Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:21:18 (3945254): wrapper (7.7.26015): starting
11:21:18 (3945254): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 11:21:18] Arguments: --nthreads 4
[2025-06-06 11:21:18] Threads: 4
[2025-06-06 11:21:18] Checking for CVMFS
[2025-06-06 11:21:18] No cvmfs_config command found, will try listing directly
[2025-06-06 11:21:18] CVMFS is ok
[2025-06-06 11:21:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 11:21:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 11:21:18] Further information can be found at the LHC@home message board.
[2025-06-06 11:21:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 11:21:18] Checking for apptainer binary...
[2025-06-06 11:21:18] which: no apptainer in ((null))
[2025-06-06 11:21:18] apptainer is not installed, using version from CVMFS
[2025-06-06 11:21:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 11:21:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-06 11:21:18] apptainer works
[2025-06-06 11:21:18] Set ATHENA_PROC_NUMBER=4
[2025-06-06 11:21:18] Set ATHENA_CORE_NUMBER=4
[2025-06-06 11:21:18] Starting ATLAS job with PandaID=6677919918
[2025-06-06 11:21:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 12:48:16]  *** The last 200 lines of the pilot log: ***
[2025-06-06 12:48:16]  lfn=log.45006595._041844.job.log.tgz.1
[2025-06-06 12:48:16]  mtime=0
[2025-06-06 12:48:16]  protocol_id=None
[2025-06-06 12:48:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 12:48:16]  replicas=None
[2025-06-06 12:48:16]  scope=mc23_13p6TeV
[2025-06-06 12:48:16]  status=None
[2025-06-06 12:48:16]  status_code=0
[2025-06-06 12:48:16]  storage_token=
[2025-06-06 12:48:16]  surl=/scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677919918/log.45006595._041844.job.log.tgz.1
[2025-06-06 12:48:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/14/log.45006595._041844.job.log.tgz.1
[2025-06-06 12:48:16]  workdir=None
[2025-06-06 12:48:16] ]
[2025-06-06 12:48:16] 2025-06-06 10:47:09,911 | INFO     | transferring file log.45006595._041844.job.log.tgz.1 from /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677919918/log.45006595._041844.job.log.tgz.1 to /scratch/b
[2025-06-06 12:48:16] 2025-06-06 10:47:09,912 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677919918/log.45006595._041844.job.log.tgz.1 /scratch/boinc/var/slot72/slots/0/lo
[2025-06-06 12:48:16] 2025-06-06 10:47:09,932 | INFO     | adding to output.list: log.45006595._041844.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/14/log.45006595._041844.job.log.tg
[2025-06-06 12:48:16] 2025-06-06 10:47:09,932 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 12:48:16] 2025-06-06 10:47:09,932 | INFO     | summary of transferred files:
[2025-06-06 12:48:16] 2025-06-06 10:47:09,932 | INFO     |  -- lfn=log.45006595._041844.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 12:48:16] 2025-06-06 10:47:09,933 | INFO     | stage-out finished correctly
[2025-06-06 12:48:16] 2025-06-06 10:47:12,220 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 12:48:16] 2025-06-06 10:47:12,952 | WARNING  | process 3956536 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 12:48:16] 2025-06-06 10:47:12,953 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677919918/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:48:16] 2025-06-06 10:47:12,999 | INFO     | job 6677919918 has state=finished
[2025-06-06 12:48:16] 2025-06-06 10:47:12,999 | INFO     | preparing for final server update for job 6677919918 in state='finished'
[2025-06-06 12:48:16] 2025-06-06 10:47:13,000 | INFO     | this job has now completed (state=finished)
[2025-06-06 12:48:16] 2025-06-06 10:47:13,000 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 12:48:16] 2025-06-06 10:47:13,000 | INFO     | log transfer has been attempted: DONE
[2025-06-06 12:48:16] 2025-06-06 10:47:13,001 | INFO     | job 6677919918 has finished - writing final server update
[2025-06-06 12:48:16] 2025-06-06 10:47:13,001 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2357181/.job.ad'
[2025-06-06 12:48:16] 2025-06-06 10:47:13,001 | INFO     | total number of processed events: 400 (read)
[2025-06-06 12:48:16] 2025-06-06 10:47:13,011 | INFO     | executing command: lscpu
[2025-06-06 12:48:16] 2025-06-06 10:47:13,097 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 12:48:16] 2025-06-06 10:47:13,361 | INFO     | number of running child processes to parent process 3956536: 1
[2025-06-06 12:48:16] 2025-06-06 10:47:13,361 | INFO     | maximum number of monitored processes: 6
[2025-06-06 12:48:16] 2025-06-06 10:47:14,785 | INFO     | PID=3949176 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 12:48:16] 2025-06-06 10:47:14,786 | INFO     | .. there are 6 such processes running
[2025-06-06 12:48:16] 2025-06-06 10:47:15,864 | INFO     | monitor loop #373: job 0:6677919918 is in state 'finished'
[2025-06-06 12:48:16] 2025-06-06 10:47:15,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,143 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 12:48:16] 2025-06-06 10:47:17,143 | INFO     | using path: /scratch/boinc/var/slot72/slots/0/PanDA_Pilot-6677919918/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,144 | INFO     | extracted standard info from prmon json
[2025-06-06 12:48:16] 2025-06-06 10:47:17,144 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 12:48:16] 2025-06-06 10:47:17,144 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 12:48:16] 2025-06-06 10:47:17,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 12:48:16] 2025-06-06 10:47:17,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 12:48:16] 2025-06-06 10:47:17,146 | INFO     | fitting pss+swap vs Time
[2025-06-06 12:48:16] 2025-06-06 10:47:17,146 | INFO     | sum of square deviations: 141539398.0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | sum of deviations: -1823917506.9999995
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | mean x: 1749204337.0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | mean y: 2366702.896103896
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | -- intersect: 22543118314.504814
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | intersect: 22543118314.504814
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | chi2: 0.005482883456835489
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | -- intersect: 22543118314.504814
[2025-06-06 12:48:16] 2025-06-06 10:47:17,147 | INFO     | current memory leak: -12.89 B/s (using 77 data points, chi2=0.01)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | ..............................
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . Timing measurements:
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . get job = 0 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . initial setup = 1 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . payload setup = 6 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . stage-in = 0 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . payload execution = 5116 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . stage-out = 0 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | . log creation = 0 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,148 | INFO     | ..............................
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | 
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | job summary report
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | --------------------------------------------------
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | PanDA job id: 6677919918
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | task id: 45006595
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | errors: (none)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,233 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | pilot state: finished 
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | transexitcode: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | exeerrorcode: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | exeerrordiag: 
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | exitcode: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | exitmsg: OK
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | cpuconsumptiontime: 19660 s
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | nevents: 400
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | neventsw: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | pid: 3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | pgrp: 3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | corecount: 4
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | event service: False
[2025-06-06 12:48:16] 2025-06-06 10:47:17,234 | INFO     | sizes: {0: 2397353, 5: 2397559, 11: 2397615, 5126: 2423889, 5127: 2432852, 5130: 2432908, 5134: 2433206}
[2025-06-06 12:48:16] 2025-06-06 10:47:17,235 | INFO     | --------------------------------------------------
[2025-06-06 12:48:16] 2025-06-06 10:47:17,235 | INFO     | 
[2025-06-06 12:48:16] 2025-06-06 10:47:17,235 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2025-06-06 12:48:16] 2025-06-06 10:47:17,257 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,257 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,257 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,259 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 12:48:16] 2025-06-06 10:47:17,259 | INFO     | job 6677919918 has completed (purged errors)
[2025-06-06 12:48:16] 2025-06-06 10:47:17,259 | INFO     | overall cleanup function is called
[2025-06-06 12:48:16] 2025-06-06 10:47:18,267 | INFO     | --- collectZombieJob: --- 10, [3956536]
[2025-06-06 12:48:16] 2025-06-06 10:47:18,268 | INFO     | zombie collector waiting for pid 3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:18,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 12:48:16] 2025-06-06 10:47:18,268 | INFO     | collected zombie processes
[2025-06-06 12:48:16] 2025-06-06 10:47:18,268 | INFO     | will attempt to kill all subprocesses of pid=3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:18,659 | INFO     | process IDs to be killed: [3956536] (in reverse order)
[2025-06-06 12:48:16] 2025-06-06 10:47:18,793 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 12:48:16] 2025-06-06 10:47:18,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 12:48:16] 2025-06-06 10:47:18,811 | INFO     | did not find any defunct processes belonging to 3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:18,824 | INFO     | did not find any defunct processes belonging to 3956536
[2025-06-06 12:48:16] 2025-06-06 10:47:18,824 | INFO     | ready for new job
[2025-06-06 12:48:16] 2025-06-06 10:47:18,825 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 12:48:16] 2025-06-06 10:47:18,826 | INFO     | **************************************
[2025-06-06 12:48:16] 2025-06-06 10:47:18,826 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 12:48:16] 2025-06-06 10:47:18,826 | INFO     | **************************************
[2025-06-06 12:48:16] 2025-06-06 10:47:18,826 | INFO     | 
[2025-06-06 12:48:16] 2025-06-06 10:47:18,833 | INFO     | architecture information:
[2025-06-06 12:48:16] 2025-06-06 10:47:18,833 | INFO     | executing command: cat /etc/os-release
[2025-06-06 12:48:16] 2025-06-06 10:47:18,850 | INFO     | cat /etc/os-release:
[2025-06-06 12:48:16] NAME="CentOS Linux"
[2025-06-06 12:48:16] VERSION="7 (Core)"
[2025-06-06 12:48:16] ID="centos"
[2025-06-06 12:48:16] ID_LIKE="rhel fedora"
[2025-06-06 12:48:16] VERSION_ID="7"
[2025-06-06 12:48:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 12:48:16] ANSI_COLOR="0;31"
[2025-06-06 12:48:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 12:48:16] HOME_URL="https://www.centos.org/"
[2025-06-06 12:48:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 12:48:16] 
[2025-06-06 12:48:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 12:48:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 12:48:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 12:48:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 12:48:16] 
[2025-06-06 12:48:16] 2025-06-06 10:47:18,851 | INFO     | **************************************
[2025-06-06 12:48:16] 2025-06-06 10:47:19,354 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-06-06 12:48:16] 2025-06-06 10:47:19,374 | INFO     | sufficient remaining disk space (3352938151936 B)
[2025-06-06 12:48:16] 2025-06-06 10:47:19,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 12:48:16] 2025-06-06 10:47:19,374 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 12:48:16] 2025-06-06 10:47:19,374 | INFO     | update_server=False
[2025-06-06 12:48:16] 2025-06-06 10:47:19,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 12:48:16] 2025-06-06 10:47:19,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:48:16] 2025-06-06 10:47:19,375 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 12:48:16] 2025-06-06 10:47:19,375 | INFO     | aborting loop
[2025-06-06 12:48:16] 2025-06-06 10:47:19,376 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 12:48:16] 2025-06-06 10:47:19,376 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 12:48:16] 2025-06-06 10:47:19,376 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 12:48:16] 2025-06-06 10:47:19,616 | INFO     | all payload control threads have been joined
[2025-06-06 12:48:16] 2025-06-06 10:47:20,332 | INFO     | all data control threads have been joined
[2025-06-06 12:48:16] 2025-06-06 10:47:20,380 | INFO     | [job] retrieve thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:20,381 | INFO     | [job] job monitor thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:20,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 12:48:16] 2025-06-06 10:47:20,533 | INFO     | all job control threads have been joined
[2025-06-06 12:48:16] 2025-06-06 10:47:20,589 | INFO     | [payload] failed_post thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:20,622 | INFO     | [payload] control thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:20,736 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,090 | INFO     | [job] validate thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,299 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,340 | INFO     | [data] control thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,527 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,539 | INFO     | [job] control thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,587 | INFO     | [payload] validate_post thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:21,722 | INFO     | [data] copytool_in thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:22,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 12:48:16] 2025-06-06 10:47:22,515 | INFO     | [data] copytool_out thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:22,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 12:48:16] 2025-06-06 10:47:23,246 | INFO     | [job] queue monitor thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:26,821 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:29,818 | INFO     | job.realtimelogging is not enabled
[2025-06-06 12:48:16] 2025-06-06 10:47:30,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 12:48:16] 2025-06-06 10:47:32,324 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22431418033984)>', '<ExcThread(monitor, started 22431181801216)>']
[2025-06-06 12:48:16] 2025-06-06 10:47:32,438 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 12:48:16] 2025-06-06 10:47:32,438 | INFO     | [monitor] control thread has ended
[2025-06-06 12:48:16] 2025-06-06 10:47:37,349 | INFO     | all workflow threads have been joined
[2025-06-06 12:48:16] 2025-06-06 10:47:37,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 12:48:16] 2025-06-06 10:47:37,349 | INFO     | traces error code: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:37,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 12:48:16] 2025-06-06 10:47:37,465 [wrapper] ==== pilot stdout END ====
[2025-06-06 12:48:16] 2025-06-06 10:47:37,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 12:48:16] 2025-06-06 10:47:37,472 [wrapper] pilotpid: 3949176
[2025-06-06 12:48:16] 2025-06-06 10:47:37,476 [wrapper] Pilot exit status: 0
[2025-06-06 12:48:16] 2025-06-06 10:47:37,487 [wrapper] pandaids: 6677919918
[2025-06-06 12:48:16] 2025-06-06 10:47:37,579 [wrapper] cleanup supervisor_pilot    6040 3949177
[2025-06-06 12:48:16] 2025-06-06 10:47:37,582 [wrapper] Test setup, not cleaning
[2025-06-06 12:48:16] 2025-06-06 10:47:37,585 [wrapper] apfmon messages muted
[2025-06-06 12:48:16] 2025-06-06 10:47:37,588 [wrapper] ==== wrapper stdout END ====
[2025-06-06 12:48:16] 2025-06-06 10:47:37,591 [wrapper] ==== wrapper stderr END ====
[2025-06-06 12:48:16]  *** Error codes and diagnostics ***
[2025-06-06 12:48:16]     "exeErrorCode": 0,
[2025-06-06 12:48:16]     "exeErrorDiag": "",
[2025-06-06 12:48:16]     "pilotErrorCode": 0,
[2025-06-06 12:48:16]     "pilotErrorDiag": "",
[2025-06-06 12:48:16]  *** Listing of results directory ***
[2025-06-06 12:48:16] total 388960
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc      5111 Jun  3 20:06 queuedata.json
[2025-06-06 12:48:16] -rwx------ 1 boinc boinc     37140 Jun  3 20:10 runpilot2-wrapper.sh
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc       100 Jun  6 11:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 12:48:16] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 11:21 run_atlas
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc       105 Jun  6 11:21 job.xml
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc      6686 Jun  6 11:21 init_data.xml
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc 214268062 Jun  6 11:21 EVNT.45006593._001678.pool.root.1
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 11:21 start_atlas.sh
[2025-06-06 12:48:16] drwxrwx--x 2 boinc boinc      4096 Jun  6 11:21 shared
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc    508884 Jun  6 11:21 input.tar.gz
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc         0 Jun  6 11:21 boinc_lockfile
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc      2525 Jun  6 11:21 pandaJob.out
[2025-06-06 12:48:16] -rw------- 1 boinc boinc    987967 Jun  6 11:21 agis_schedconf.cvmfs.json
[2025-06-06 12:48:16] -rw------- 1 boinc boinc   1598969 Jun  6 11:21 agis_ddmendpoints.agis.ALL.json
[2025-06-06 12:48:16] drwx------ 4 boinc boinc      4096 Jun  6 11:21 pilot3
[2025-06-06 12:48:16] -rw------- 1 boinc boinc 178672813 Jun  6 12:46 HITS.45006595._041844.pool.root.1
[2025-06-06 12:48:16] -rw------- 1 boinc boinc        95 Jun  6 12:46 pilot_heartbeat.json
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc       528 Jun  6 12:47 boinc_task_state.xml
[2025-06-06 12:48:16] -rw------- 1 boinc boinc      1024 Jun  6 12:47 memory_monitor_summary.json
[2025-06-06 12:48:16] -rw------- 1 boinc boinc    258917 Jun  6 12:47 log.45006595._041844.job.log.tgz.1
[2025-06-06 12:48:16] -rw------- 1 boinc boinc      7698 Jun  6 12:47 heartbeat.json
[2025-06-06 12:48:16] -rw------- 1 boinc boinc      4559 Jun  6 12:47 pilotlog.txt
[2025-06-06 12:48:16] -rw------- 1 boinc boinc    498352 Jun  6 12:47 log.45006595._041844.job.log.1
[2025-06-06 12:48:16] -rw------- 1 boinc boinc       357 Jun  6 12:47 output.list
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc       620 Jun  6 12:47 runtime_log
[2025-06-06 12:48:16] -rw------- 1 boinc boinc    778240 Jun  6 12:47 result.tar.gz
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc      9025 Jun  6 12:47 runtime_log.err
[2025-06-06 12:48:16] -rw------- 1 boinc boinc       661 Jun  6 12:47 6YzKDmYGlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEclKDm5x8aHm.diag
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc        26 Jun  6 12:48 wrapper_checkpoint.txt
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc      8192 Jun  6 12:48 boinc_mmap_file
[2025-06-06 12:48:16] -rw-r--r-- 1 boinc boinc     21526 Jun  6 12:48 stderr.txt
[2025-06-06 12:48:16] HITS file was successfully produced:
[2025-06-06 12:48:16] -rw------- 1 boinc boinc 178672813 Jun  6 12:46 shared/HITS.pool.root.1
[2025-06-06 12:48:16]  *** Contents of shared directory: ***
[2025-06-06 12:48:16] total 385020
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc 214268062 Jun  6 11:21 ATLAS.root_0
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc     15093 Jun  6 11:21 start_atlas.sh
[2025-06-06 12:48:16] -rw-r--r-- 2 boinc boinc    508884 Jun  6 11:21 input.tar.gz
[2025-06-06 12:48:16] -rw------- 1 boinc boinc 178672813 Jun  6 12:46 HITS.pool.root.1
[2025-06-06 12:48:16] -rw------- 1 boinc boinc    778240 Jun  6 12:47 result.tar.gz
12:48:17 (3945254): run_atlas exited; CPU time 19854.773836
12:48:17 (3945254): called boinc_finish(0)

</stderr_txt>
]]>

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