Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:07:53 (195766): wrapper (7.7.26015): starting
22:07:53 (195766): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 22:07:53] Arguments: --nthreads 4
[2025-06-05 22:07:53] Threads: 4
[2025-06-05 22:07:53] Checking for CVMFS
[2025-06-05 22:07:53] No cvmfs_config command found, will try listing directly
[2025-06-05 22:07:53] CVMFS is ok
[2025-06-05 22:07:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 22:07:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 22:07:53] Further information can be found at the LHC@home message board.
[2025-06-05 22:07:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 22:07:53] Checking for apptainer binary...
[2025-06-05 22:07:53] which: no apptainer in ((null))
[2025-06-05 22:07:53] apptainer is not installed, using version from CVMFS
[2025-06-05 22:07:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 22:07:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-06-05 22:07:53] apptainer works
[2025-06-05 22:07:53] Set ATHENA_PROC_NUMBER=4
[2025-06-05 22:07:53] Set ATHENA_CORE_NUMBER=4
[2025-06-05 22:07:53] Starting ATLAS job with PandaID=6677919854
[2025-06-05 22:07:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 01:17:55]  *** The last 200 lines of the pilot log: ***
[2025-06-06 01:17:55] 2025-06-05 23:12:55,558 | INFO     | mean x: 1749159630.5
[2025-06-06 01:17:55] 2025-06-05 23:12:55,558 | INFO     | mean y: 2322195.269230769
[2025-06-06 01:17:55] 2025-06-05 23:12:55,558 | INFO     | -- intersect: -7940068669.130544
[2025-06-06 01:17:55] 2025-06-05 23:12:55,558 | INFO     | intersect: -7940068669.130544
[2025-06-06 01:17:55] 2025-06-05 23:12:55,559 | INFO     | chi2: 2.3908568125524052
[2025-06-06 01:17:55] 2025-06-05 23:12:55,559 | INFO     | sufficient remaining disk space (3461155389440 B)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,559 | INFO     | sum of square deviations: 1719429448.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,560 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,561 | INFO     | sum of deviations: 18672125192.999996
[2025-06-06 01:17:55] 2025-06-05 23:12:55,561 | INFO     | mean x: 1749159478.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,561 | INFO     | mean y: 2332321.186440678
[2025-06-06 01:17:55] 2025-06-05 23:12:55,562 | INFO     | -- intersect: -18992645805.847782
[2025-06-06 01:17:55] 2025-06-05 23:12:55,562 | INFO     | intersect: -18992645805.847782
[2025-06-06 01:17:55] 2025-06-05 23:12:55,562 | INFO     | chi2: 1.7324090885761043
[2025-06-06 01:17:55] 2025-06-05 23:12:55,562 | INFO     | current chi2=1.7324090885761043 (change=27.54024082577168 %)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,563 | INFO     | sum of square deviations: 1577789583.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,564 | INFO     | sum of deviations: 18210738242.499992
[2025-06-06 01:17:55] 2025-06-05 23:12:55,564 | INFO     | mean x: 1749159325.5
[2025-06-06 01:17:55] 2025-06-05 23:12:55,564 | INFO     | mean y: 2331824.238372093
[2025-06-06 01:17:55] 2025-06-05 23:12:55,565 | INFO     | -- intersect: -20186344133.77012
[2025-06-06 01:17:55] 2025-06-05 23:12:55,565 | INFO     | intersect: -20186344133.77012
[2025-06-06 01:17:55] 2025-06-05 23:12:55,565 | INFO     | chi2: 1.7339930601164621
[2025-06-06 01:17:55] 2025-06-05 23:12:55,565 | INFO     | current chi2=1.7339930601164621 (change=-0.09143172653635313 %)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,565 | INFO     | right removable region: 171
[2025-06-06 01:17:55] 2025-06-05 23:12:55,566 | INFO     | sum of square deviations: 1719429448.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,567 | INFO     | sum of deviations: -21377188798.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,567 | INFO     | mean x: 1749159783.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,567 | INFO     | mean y: 2352265.3672316386
[2025-06-06 01:17:55] 2025-06-05 23:12:55,567 | INFO     | -- intersect: 21749170061.557327
[2025-06-06 01:17:55] 2025-06-05 23:12:55,567 | INFO     | intersect: 21749170061.557327
[2025-06-06 01:17:55] 2025-06-05 23:12:55,568 | INFO     | chi2: 0.7313261107946201
[2025-06-06 01:17:55] 2025-06-05 23:12:55,568 | INFO     | current chi2=0.7313261107946201 (change=69.4115470673512 %)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,568 | INFO     | sum of square deviations: 1577789583.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,570 | INFO     | sum of deviations: -23680416001.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,570 | INFO     | mean x: 1749159935.5
[2025-06-06 01:17:55] 2025-06-05 23:12:55,570 | INFO     | mean y: 2354757.581395349
[2025-06-06 01:17:55] 2025-06-05 23:12:55,570 | INFO     | -- intersect: 26254800185.80192
[2025-06-06 01:17:55] 2025-06-05 23:12:55,570 | INFO     | intersect: 26254800185.80192
[2025-06-06 01:17:55] 2025-06-05 23:12:55,571 | INFO     | chi2: 0.7046144854263349
[2025-06-06 01:17:55] 2025-06-05 23:12:55,571 | INFO     | current chi2=0.7046144854263349 (change=3.652491682439967 %)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,571 | INFO     | left removable region: 20
[2025-06-06 01:17:55] 2025-06-05 23:12:55,571 | INFO     | sum of square deviations: 1067554900.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,572 | INFO     | sum of deviations: -10940232880.000004
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | mean x: 1749159905.0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | mean y: 2364738.2649006625
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | -- intersect: 17927641185.460903
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | intersect: 17927641185.460903
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | chi2: 0.022455674370545287
[2025-06-06 01:17:55] 2025-06-05 23:12:55,573 | INFO     | -- intersect: 17927641185.460903
[2025-06-06 01:17:55] 2025-06-05 23:12:55,574 | INFO     | current memory leak: -10.25 B/s (using 151 data points, chi2=0.02)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | ..............................
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . Timing measurements:
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . get job = 0 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . initial setup = 1 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . payload setup = 6 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . stage-in = 0 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,575 | INFO     | . payload execution = 11060 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,576 | INFO     | . stage-out = 1 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,576 | INFO     | . log creation = 0 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,576 | INFO     | ..............................
[2025-06-06 01:17:55] 2025-06-05 23:12:55,587 | INFO     | size of work directory /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6677919854: 2575868 B (within 2537553920 B limit)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,603 | INFO     | pfn file=/scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6677919854/HITS.45006595._041780.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,618 | INFO     | total size of present files: 0 B (workdir size: 2575868 B)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,634 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6677919854/HITS.45006595._041780.pool.root.1 since it does not exist
[2025-06-06 01:17:55] 2025-06-05 23:12:55,690 | INFO     | 
[2025-06-06 01:17:55] 2025-06-05 23:12:55,690 | INFO     | job summary report
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | --------------------------------------------------
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | PanDA job id: 6677919854
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | task id: 45006595
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | errors: (none)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | pilot state: finished 
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | transexitcode: 0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,691 | INFO     | exeerrorcode: 0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | exeerrordiag: 
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | exitcode: 0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | exitmsg: OK
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | cpuconsumptiontime: 41992 s
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | nevents: 400
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | neventsw: 0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | pid: 206565
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | pgrp: 206565
[2025-06-06 01:17:55] 2025-06-05 23:12:55,692 | INFO     | corecount: 4
[2025-06-06 01:17:55] 2025-06-05 23:12:55,693 | INFO     | event service: False
[2025-06-06 01:17:55] 2025-06-05 23:12:55,693 | INFO     | sizes: {0: 2397131, 1: 2397330, 5: 2397536, 12: 2397592, 11070: 2426601, 11072: 2435748, 11076: 2435890}
[2025-06-06 01:17:55] 2025-06-05 23:12:55,693 | INFO     | --------------------------------------------------
[2025-06-06 01:17:55] 2025-06-05 23:12:55,693 | INFO     | 
[2025-06-06 01:17:55] 2025-06-05 23:12:55,693 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2025-06-06 01:17:55] 2025-06-05 23:12:55,711 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,713 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,714 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,714 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,714 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 01:17:55] 2025-06-05 23:12:55,714 | INFO     | job 6677919854 has completed (purged errors)
[2025-06-06 01:17:55] 2025-06-05 23:12:55,714 | INFO     | overall cleanup function is called
[2025-06-06 01:17:55] 2025-06-05 23:12:55,922 | INFO     | number of running child processes to parent process 206565: 1
[2025-06-06 01:17:55] 2025-06-05 23:12:55,922 | INFO     | maximum number of monitored processes: 6
[2025-06-06 01:17:55] 2025-06-05 23:12:55,922 | INFO     | aborting job monitoring since job object (job id=6677919854) has expired
[2025-06-06 01:17:55] 2025-06-05 23:12:56,723 | INFO     | --- collectZombieJob: --- 10, [206565]
[2025-06-06 01:17:55] 2025-06-05 23:12:56,724 | INFO     | zombie collector waiting for pid 206565
[2025-06-06 01:17:55] 2025-06-05 23:12:56,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 01:17:55] 2025-06-05 23:12:56,724 | INFO     | collected zombie processes
[2025-06-06 01:17:55] 2025-06-05 23:12:56,724 | INFO     | will attempt to kill all subprocesses of pid=206565
[2025-06-06 01:17:55] 2025-06-05 23:12:56,947 | INFO     | process IDs to be killed: [206565] (in reverse order)
[2025-06-06 01:17:55] 2025-06-05 23:12:57,012 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 01:17:55] 2025-06-05 23:12:57,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 01:17:55] 2025-06-05 23:12:57,019 | INFO     | did not find any defunct processes belonging to 206565
[2025-06-06 01:17:55] 2025-06-05 23:12:57,024 | INFO     | did not find any defunct processes belonging to 206565
[2025-06-06 01:17:55] 2025-06-05 23:12:57,024 | INFO     | ready for new job
[2025-06-06 01:17:55] 2025-06-05 23:12:57,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 01:17:55] 2025-06-05 23:12:57,026 | INFO     | **************************************
[2025-06-06 01:17:55] 2025-06-05 23:12:57,026 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 01:17:55] 2025-06-05 23:12:57,026 | INFO     | **************************************
[2025-06-06 01:17:55] 2025-06-05 23:12:57,026 | INFO     | 
[2025-06-06 01:17:55] 2025-06-05 23:12:57,028 | INFO     | architecture information:
[2025-06-06 01:17:55] 2025-06-05 23:12:57,029 | INFO     | executing command: cat /etc/os-release
[2025-06-06 01:17:55] 2025-06-05 23:12:57,042 | INFO     | cat /etc/os-release:
[2025-06-06 01:17:55] NAME="CentOS Linux"
[2025-06-06 01:17:55] VERSION="7 (Core)"
[2025-06-06 01:17:55] ID="centos"
[2025-06-06 01:17:55] ID_LIKE="rhel fedora"
[2025-06-06 01:17:55] VERSION_ID="7"
[2025-06-06 01:17:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 01:17:55] ANSI_COLOR="0;31"
[2025-06-06 01:17:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 01:17:55] HOME_URL="https://www.centos.org/"
[2025-06-06 01:17:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 01:17:55] 
[2025-06-06 01:17:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 01:17:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 01:17:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 01:17:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 01:17:55] 
[2025-06-06 01:17:55] 2025-06-05 23:12:57,043 | INFO     | **************************************
[2025-06-06 01:17:55] 2025-06-05 23:12:57,545 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2025-06-06 01:17:55] 2025-06-05 23:12:57,559 | INFO     | sufficient remaining disk space (3461158535168 B)
[2025-06-06 01:17:55] 2025-06-05 23:12:57,559 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 01:17:55] 2025-06-05 23:12:57,559 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 01:17:55] 2025-06-05 23:12:57,560 | INFO     | update_server=False
[2025-06-06 01:17:55] 2025-06-05 23:12:57,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 01:17:55] 2025-06-05 23:12:57,560 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 01:17:55] 2025-06-05 23:12:57,560 | INFO     | aborting loop
[2025-06-06 01:17:55] 2025-06-05 23:12:57,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 01:17:55] 2025-06-05 23:12:57,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 01:17:55] 2025-06-05 23:12:57,561 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 01:17:55] 2025-06-05 23:12:57,561 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 01:17:55] 2025-06-05 23:12:57,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 01:17:55] 2025-06-05 23:12:57,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 01:17:55] 2025-06-05 23:12:58,037 | INFO     | all data control threads have been joined
[2025-06-06 01:17:55] 2025-06-05 23:12:58,472 | INFO     | all payload control threads have been joined
[2025-06-06 01:17:55] 2025-06-05 23:12:58,564 | INFO     | [job] retrieve thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:58,565 | INFO     | [job] job monitor thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:58,566 | INFO     | [job] queue monitor thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:58,622 | INFO     | [payload] validate_post thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:58,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 01:17:55] 2025-06-05 23:12:58,875 | INFO     | [job] validate thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,042 | INFO     | [data] control thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,116 | INFO     | [data] copytool_in thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,257 | INFO     | all job control threads have been joined
[2025-06-06 01:17:55] 2025-06-05 23:12:59,478 | INFO     | [payload] control thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,517 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,518 | INFO     | [payload] failed_post thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:12:59,754 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:00,018 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:00,038 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:00,262 | INFO     | [job] control thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:00,769 | INFO     | [data] copytool_out thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:01,567 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 01:17:55] 2025-06-05 23:13:02,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22396715140928)>', '<ExcThread(monitor, started 22396478129920)>']
[2025-06-06 01:17:55] 2025-06-05 23:13:02,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 01:17:55] 2025-06-05 23:13:02,586 | INFO     | [monitor] control thread has ended
[2025-06-06 01:17:55] 2025-06-05 23:13:07,336 | INFO     | all workflow threads have been joined
[2025-06-06 01:17:55] 2025-06-05 23:13:07,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 01:17:55] 2025-06-05 23:13:07,337 | INFO     | traces error code: 0
[2025-06-06 01:17:55] 2025-06-05 23:13:07,337 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 01:17:55] 2025-06-05 23:13:07,446 [wrapper] ==== pilot stdout END ====
[2025-06-06 01:17:55] 2025-06-05 23:13:07,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 01:17:55] 2025-06-05 23:13:07,451 [wrapper] pilotpid: 199655
[2025-06-06 01:17:55] 2025-06-05 23:13:07,453 [wrapper] Pilot exit status: 0
[2025-06-06 01:17:55] 2025-06-05 23:13:07,461 [wrapper] pandaids: 6677919854
[2025-06-06 01:17:55] 2025-06-05 23:13:07,501 [wrapper] cleanup supervisor_pilot  378081 199656
[2025-06-06 01:17:55] 2025-06-05 23:13:07,503 [wrapper] Test setup, not cleaning
[2025-06-06 01:17:55] 2025-06-05 23:13:07,505 [wrapper] apfmon messages muted
[2025-06-06 01:17:55] 2025-06-05 23:13:07,508 [wrapper] ==== wrapper stdout END ====
[2025-06-06 01:17:55] 2025-06-05 23:13:07,510 [wrapper] ==== wrapper stderr END ====
[2025-06-06 01:17:55]  *** Error codes and diagnostics ***
[2025-06-06 01:17:55]     "exeErrorCode": 0,
[2025-06-06 01:17:55]     "exeErrorDiag": "",
[2025-06-06 01:17:55]     "pilotErrorCode": 0,
[2025-06-06 01:17:55]     "pilotErrorDiag": "",
[2025-06-06 01:17:55]  *** Listing of results directory ***
[2025-06-06 01:17:55] total 387524
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-06 01:17:55] -rwx------ 1 boinc boinc     37140 Jun  3 20:03 runpilot2-wrapper.sh
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc      5111 Jun  3 20:03 queuedata.json
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc       100 Jun  5 22:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 01:17:55] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 22:07 run_atlas
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc       105 Jun  5 22:07 job.xml
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc 216347342 Jun  5 22:07 EVNT.45006593._001675.pool.root.1
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc      6417 Jun  5 22:07 init_data.xml
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc     15093 Jun  5 22:07 start_atlas.sh
[2025-06-06 01:17:55] drwxrwx--x 2 boinc boinc      4096 Jun  5 22:07 shared
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc    508879 Jun  5 22:07 input.tar.gz
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc         0 Jun  5 22:07 boinc_lockfile
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc      2524 Jun  5 22:07 pandaJob.out
[2025-06-06 01:17:55] -rw------- 1 boinc boinc    987599 Jun  5 22:08 agis_schedconf.cvmfs.json
[2025-06-06 01:17:55] drwx------ 4 boinc boinc      4096 Jun  5 22:08 pilot3
[2025-06-06 01:17:55] -rw------- 1 boinc boinc        95 Jun  6 01:12 pilot_heartbeat.json
[2025-06-06 01:17:55] -rw------- 1 boinc boinc 173912406 Jun  6 01:12 HITS.45006595._041780.pool.root.1
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc       529 Jun  6 01:12 boinc_task_state.xml
[2025-06-06 01:17:55] -rw------- 1 boinc boinc      1032 Jun  6 01:12 memory_monitor_summary.json
[2025-06-06 01:17:55] -rw------- 1 boinc boinc   1598969 Jun  6 01:12 agis_ddmendpoints.agis.ALL.json
[2025-06-06 01:17:55] -rw------- 1 boinc boinc    300729 Jun  6 01:12 log.45006595._041780.job.log.tgz.1
[2025-06-06 01:17:55] -rw------- 1 boinc boinc      7730 Jun  6 01:12 heartbeat.json
[2025-06-06 01:17:55] -rw------- 1 boinc boinc      4487 Jun  6 01:13 pilotlog.txt
[2025-06-06 01:17:55] -rw------- 1 boinc boinc   1057599 Jun  6 01:13 log.45006595._041780.job.log.1
[2025-06-06 01:17:55] -rw------- 1 boinc boinc       357 Jun  6 01:13 output.list
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc       620 Jun  6 01:13 runtime_log
[2025-06-06 01:17:55] -rw------- 1 boinc boinc   1382400 Jun  6 01:13 result.tar.gz
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc      9021 Jun  6 01:13 runtime_log.err
[2025-06-06 01:17:55] -rw------- 1 boinc boinc       664 Jun  6 01:13 M4WMDmXAlg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSXZKDmKx0MZn.diag
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc        26 Jun  6 01:17 wrapper_checkpoint.txt
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc      8192 Jun  6 01:17 boinc_mmap_file
[2025-06-06 01:17:55] -rw-r--r-- 1 boinc boinc     21010 Jun  6 01:17 stderr.txt
[2025-06-06 01:17:55] HITS file was successfully produced:
[2025-06-06 01:17:55] -rw------- 1 boinc boinc 173912406 Jun  6 01:12 shared/HITS.pool.root.1
[2025-06-06 01:17:55]  *** Contents of shared directory: ***
[2025-06-06 01:17:55] total 382996
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc 216347342 Jun  5 22:07 ATLAS.root_0
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc     15093 Jun  5 22:07 start_atlas.sh
[2025-06-06 01:17:55] -rw-r--r-- 2 boinc boinc    508879 Jun  5 22:07 input.tar.gz
[2025-06-06 01:17:55] -rw------- 1 boinc boinc 173912406 Jun  6 01:12 HITS.pool.root.1
[2025-06-06 01:17:55] -rw------- 1 boinc boinc   1382400 Jun  6 01:13 result.tar.gz
01:17:57 (195766): run_atlas exited; CPU time 42309.017050
01:17:57 (195766): called boinc_finish(0)

</stderr_txt>
]]>

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