:47] 2025-06-04 15:15:31,646 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:03:47] 2025-06-04 15:15:31,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:03:47] 2025-06-04 15:15:31,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:03:47] 2025-06-04 15:15:31,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:03:47] 2025-06-04 15:15:31,652 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:03:47] 2025-06-04 15:15:31,653 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,654 | INFO     | sum of deviations: 28792488000.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,655 | INFO     | mean x: 1749043384.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,661 | INFO     | mean y: 2457149.812785388
[2025-06-04 18:03:47] 2025-06-04 15:15:31,661 | INFO     | -- intersect: -15459984127.699745
[2025-06-04 18:03:47] 2025-06-04 15:15:31,661 | INFO     | intersect: -15459984127.699745
[2025-06-04 18:03:47] 2025-06-04 15:15:31,662 | INFO     | chi2: 2.5127523134714194
[2025-06-04 18:03:47] 2025-06-04 15:15:31,662 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,664 | INFO     | sum of deviations: 42397974817.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,664 | INFO     | mean x: 1749043231.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,665 | INFO     | mean y: 2466480.051401869
[2025-06-04 18:03:47] 2025-06-04 15:15:31,665 | INFO     | -- intersect: -24400093901.339832
[2025-06-04 18:03:47] 2025-06-04 15:15:31,665 | INFO     | intersect: -24400093901.339832
[2025-06-04 18:03:47] 2025-06-04 15:15:31,665 | INFO     | chi2: 1.7446975957296378
[2025-06-04 18:03:47] 2025-06-04 15:15:31,665 | INFO     | current chi2=1.7446975957296378 (change=30.566272434575858 %)
[2025-06-04 18:03:47] 2025-06-04 15:15:31,666 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,668 | INFO     | sum of deviations: 41366320522.00001
[2025-06-04 18:03:47] 2025-06-04 15:15:31,668 | INFO     | mean x: 1749043079.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,668 | INFO     | mean y: 2465723.789473684
[2025-06-04 18:03:47] 2025-06-04 15:15:31,668 | INFO     | -- intersect: -25556310714.09667
[2025-06-04 18:03:47] 2025-06-04 15:15:31,668 | INFO     | intersect: -25556310714.09667
[2025-06-04 18:03:47] 2025-06-04 15:15:31,669 | INFO     | chi2: 1.7454155705520271
[2025-06-04 18:03:47] 2025-06-04 15:15:31,669 | INFO     | current chi2=1.7454155705520271 (change=-0.0411518204728811 %)
[2025-06-04 18:03:47] 2025-06-04 15:15:31,669 | INFO     | right removable region: 208
[2025-06-04 18:03:47] 2025-06-04 15:15:31,669 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,671 | INFO     | sum of deviations: -10856135870.500002
[2025-06-04 18:03:47] 2025-06-04 15:15:31,671 | INFO     | mean x: 1749043536.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,671 | INFO     | mean y: 2484655.5560747664
[2025-06-04 18:03:47] 2025-06-04 15:15:31,672 | INFO     | -- intersect: 6250838696.648432
[2025-06-04 18:03:47] 2025-06-04 15:15:31,672 | INFO     | intersect: 6250838696.648432
[2025-06-04 18:03:47] 2025-06-04 15:15:31,672 | INFO     | chi2: 0.8181567462765422
[2025-06-04 18:03:47] 2025-06-04 15:15:31,672 | INFO     | current chi2=0.8181567462765422 (change=67.43981721197814 %)
[2025-06-04 18:03:47] 2025-06-04 15:15:31,673 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,681 | INFO     | sum of deviations: -7614169206.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,681 | INFO     | mean x: 1749043689.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,681 | INFO     | mean y: 2482239.6459330143
[2025-06-04 18:03:47] 2025-06-04 15:15:31,681 | INFO     | -- intersect: 4707007899.96153
[2025-06-04 18:03:47] 2025-06-04 15:15:31,681 | INFO     | intersect: 4707007899.96153
[2025-06-04 18:03:47] 2025-06-04 15:15:31,682 | INFO     | chi2: 0.794974555528227
[2025-06-04 18:03:47] 2025-06-04 15:15:31,682 | INFO     | current chi2=0.794974555528227 (change=2.8334656963739624 %)
[2025-06-04 18:03:47] 2025-06-04 15:15:31,682 | INFO     | left removable region: 20
[2025-06-04 18:03:47] 2025-06-04 15:15:31,683 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,684 | INFO     | sum of deviations: 2519740664.0
[2025-06-04 18:03:47] 2025-06-04 15:15:31,684 | INFO     | mean x: 1749043658.5
[2025-06-04 18:03:47] 2025-06-04 15:15:31,684 | INFO     | mean y: 2495506.510638298
[2025-06-04 18:03:47] 2025-06-04 15:15:31,684 | INFO     | -- intersect: -2136534175.235851
[2025-06-04 18:03:47] 2025-06-04 15:15:31,684 | INFO     | intersect: -2136534175.235851
[2025-06-04 18:03:47] 2025-06-04 15:15:31,685 | INFO     | chi2: 0.0007276572524289572
[2025-06-04 18:03:47] 2025-06-04 15:15:31,685 | INFO     | -- intersect: -2136534175.235851
[2025-06-04 18:03:47] 2025-06-04 15:15:31,685 | INFO     | current memory leak: 1.22 B/s (using 188 data points, chi2=0.00)
[2025-06-04 18:03:47] 2025-06-04 15:15:31,686 | INFO     | ..............................
[2025-06-04 18:03:47] 2025-06-04 15:15:31,686 | INFO     | . Timing measurements:
[2025-06-04 18:03:47] 2025-06-04 15:15:31,686 | INFO     | . get job = 0 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,686 | INFO     | . initial setup = 2 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,686 | INFO     | . payload setup = 21 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,687 | INFO     | . stage-in = 0 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,687 | INFO     | . payload execution = 13323 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,687 | INFO     | . stage-out = 5 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,687 | INFO     | . log creation = 1 s
[2025-06-04 18:03:47] 2025-06-04 15:15:31,687 | INFO     | ..............................
[2025-06-04 18:03:47] 2025-06-04 15:15:32,141 | INFO     | 
[2025-06-04 18:03:47] 2025-06-04 15:15:32,141 | INFO     | job summary report
[2025-06-04 18:03:47] 2025-06-04 15:15:32,141 | INFO     | --------------------------------------------------
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | PanDA job id: 6677917832
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | task id: 45006595
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | errors: (none)
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | pilot state: finished 
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | transexitcode: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | exeerrorcode: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | exeerrordiag: 
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | exitcode: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | exitmsg: OK
[2025-06-04 18:03:47] 2025-06-04 15:15:32,142 | INFO     | cpuconsumptiontime: 50268 s
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | nevents: 400
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | neventsw: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | pid: 24262
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | pgrp: 24262
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | corecount: 8
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | event service: False
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | sizes: {0: 2397172, 1: 2397371, 11: 2397577, 12: 2397605, 13349: 2427149, 13355: 2436092, 13357: 2436276, 13441: 2436446}
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | --------------------------------------------------
[2025-06-04 18:03:47] 2025-06-04 15:15:32,143 | INFO     | 
[2025-06-04 18:03:47] 2025-06-04 15:15:32,144 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-06-04 18:03:47] 2025-06-04 15:15:32,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:03:47] 2025-06-04 15:15:32,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:03:47] 2025-06-04 15:15:32,592 | INFO     | job 6677917832 has completed (purged errors)
[2025-06-04 18:03:47] 2025-06-04 15:15:32,592 | INFO     | overall cleanup function is called
[2025-06-04 18:03:47] 2025-06-04 15:15:33,601 | INFO     | --- collectZombieJob: --- 10, [24262]
[2025-06-04 18:03:47] 2025-06-04 15:15:33,601 | INFO     | zombie collector waiting for pid 24262
[2025-06-04 18:03:47] 2025-06-04 15:15:33,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:03:47] 2025-06-04 15:15:33,602 | INFO     | collected zombie processes
[2025-06-04 18:03:47] 2025-06-04 15:15:33,602 | INFO     | will attempt to kill all subprocesses of pid=24262
[2025-06-04 18:03:47] 2025-06-04 15:15:33,896 | INFO     | PID=15734 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 18:03:47] 2025-06-04 15:15:33,897 | INFO     | .. there are 9 such processes running
[2025-06-04 18:03:47] 2025-06-04 15:15:33,903 | INFO     | process IDs to be killed: [24262] (in reverse order)
[2025-06-04 18:03:47] 2025-06-04 15:15:34,914 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:03:47] 2025-06-04 15:15:34,914 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:03:47] 2025-06-04 15:15:34,918 | INFO     | did not find any defunct processes belonging to 24262
[2025-06-04 18:03:47] 2025-06-04 15:15:34,921 | INFO     | did not find any defunct processes belonging to 24262
[2025-06-04 18:03:47] 2025-06-04 15:15:34,921 | INFO     | ready for new job
[2025-06-04 18:03:47] 2025-06-04 15:15:34,921 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:03:47] 2025-06-04 15:15:34,923 | INFO     | **************************************
[2025-06-04 18:03:47] 2025-06-04 15:15:34,923 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:03:47] 2025-06-04 15:15:34,924 | INFO     | **************************************
[2025-06-04 18:03:47] 2025-06-04 15:15:34,924 | INFO     | 
[2025-06-04 18:03:47] 2025-06-04 15:15:34,924 | INFO     | pilot is running in a VM
[2025-06-04 18:03:47] 2025-06-04 15:15:34,924 | INFO     | architecture information:
[2025-06-04 18:03:47] 2025-06-04 15:15:34,938 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:03:47] 2025-06-04 15:15:35,163 | INFO     | cat /etc/os-release:
[2025-06-04 18:03:47] NAME="CentOS Linux"
[2025-06-04 18:03:47] VERSION="7 (Core)"
[2025-06-04 18:03:47] ID="centos"
[2025-06-04 18:03:47] ID_LIKE="rhel fedora"
[2025-06-04 18:03:47] VERSION_ID="7"
[2025-06-04 18:03:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:03:47] ANSI_COLOR="0;31"
[2025-06-04 18:03:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:03:47] HOME_URL="https://www.centos.org/"
[2025-06-04 18:03:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:03:47] 
[2025-06-04 18:03:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:03:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:03:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:03:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:03:47] 
[2025-06-04 18:03:47] 2025-06-04 15:15:35,163 | INFO     | **************************************
[2025-06-04 18:03:47] 2025-06-04 15:15:35,667 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-06-04 18:03:47] 2025-06-04 15:15:35,852 | INFO     | sufficient remaining disk space (496483958784 B)
[2025-06-04 18:03:47] 2025-06-04 15:15:35,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:03:47] 2025-06-04 15:15:35,852 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:03:47] 2025-06-04 15:15:35,852 | INFO     | update_server=False
[2025-06-04 18:03:47] 2025-06-04 15:15:35,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:03:47] 2025-06-04 15:15:35,853 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:03:47] 2025-06-04 15:15:35,853 | INFO     | aborting loop
[2025-06-04 18:03:47] 2025-06-04 15:15:35,857 | INFO     | all job control threads have been joined
[2025-06-04 18:03:47] 2025-06-04 15:15:35,904 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:03:47] 2025-06-04 15:15:35,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:03:47] 2025-06-04 15:15:35,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:03:47] 2025-06-04 15:15:36,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:03:47] 2025-06-04 15:15:36,399 | INFO     | all data control threads have been joined
[2025-06-04 18:03:47] 2025-06-04 15:15:36,522 | INFO     | all payload control threads have been joined
[2025-06-04 18:03:47] 2025-06-04 15:15:36,857 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:36,862 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:36,864 | INFO     | [job] control thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:36,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:03:47] 2025-06-04 15:15:37,012 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,020 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,235 | INFO     | [job] validate thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,387 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,391 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,404 | INFO     | [data] control thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,528 | INFO     | [payload] control thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,558 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:37,875 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:38,045 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:38,170 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:38,228 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:39,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:03:47] 2025-06-04 15:15:43,067 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:03:47] 2025-06-04 15:15:45,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624388507456)>', '<ExcThread(monitor, started 140623126456064)>']
[2025-06-04 18:03:47] 2025-06-04 15:15:45,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:03:47] 2025-06-04 15:15:45,964 | INFO     | [monitor] control thread has ended
[2025-06-04 18:03:47] 2025-06-04 15:15:50,161 | INFO     | all workflow threads have been joined
[2025-06-04 18:03:47] 2025-06-04 15:15:50,161 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:03:47] 2025-06-04 15:15:50,162 | INFO     | traces error code: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:50,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:03:47] 2025-06-04 15:15:50,393 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:03:47] 2025-06-04 15:15:50,408 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:03:47] 2025-06-04 15:15:50,443 [wrapper] pilotpid: 15734
[2025-06-04 18:03:47] 2025-06-04 15:15:50,452 [wrapper] Pilot exit status: 0
[2025-06-04 18:03:47] 2025-06-04 15:15:50,751 [wrapper] pandaids: 6677917832
[2025-06-04 18:03:47] 2025-06-04 15:15:51,012 [wrapper] cleanup supervisor_pilot 25937 15735
[2025-06-04 18:03:47] 2025-06-04 15:15:51,105 [wrapper] Test setup, not cleaning
[2025-06-04 18:03:47] 2025-06-04 15:15:51,148 [wrapper] apfmon messages muted
[2025-06-04 18:03:47] 2025-06-04 15:15:51,218 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:03:47] 2025-06-04 15:15:51,312 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:03:47]  *** Error codes and diagnostics ***
[2025-06-04 18:03:47]     "exeErrorCode": 0,
[2025-06-04 18:03:47]     "exeErrorDiag": "",
[2025-06-04 18:03:47]     "pilotErrorCode": 0,
[2025-06-04 18:03:47]     "pilotErrorDiag": "",
[2025-06-04 18:03:47]  *** Listing of results directory ***
[2025-06-04 18:03:47] total 392524
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:56 queuedata.json
[2025-06-04 18:03:47] -rwx------. 1 boinc boinc     37140 Jun  3 19:57 runpilot2-wrapper.sh
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:03:47] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:30 run_atlas
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:30 job.xml
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc 215172307 Jun  4 13:30 EVNT.45006593._001655.pool.root.1
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc      6393 Jun  4 13:30 init_data.xml
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:30 start_atlas.sh
[2025-06-04 18:03:47] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:30 shared
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc    508881 Jun  4 13:30 input.tar.gz
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:30 boinc_lockfile
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:30 pandaJob.out
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc    986812 Jun  4 13:31 agis_schedconf.cvmfs.json
[2025-06-04 18:03:47] drwx------. 4 boinc boinc      4096 Jun  4 13:31 pilot3
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc 179842739 Jun  4 17:13 HITS.45006595._041339.pool.root.1
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:13 boinc_task_state.xml
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc      1042 Jun  4 17:13 memory_monitor_summary.json
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc   1598969 Jun  4 17:14 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc    386752 Jun  4 17:14 log.45006595._041339.job.log.tgz.1
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc        95 Jun  4 17:14 pilot_heartbeat.json
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc      7683 Jun  4 17:15 heartbeat.json
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc      4417 Jun  4 17:15 pilotlog.txt
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc   1170978 Jun  4 17:15 log.45006595._041339.job.log.1
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc       357 Jun  4 17:15 output.list
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:15 runtime_log
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc   1576960 Jun  4 17:15 result.tar.gz
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc      8673 Jun  4 17:15 runtime_log.err
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc       656 Jun  4 17:15 rRALDmL4kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCVlKDm79v2Im.diag
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:03 boinc_mmap_file
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:03 wrapper_checkpoint.txt
[2025-06-04 18:03:47] -rw-r--r--. 1 boinc boinc     20541 Jun  4 18:03 stderr.txt
[2025-06-04 18:03:47] HITS file was successfully produced:
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc 179842739 Jun  4 17:13 shared/HITS.pool.root.1
[2025-06-04 18:03:47]  *** Contents of shared directory: ***
[2025-06-04 18:03:47] total 387816
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc 215172307 Jun  4 13:30 ATLAS.root_0
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:30 start_atlas.sh
[2025-06-04 18:03:47] -rw-r--r--. 2 boinc boinc    508881 Jun  4 13:30 input.tar.gz
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc 179842739 Jun  4 17:13 HITS.pool.root.1
[2025-06-04 18:03:47] -rw-------. 1 boinc boinc   1576960 Jun  4 17:15 result.tar.gz
18:03:49 (8023): run_atlas exited; CPU time 50452.184184
18:03:49 (8023): called boinc_finish(0)

</stderr_txt>
]]>

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