Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:53:45 (6393): wrapper (7.7.26015): starting
05:53:45 (6393): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:53:45] Arguments: --nthreads 8
[2025-06-04 05:53:45] Threads: 8
[2025-06-04 05:53:45] Checking for CVMFS
[2025-06-04 05:53:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:53:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:53:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:53:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:53:46] 2.11.2.0 7420 32681 96100 146767 2 14 17772536 25165825 3892 130560 0 16216996 99.788 19804229 2295 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 05:53:46] CVMFS is ok
[2025-06-04 05:53:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:53:47] Checking for apptainer binary...
[2025-06-04 05:53:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:53:47] Running /usr/bin/apptainer --version
[2025-06-04 05:53:47] apptainer version 1.3.2-1.el7
[2025-06-04 05:53:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:53:52] cg-vwn450.simple-grid.lan
[2025-06-04 05:53:52] apptainer works
[2025-06-04 05:53:52] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:53:52] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:53:52] Starting ATLAS job with PandaID=6677917711
[2025-06-04 05:53:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:49:14]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:49:14] 2025-06-04 07:48:56,920 | INFO     | extracted standard info from prmon json
[2025-06-04 09:49:14] 2025-06-04 07:48:56,920 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:49:14] 2025-06-04 07:48:56,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:49:14] 2025-06-04 07:48:56,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:49:14] 2025-06-04 07:48:56,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:49:14] 2025-06-04 07:48:56,926 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:49:14] 2025-06-04 07:48:56,932 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,934 | INFO     | sum of deviations: -31245731191.499992
[2025-06-04 09:49:14] 2025-06-04 07:48:56,935 | INFO     | mean x: 1749016432.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,935 | INFO     | mean y: 2506258.7098214286
[2025-06-04 09:49:14] 2025-06-04 07:48:56,935 | INFO     | -- intersect: 15683398072.88387
[2025-06-04 09:49:14] 2025-06-04 07:48:56,935 | INFO     | intersect: 15683398072.88387
[2025-06-04 09:49:14] 2025-06-04 07:48:56,935 | INFO     | chi2: 2.763639452141099
[2025-06-04 09:49:14] 2025-06-04 07:48:56,936 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,938 | INFO     | sum of deviations: -15663060158.000002
[2025-06-04 09:49:14] 2025-06-04 07:48:56,938 | INFO     | mean x: 1749016280.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,938 | INFO     | mean y: 2516493.6301369863
[2025-06-04 09:49:14] 2025-06-04 07:48:56,938 | INFO     | -- intersect: 8413925568.181969
[2025-06-04 09:49:14] 2025-06-04 07:48:56,938 | INFO     | intersect: 8413925568.181969
[2025-06-04 09:49:14] 2025-06-04 07:48:56,939 | INFO     | chi2: 2.0021106936940845
[2025-06-04 09:49:14] 2025-06-04 07:48:56,939 | INFO     | current chi2=2.0021106936940845 (change=27.55528612305157 %)
[2025-06-04 09:49:14] 2025-06-04 07:48:56,939 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,947 | INFO     | sum of deviations: -15070321602.50001
[2025-06-04 09:49:14] 2025-06-04 07:48:56,948 | INFO     | mean x: 1749016127.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,948 | INFO     | mean y: 2516908.2943925234
[2025-06-04 09:49:14] 2025-06-04 07:48:56,948 | INFO     | -- intersect: 8676250395.76786
[2025-06-04 09:49:14] 2025-06-04 07:48:56,948 | INFO     | intersect: 8676250395.76786
[2025-06-04 09:49:14] 2025-06-04 07:48:56,948 | INFO     | chi2: 2.0009990123243986
[2025-06-04 09:49:14] 2025-06-04 07:48:56,949 | INFO     | current chi2=2.0009990123243986 (change=0.05552546985475167 %)
[2025-06-04 09:49:14] 2025-06-04 07:48:56,949 | INFO     | right removable region: 213
[2025-06-04 09:49:14] 2025-06-04 07:48:56,949 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,951 | INFO     | sum of deviations: -69952657497.00002
[2025-06-04 09:49:14] 2025-06-04 07:48:56,951 | INFO     | mean x: 1749016585.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,951 | INFO     | mean y: 2531888.634703196
[2025-06-04 09:49:14] 2025-06-04 07:48:56,951 | INFO     | -- intersect: 37568659754.53698
[2025-06-04 09:49:14] 2025-06-04 07:48:56,952 | INFO     | intersect: 37568659754.53698
[2025-06-04 09:49:14] 2025-06-04 07:48:56,952 | INFO     | chi2: 1.0218195991991719
[2025-06-04 09:49:14] 2025-06-04 07:48:56,952 | INFO     | current chi2=1.0218195991991719 (change=63.0263058226525 %)
[2025-06-04 09:49:14] 2025-06-04 07:48:56,953 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,954 | INFO     | sum of deviations: -68391432799.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,955 | INFO     | mean x: 1749016737.5
[2025-06-04 09:49:14] 2025-06-04 07:48:56,955 | INFO     | mean y: 2530759.976635514
[2025-06-04 09:49:14] 2025-06-04 07:48:56,955 | INFO     | -- intersect: 39365278514.67316
[2025-06-04 09:49:14] 2025-06-04 07:48:56,955 | INFO     | intersect: 39365278514.67316
[2025-06-04 09:49:14] 2025-06-04 07:48:56,955 | INFO     | chi2: 1.0049314537550909
[2025-06-04 09:49:14] 2025-06-04 07:48:56,956 | INFO     | current chi2=1.0049314537550909 (change=1.6527521548144817 %)
[2025-06-04 09:49:14] 2025-06-04 07:48:56,956 | INFO     | left removable region: 20
[2025-06-04 09:49:14] 2025-06-04 07:48:56,956 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | sum of deviations: -39450760702.000015
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | mean x: 1749016707.0
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | mean y: 2533636.5077720205
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | -- intersect: 30956096723.899773
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | intersect: 30956096723.899773
[2025-06-04 09:49:14] 2025-06-04 07:48:56,958 | INFO     | chi2: 0.20044369759978894
[2025-06-04 09:49:14] 2025-06-04 07:48:56,959 | INFO     | -- intersect: 30956096723.899773
[2025-06-04 09:49:14] 2025-06-04 07:48:56,959 | INFO     | current memory leak: -17.70 B/s (using 193 data points, chi2=0.20)
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | ..............................
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . Timing measurements:
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . get job = 0 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . initial setup = 7 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . payload setup = 15 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . stage-in = 0 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . payload execution = 13631 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,960 | INFO     | . stage-out = 3 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,961 | INFO     | . log creation = 1 s
[2025-06-04 09:49:14] 2025-06-04 07:48:56,961 | INFO     | ..............................
[2025-06-04 09:49:14] 2025-06-04 07:48:57,089 | INFO     | 
[2025-06-04 09:49:14] 2025-06-04 07:48:57,089 | INFO     | job summary report
[2025-06-04 09:49:14] 2025-06-04 07:48:57,089 | INFO     | --------------------------------------------------
[2025-06-04 09:49:14] 2025-06-04 07:48:57,089 | INFO     | PanDA job id: 6677917711
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | task id: 45006595
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | errors: (none)
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | pilot state: finished 
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | transexitcode: 0
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | exeerrorcode: 0
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | exeerrordiag: 
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | exitcode: 0
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | exitmsg: OK
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | cpuconsumptiontime: 51189 s
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | nevents: 400
[2025-06-04 09:49:14] 2025-06-04 07:48:57,090 | INFO     | neventsw: 0
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | pid: 18508
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | pgrp: 18508
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | corecount: 8
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | event service: False
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | sizes: {0: 2404958, 1: 2405213, 2: 2405213, 12: 2405241, 23: 2405269, 34: 2405297, 44: 2405453, 55: 2405481, 66: 2405509, 77: 2405537, 87: 2405593, 91: 2406107, 98
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | --------------------------------------------------
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | 
[2025-06-04 09:49:14] 2025-06-04 07:48:57,091 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 09:49:14] 2025-06-04 07:48:57,510 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,512 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:49:14] 2025-06-04 07:48:57,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,513 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:49:14] 2025-06-04 07:48:57,513 | INFO     | job 6677917711 has completed (purged errors)
[2025-06-04 09:49:14] 2025-06-04 07:48:57,513 | INFO     | overall cleanup function is called
[2025-06-04 09:49:14] 2025-06-04 07:48:58,522 | INFO     | --- collectZombieJob: --- 10, [18508]
[2025-06-04 09:49:14] 2025-06-04 07:48:58,522 | INFO     | zombie collector waiting for pid 18508
[2025-06-04 09:49:14] 2025-06-04 07:48:58,522 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:49:14] 2025-06-04 07:48:58,522 | INFO     | collected zombie processes
[2025-06-04 09:49:14] 2025-06-04 07:48:58,522 | INFO     | will attempt to kill all subprocesses of pid=18508
[2025-06-04 09:49:14] 2025-06-04 07:48:58,625 | INFO     | process IDs to be killed: [18508] (in reverse order)
[2025-06-04 09:49:14] 2025-06-04 07:48:58,840 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:49:14] 2025-06-04 07:48:58,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:49:14] 2025-06-04 07:48:58,844 | INFO     | did not find any defunct processes belonging to 18508
[2025-06-04 09:49:14] 2025-06-04 07:48:58,850 | INFO     | did not find any defunct processes belonging to 18508
[2025-06-04 09:49:14] 2025-06-04 07:48:58,850 | INFO     | ready for new job
[2025-06-04 09:49:14] 2025-06-04 07:48:58,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:49:14] 2025-06-04 07:48:58,853 | INFO     | **************************************
[2025-06-04 09:49:14] 2025-06-04 07:48:58,853 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:49:14] 2025-06-04 07:48:58,853 | INFO     | **************************************
[2025-06-04 09:49:14] 2025-06-04 07:48:58,853 | INFO     | 
[2025-06-04 09:49:14] 2025-06-04 07:48:58,856 | INFO     | pilot is running in a VM
[2025-06-04 09:49:14] 2025-06-04 07:48:58,856 | INFO     | architecture information:
[2025-06-04 09:49:14] 2025-06-04 07:48:58,862 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:49:14] 2025-06-04 07:48:59,073 | INFO     | cat /etc/os-release:
[2025-06-04 09:49:14] NAME="CentOS Linux"
[2025-06-04 09:49:14] VERSION="7 (Core)"
[2025-06-04 09:49:14] ID="centos"
[2025-06-04 09:49:14] ID_LIKE="rhel fedora"
[2025-06-04 09:49:14] VERSION_ID="7"
[2025-06-04 09:49:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:49:14] ANSI_COLOR="0;31"
[2025-06-04 09:49:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:49:14] HOME_URL="https://www.centos.org/"
[2025-06-04 09:49:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:49:14] 
[2025-06-04 09:49:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:49:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:49:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:49:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:49:14] 
[2025-06-04 09:49:14] 2025-06-04 07:48:59,074 | INFO     | **************************************
[2025-06-04 09:49:14] 2025-06-04 07:48:59,577 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 09:49:14] 2025-06-04 07:48:59,809 | INFO     | sufficient remaining disk space (497297653760 B)
[2025-06-04 09:49:14] 2025-06-04 07:48:59,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:49:14] 2025-06-04 07:48:59,809 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:49:14] 2025-06-04 07:48:59,809 | INFO     | update_server=False
[2025-06-04 09:49:14] 2025-06-04 07:48:59,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:49:14] 2025-06-04 07:48:59,811 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:14] 2025-06-04 07:48:59,811 | INFO     | aborting loop
[2025-06-04 09:49:14] 2025-06-04 07:48:59,811 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:49:14] 2025-06-04 07:48:59,811 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:49:14] 2025-06-04 07:48:59,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:49:14] 2025-06-04 07:48:59,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:49:14] 2025-06-04 07:48:59,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:49:14] 2025-06-04 07:49:00,816 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:00,817 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:00,821 | INFO     | all data control threads have been joined
[2025-06-04 09:49:14] 2025-06-04 07:49:00,926 | INFO     | all payload control threads have been joined
[2025-06-04 09:49:14] 2025-06-04 07:49:00,932 | INFO     | all job control threads have been joined
[2025-06-04 09:49:14] 2025-06-04 07:49:01,088 | INFO     | [job] validate thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,357 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,487 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,507 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,765 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,827 | INFO     | [data] control thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,839 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,846 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,932 | INFO     | [payload] control thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:01,938 | INFO     | [job] control thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:02,004 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:02,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:14] 2025-06-04 07:49:02,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:49:14] 2025-06-04 07:49:03,110 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:06,907 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:49:14] 2025-06-04 07:49:07,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545866901312)>', '<ExcThread(monitor, started 140545640003328)>']
[2025-06-04 09:49:14] 2025-06-04 07:49:07,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:49:14] 2025-06-04 07:49:07,860 | INFO     | [monitor] control thread has ended
[2025-06-04 09:49:14] 2025-06-04 07:49:12,186 | INFO     | all workflow threads have been joined
[2025-06-04 09:49:14] 2025-06-04 07:49:12,186 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:49:14] 2025-06-04 07:49:12,186 | INFO     | traces error code: 0
[2025-06-04 09:49:14] 2025-06-04 07:49:12,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:49:14] 2025-06-04 07:49:12,420 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:49:14] 2025-06-04 07:49:12,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:49:14] 2025-06-04 07:49:12,449 [wrapper] pilotpid: 11870
[2025-06-04 09:49:14] 2025-06-04 07:49:12,460 [wrapper] Pilot exit status: 0
[2025-06-04 09:49:14] 2025-06-04 07:49:12,537 [wrapper] pandaids: 6677917711
[2025-06-04 09:49:14] 2025-06-04 07:49:12,603 [wrapper] cleanup supervisor_pilot 19523 11871
[2025-06-04 09:49:14] 2025-06-04 07:49:12,609 [wrapper] Test setup, not cleaning
[2025-06-04 09:49:14] 2025-06-04 07:49:12,620 [wrapper] apfmon messages muted
[2025-06-04 09:49:14] 2025-06-04 07:49:12,632 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:49:14] 2025-06-04 07:49:12,643 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:49:14]  *** Error codes and diagnostics ***
[2025-06-04 09:49:14]     "exeErrorCode": 0,
[2025-06-04 09:49:14]     "exeErrorDiag": "",
[2025-06-04 09:49:14]     "pilotErrorCode": 0,
[2025-06-04 09:49:14]     "pilotErrorDiag": "",
[2025-06-04 09:49:14]  *** Listing of results directory ***
[2025-06-04 09:49:14] total 390992
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:52 queuedata.json
[2025-06-04 09:49:14] -rwx------. 1 boinc boinc     37140 Jun  3 19:53 runpilot2-wrapper.sh
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc       100 Jun  4 05:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:49:14] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 05:53 run_atlas
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc       105 Jun  4 05:53 job.xml
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc 214330858 Jun  4 05:53 EVNT.45006593._001650.pool.root.1
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc      6393 Jun  4 05:53 init_data.xml
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:53 start_atlas.sh
[2025-06-04 09:49:14] drwxrwx--x. 2 boinc boinc        68 Jun  4 05:53 shared
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:53 input.tar.gz
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc         0 Jun  4 05:53 boinc_lockfile
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc      2525 Jun  4 05:53 pandaJob.out
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc    986077 Jun  4 05:57 agis_schedconf.cvmfs.json
[2025-06-04 09:49:14] drwx------. 4 boinc boinc      4096 Jun  4 05:57 pilot3
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc 179031261 Jun  4 09:46 HITS.45006595._041219.pool.root.1
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc       531 Jun  4 09:46 boinc_task_state.xml
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc      1019 Jun  4 09:47 memory_monitor_summary.json
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc   1603667 Jun  4 09:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc    397359 Jun  4 09:47 log.45006595._041219.job.log.tgz.1
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc        95 Jun  4 09:48 pilot_heartbeat.json
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc      7695 Jun  4 09:48 heartbeat.json
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc      4540 Jun  4 09:49 pilotlog.txt
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc   1198252 Jun  4 09:49 log.45006595._041219.job.log.1
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc      8192 Jun  4 09:49 boinc_mmap_file
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc        28 Jun  4 09:49 wrapper_checkpoint.txt
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc       357 Jun  4 09:49 output.list
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc       620 Jun  4 09:49 runtime_log
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc   1617920 Jun  4 09:49 result.tar.gz
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc      8673 Jun  4 09:49 runtime_log.err
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc       657 Jun  4 09:49 2WANDmG0kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGUlKDmI9u5Mn.diag
[2025-06-04 09:49:14] -rw-r--r--. 1 boinc boinc     20515 Jun  4 09:49 stderr.txt
[2025-06-04 09:49:14] HITS file was successfully produced:
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc 179031261 Jun  4 09:46 shared/HITS.pool.root.1
[2025-06-04 09:49:14]  *** Contents of shared directory: ***
[2025-06-04 09:49:14] total 386240
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc 214330858 Jun  4 05:53 ATLAS.root_0
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:53 start_atlas.sh
[2025-06-04 09:49:14] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:53 input.tar.gz
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc 179031261 Jun  4 09:46 HITS.pool.root.1
[2025-06-04 09:49:14] -rw-------. 1 boinc boinc   1617920 Jun  4 09:49 result.tar.gz
09:49:15 (6393): run_atlas exited; CPU time 51373.859448
09:49:15 (6393): called boinc_finish(0)

</stderr_txt>
]]>

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