Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:42:08 (3493494): wrapper (7.7.26015): starting
08:42:08 (3493494): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 08:42:08] Arguments: --nthreads 4
[2025-06-05 08:42:08] Threads: 4
[2025-06-05 08:42:08] Checking for CVMFS
[2025-06-05 08:42:08] No cvmfs_config command found, will try listing directly
[2025-06-05 08:42:08] CVMFS is ok
[2025-06-05 08:42:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 08:42:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 08:42:08] Further information can be found at the LHC@home message board.
[2025-06-05 08:42:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 08:42:08] Checking for apptainer binary...
[2025-06-05 08:42:08] which: no apptainer in ((null))
[2025-06-05 08:42:08] apptainer is not installed, using version from CVMFS
[2025-06-05 08:42:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 08:42:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-06-05 08:42:08] apptainer works
[2025-06-05 08:42:08] Set ATHENA_PROC_NUMBER=4
[2025-06-05 08:42:08] Set ATHENA_CORE_NUMBER=4
[2025-06-05 08:42:08] Starting ATLAS job with PandaID=6677917890
[2025-06-05 08:42:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:33:28]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:33:28] 2025-06-05 09:31:22,111 | INFO     | 10144s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 11:33:28] 2025-06-05 09:31:22,763 | INFO     | monitor loop #753: job 0:6677917890 is in state 'finished'
[2025-06-05 11:33:28] 2025-06-05 09:31:22,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,924 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 11:33:28] 2025-06-05 09:31:22,925 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6677917890/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,926 | INFO     | extracted standard info from prmon json
[2025-06-05 11:33:28] 2025-06-05 09:31:22,926 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:33:28] 2025-06-05 09:31:22,926 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:33:28] 2025-06-05 09:31:22,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:33:28] 2025-06-05 09:31:22,927 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:33:28] 2025-06-05 09:31:22,930 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:33:28] 2025-06-05 09:31:22,931 | INFO     | sum of square deviations: 1418361477.5
[2025-06-05 11:33:28] 2025-06-05 09:31:22,932 | INFO     | sum of deviations: -12897228291.999996
[2025-06-05 11:33:28] 2025-06-05 09:31:22,932 | INFO     | mean x: 1749110798.5
[2025-06-05 11:33:28] 2025-06-05 09:31:22,932 | INFO     | mean y: 2376748.0843373495
[2025-06-05 11:33:28] 2025-06-05 09:31:22,932 | INFO     | -- intersect: 15907124327.677921
[2025-06-05 11:33:28] 2025-06-05 09:31:22,932 | INFO     | intersect: 15907124327.677921
[2025-06-05 11:33:28] 2025-06-05 09:31:22,933 | INFO     | chi2: 1.8277785546877263
[2025-06-05 11:33:28] 2025-06-05 09:31:22,933 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,934 | INFO     | sum of deviations: -12162072640.000015
[2025-06-05 11:33:28] 2025-06-05 09:31:22,934 | INFO     | mean x: 1749110646.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,934 | INFO     | mean y: 2377649.5776397516
[2025-06-05 11:33:28] 2025-06-05 09:31:22,934 | INFO     | -- intersect: 16441763120.089785
[2025-06-05 11:33:28] 2025-06-05 09:31:22,934 | INFO     | intersect: 16441763120.089785
[2025-06-05 11:33:28] 2025-06-05 09:31:22,935 | INFO     | chi2: 1.8261501095394375
[2025-06-05 11:33:28] 2025-06-05 09:31:22,935 | INFO     | current chi2=1.8261501095394375 (change=0.08909422556208278 %)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,935 | INFO     | right removable region: 160
[2025-06-05 11:33:28] 2025-06-05 09:31:22,935 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,936 | INFO     | sum of deviations: -38258134452.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,936 | INFO     | mean x: 1749110951.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,937 | INFO     | mean y: 2407451.8385093166
[2025-06-05 11:33:28] 2025-06-05 09:31:22,937 | INFO     | -- intersect: 51715659619.20416
[2025-06-05 11:33:28] 2025-06-05 09:31:22,937 | INFO     | intersect: 51715659619.20416
[2025-06-05 11:33:28] 2025-06-05 09:31:22,937 | INFO     | chi2: 0.2369969214385361
[2025-06-05 11:33:28] 2025-06-05 09:31:22,937 | INFO     | current chi2=0.2369969214385361 (change=87.03360859384705 %)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,938 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | sum of deviations: -35097832239.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | mean x: 1749111103.5
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | mean y: 2403293.794871795
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | -- intersect: 52153484606.49472
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | intersect: 52153484606.49472
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | chi2: 0.23342381576242824
[2025-06-05 11:33:28] 2025-06-05 09:31:22,939 | INFO     | current chi2=0.23342381576242824 (change=1.5076591098397552 %)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,940 | INFO     | left removable region: 20
[2025-06-05 11:33:28] 2025-06-05 09:31:22,940 | INFO     | sum of square deviations: 850825255.0
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | sum of deviations: -22841798645.500004
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | mean x: 1749111225.5
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | mean y: 2388736.1071428573
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | -- intersect: 46960146732.43595
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | intersect: 46960146732.43595
[2025-06-05 11:33:28] 2025-06-05 09:31:22,941 | INFO     | chi2: 0.20655911914986233
[2025-06-05 11:33:28] 2025-06-05 09:31:22,942 | INFO     | -- intersect: 46960146732.43595
[2025-06-05 11:33:28] 2025-06-05 09:31:22,942 | INFO     | current memory leak: -26.85 B/s (using 140 data points, chi2=0.21)
[2025-06-05 11:33:28] 2025-06-05 09:31:22,942 | INFO     | ..............................
[2025-06-05 11:33:28] 2025-06-05 09:31:22,942 | INFO     | . Timing measurements:
[2025-06-05 11:33:28] 2025-06-05 09:31:22,942 | INFO     | . get job = 0 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . initial setup = 1 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . payload setup = 6 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . stage-in = 0 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . payload execution = 10110 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . stage-out = 0 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | . log creation = 0 s
[2025-06-05 11:33:28] 2025-06-05 09:31:22,943 | INFO     | ..............................
[2025-06-05 11:33:28] 2025-06-05 09:31:23,050 | INFO     | 
[2025-06-05 11:33:28] 2025-06-05 09:31:23,050 | INFO     | job summary report
[2025-06-05 11:33:28] 2025-06-05 09:31:23,050 | INFO     | --------------------------------------------------
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | PanDA job id: 6677917890
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | task id: 45006595
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | errors: (none)
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | pilot state: finished 
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | transexitcode: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | exeerrorcode: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | exeerrordiag: 
[2025-06-05 11:33:28] 2025-06-05 09:31:23,051 | INFO     | exitcode: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | exitmsg: OK
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | cpuconsumptiontime: 38522 s
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | nevents: 400
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | neventsw: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | pid: 3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | pgrp: 3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | corecount: 4
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | event service: False
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | sizes: {0: 2397177, 1: 2397376, 4: 2397582, 12: 2397610, 10121: 2425977, 10122: 2434940, 10123: 2435124, 10129: 2435294}
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | --------------------------------------------------
[2025-06-05 11:33:28] 2025-06-05 09:31:23,052 | INFO     | 
[2025-06-05 11:33:28] 2025-06-05 09:31:23,053 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2025-06-05 11:33:28] 2025-06-05 09:31:23,070 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,071 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,073 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:33:28] 2025-06-05 09:31:23,073 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,073 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:33:28] 2025-06-05 09:31:23,073 | INFO     | job 6677917890 has completed (purged errors)
[2025-06-05 11:33:28] 2025-06-05 09:31:23,073 | INFO     | overall cleanup function is called
[2025-06-05 11:33:28] 2025-06-05 09:31:24,080 | INFO     | --- collectZombieJob: --- 10, [3504170]
[2025-06-05 11:33:28] 2025-06-05 09:31:24,080 | INFO     | zombie collector waiting for pid 3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:24,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:33:28] 2025-06-05 09:31:24,080 | INFO     | collected zombie processes
[2025-06-05 11:33:28] 2025-06-05 09:31:24,081 | INFO     | will attempt to kill all subprocesses of pid=3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:24,289 | INFO     | process IDs to be killed: [3504170] (in reverse order)
[2025-06-05 11:33:28] 2025-06-05 09:31:24,348 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:33:28] 2025-06-05 09:31:24,349 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:33:28] 2025-06-05 09:31:24,355 | INFO     | did not find any defunct processes belonging to 3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:24,360 | INFO     | did not find any defunct processes belonging to 3504170
[2025-06-05 11:33:28] 2025-06-05 09:31:24,360 | INFO     | ready for new job
[2025-06-05 11:33:28] 2025-06-05 09:31:24,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:33:28] 2025-06-05 09:31:24,362 | INFO     | **************************************
[2025-06-05 11:33:28] 2025-06-05 09:31:24,362 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:33:28] 2025-06-05 09:31:24,362 | INFO     | **************************************
[2025-06-05 11:33:28] 2025-06-05 09:31:24,362 | INFO     | 
[2025-06-05 11:33:28] 2025-06-05 09:31:24,364 | INFO     | architecture information:
[2025-06-05 11:33:28] 2025-06-05 09:31:24,364 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:33:28] 2025-06-05 09:31:24,375 | INFO     | cat /etc/os-release:
[2025-06-05 11:33:28] NAME="CentOS Linux"
[2025-06-05 11:33:28] VERSION="7 (Core)"
[2025-06-05 11:33:28] ID="centos"
[2025-06-05 11:33:28] ID_LIKE="rhel fedora"
[2025-06-05 11:33:28] VERSION_ID="7"
[2025-06-05 11:33:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:33:28] ANSI_COLOR="0;31"
[2025-06-05 11:33:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:33:28] HOME_URL="https://www.centos.org/"
[2025-06-05 11:33:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:33:28] 
[2025-06-05 11:33:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:33:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:33:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:33:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:33:28] 
[2025-06-05 11:33:28] 2025-06-05 09:31:24,376 | INFO     | **************************************
[2025-06-05 11:33:28] 2025-06-05 09:31:24,879 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2025-06-05 11:33:28] 2025-06-05 09:31:24,891 | INFO     | sufficient remaining disk space (3471245836288 B)
[2025-06-05 11:33:28] 2025-06-05 09:31:24,891 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:33:28] 2025-06-05 09:31:24,891 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:33:28] 2025-06-05 09:31:24,891 | INFO     | update_server=False
[2025-06-05 11:33:28] 2025-06-05 09:31:24,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:33:28] 2025-06-05 09:31:24,892 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:33:28] 2025-06-05 09:31:24,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:33:28] 2025-06-05 09:31:25,064 | INFO     | all data control threads have been joined
[2025-06-05 11:33:28] 2025-06-05 09:31:25,137 | INFO     | all job control threads have been joined
[2025-06-05 11:33:28] 2025-06-05 09:31:25,266 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 11:33:28] 2025-06-05 09:31:25,267 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 11:33:28] 2025-06-05 09:31:25,267 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:33:28] 2025-06-05 09:31:25,267 | INFO     | will abort loop
[2025-06-05 11:33:28] 2025-06-05 09:31:25,381 | INFO     | PID=3497400 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 11:33:28] 2025-06-05 09:31:25,381 | INFO     | .. there are 3 such processes running
[2025-06-05 11:33:28] 2025-06-05 09:31:25,381 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:33:28] 2025-06-05 09:31:25,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:33:28] 2025-06-05 09:31:25,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:33:28] 2025-06-05 09:31:25,494 | INFO     | all payload control threads have been joined
[2025-06-05 11:33:28] 2025-06-05 09:31:25,897 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:25,898 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:25,927 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,069 | INFO     | [data] control thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,094 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,142 | INFO     | [job] control thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,273 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,366 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,499 | INFO     | [payload] control thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,724 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,894 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:26,945 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:27,242 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:27,354 | INFO     | [job] validate thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:28,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:33:28] 2025-06-05 09:31:32,135 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:35,856 | INFO     | job.realtimelogging is not enabled
[2025-06-05 11:33:28] 2025-06-05 09:31:36,861 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:33:28] 2025-06-05 09:31:38,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22994197493568)>', '<ExcThread(monitor, started 22993954625280)>']
[2025-06-05 11:33:28] 2025-06-05 09:31:39,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:33:28] 2025-06-05 09:31:39,452 | INFO     | [monitor] control thread has ended
[2025-06-05 11:33:28] 2025-06-05 09:31:43,643 | INFO     | all workflow threads have been joined
[2025-06-05 11:33:28] 2025-06-05 09:31:43,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:33:28] 2025-06-05 09:31:43,643 | INFO     | traces error code: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:43,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:33:28] 2025-06-05 09:31:43,750 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:33:28] 2025-06-05 09:31:43,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:33:28] 2025-06-05 09:31:43,755 [wrapper] pilotpid: 3497400
[2025-06-05 11:33:28] 2025-06-05 09:31:43,757 [wrapper] Pilot exit status: 0
[2025-06-05 11:33:28] 2025-06-05 09:31:43,765 [wrapper] pandaids: 6677917890
[2025-06-05 11:33:28] 2025-06-05 09:31:43,803 [wrapper] cleanup supervisor_pilot 3676986 3497401
[2025-06-05 11:33:28] 2025-06-05 09:31:43,806 [wrapper] Test setup, not cleaning
[2025-06-05 11:33:28] 2025-06-05 09:31:43,808 [wrapper] apfmon messages muted
[2025-06-05 11:33:28] 2025-06-05 09:31:43,810 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:33:28] 2025-06-05 09:31:43,812 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:33:28]  *** Error codes and diagnostics ***
[2025-06-05 11:33:28]     "exeErrorCode": 0,
[2025-06-05 11:33:28]     "exeErrorDiag": "",
[2025-06-05 11:33:28]     "pilotErrorCode": 0,
[2025-06-05 11:33:28]     "pilotErrorDiag": "",
[2025-06-05 11:33:28]  *** Listing of results directory ***
[2025-06-05 11:33:28] total 385632
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc      5111 Jun  3 19:58 queuedata.json
[2025-06-05 11:33:28] -rwx------ 1 boinc boinc     37140 Jun  3 19:58 runpilot2-wrapper.sh
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc       100 Jun  5 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:33:28] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 08:42 run_atlas
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc       105 Jun  5 08:42 job.xml
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc      6419 Jun  5 08:42 init_data.xml
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc 214465038 Jun  5 08:42 EVNT.45006593._001658.pool.root.1
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:42 start_atlas.sh
[2025-06-05 11:33:28] drwxrwx--x 2 boinc boinc      4096 Jun  5 08:42 shared
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc    508873 Jun  5 08:42 input.tar.gz
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc         0 Jun  5 08:42 boinc_lockfile
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc      2523 Jun  5 08:42 pandaJob.out
[2025-06-05 11:33:28] -rw------- 1 boinc boinc    986926 Jun  5 08:42 agis_schedconf.cvmfs.json
[2025-06-05 11:33:28] -rw------- 1 boinc boinc   1598969 Jun  5 08:42 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:33:28] drwx------ 4 boinc boinc      4096 Jun  5 08:42 pilot3
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc       528 Jun  5 11:30 boinc_task_state.xml
[2025-06-05 11:33:28] -rw------- 1 boinc boinc 174093911 Jun  5 11:30 HITS.45006595._041397.pool.root.1
[2025-06-05 11:33:28] -rw------- 1 boinc boinc        95 Jun  5 11:31 pilot_heartbeat.json
[2025-06-05 11:33:28] -rw------- 1 boinc boinc      1032 Jun  5 11:31 memory_monitor_summary.json
[2025-06-05 11:33:28] -rw------- 1 boinc boinc    280181 Jun  5 11:31 log.45006595._041397.job.log.tgz.1
[2025-06-05 11:33:28] -rw------- 1 boinc boinc      7726 Jun  5 11:31 heartbeat.json
[2025-06-05 11:33:28] -rw------- 1 boinc boinc      5016 Jun  5 11:31 pilotlog.txt
[2025-06-05 11:33:28] -rw------- 1 boinc boinc    966117 Jun  5 11:31 log.45006595._041397.job.log.1
[2025-06-05 11:33:28] -rw------- 1 boinc boinc       357 Jun  5 11:31 output.list
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc       620 Jun  5 11:31 runtime_log
[2025-06-05 11:33:28] -rw------- 1 boinc boinc   1269760 Jun  5 11:31 result.tar.gz
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc      9021 Jun  5 11:31 runtime_log.err
[2025-06-05 11:33:28] -rw------- 1 boinc boinc       663 Jun  5 11:31 7HiLDm94kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPVlKDm99X2Sn.diag
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc        26 Jun  5 11:33 wrapper_checkpoint.txt
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc      8192 Jun  5 11:33 boinc_mmap_file
[2025-06-05 11:33:28] -rw-r--r-- 1 boinc boinc     20906 Jun  5 11:33 stderr.txt
[2025-06-05 11:33:28] HITS file was successfully produced:
[2025-06-05 11:33:28] -rw------- 1 boinc boinc 174093911 Jun  5 11:30 shared/HITS.pool.root.1
[2025-06-05 11:33:28]  *** Contents of shared directory: ***
[2025-06-05 11:33:28] total 381220
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc 214465038 Jun  5 08:42 ATLAS.root_0
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc     15093 Jun  5 08:42 start_atlas.sh
[2025-06-05 11:33:28] -rw-r--r-- 2 boinc boinc    508873 Jun  5 08:42 input.tar.gz
[2025-06-05 11:33:28] -rw------- 1 boinc boinc 174093911 Jun  5 11:30 HITS.pool.root.1
[2025-06-05 11:33:28] -rw------- 1 boinc boinc   1269760 Jun  5 11:31 result.tar.gz
11:33:30 (3493494): run_atlas exited; CPU time 38807.687384
11:33:30 (3493494): called boinc_finish(0)

</stderr_txt>
]]>

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