Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:00:31 (26824): wrapper (7.7.26015): starting
10:00:31 (26824): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:00:31] Arguments: --nthreads 8
[2025-06-04 10:00:31] Threads: 8
[2025-06-04 10:00:31] Checking for CVMFS
[2025-06-04 10:00:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:00:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:00:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:00:36] 2.11.2.0 16537 32940 89348 146772 3 69 13024794 25165825 4293 130560 0 16695501 99.778 19502239 2123 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 10:00:36] CVMFS is ok
[2025-06-04 10:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:00:36] Checking for apptainer binary...
[2025-06-04 10:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:00:36] Running /usr/bin/apptainer --version
[2025-06-04 10:00:36] apptainer version 1.3.2-1.el7
[2025-06-04 10:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:11:41] cg-vwn365.simple-grid.lan
[2025-06-04 10:11:41] apptainer works
[2025-06-04 10:11:41] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:11:41] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:11:41] Starting ATLAS job with PandaID=6677919096
[2025-06-04 10:11:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:32:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:32:35] 2025-06-04 12:19:19,145 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:32:35] 2025-06-04 12:19:19,145 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:32:35] 2025-06-04 12:19:19,145 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:32:35] 2025-06-04 12:19:19,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:32:35] 2025-06-04 12:19:19,150 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:32:35] 2025-06-04 12:19:19,151 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,153 | INFO     | sum of deviations: 33429299513.500008
[2025-06-04 16:32:35] 2025-06-04 12:19:19,153 | INFO     | mean x: 1749032390.5
[2025-06-04 16:32:35] 2025-06-04 12:19:19,153 | INFO     | mean y: 2471348.3405172415
[2025-06-04 16:32:35] 2025-06-04 12:19:19,153 | INFO     | -- intersect: -15098010960.932352
[2025-06-04 16:32:35] 2025-06-04 12:19:19,153 | INFO     | intersect: -15098010960.932352
[2025-06-04 16:32:35] 2025-06-04 12:19:19,154 | INFO     | chi2: 6.514199056529337
[2025-06-04 16:32:35] 2025-06-04 12:19:19,154 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,156 | INFO     | sum of deviations: 48272287353.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,156 | INFO     | mean x: 1749032238.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,156 | INFO     | mean y: 2480421.6740088104
[2025-06-04 16:32:35] 2025-06-04 12:19:19,156 | INFO     | -- intersect: -23275651505.85281
[2025-06-04 16:32:35] 2025-06-04 12:19:19,157 | INFO     | intersect: -23275651505.85281
[2025-06-04 16:32:35] 2025-06-04 12:19:19,157 | INFO     | chi2: 5.804213182190457
[2025-06-04 16:32:35] 2025-06-04 12:19:19,157 | INFO     | current chi2=5.804213182190457 (change=10.899050952814287 %)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,157 | INFO     | right removable region: 226
[2025-06-04 16:32:35] 2025-06-04 12:19:19,158 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,159 | INFO     | sum of deviations: -45265153700.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,159 | INFO     | mean x: 1749032543.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,159 | INFO     | mean y: 2520283.4493392073
[2025-06-04 16:32:35] 2025-06-04 12:19:19,160 | INFO     | -- intersect: 21830539237.419838
[2025-06-04 16:32:35] 2025-06-04 12:19:19,160 | INFO     | intersect: 21830539237.419838
[2025-06-04 16:32:35] 2025-06-04 12:19:19,160 | INFO     | chi2: 1.974861497480153
[2025-06-04 16:32:35] 2025-06-04 12:19:19,160 | INFO     | current chi2=1.974861497480153 (change=69.6837403901451 %)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,161 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 16:32:35] 2025-06-04 12:19:19,162 | INFO     | sum of deviations: -76997506810.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,162 | INFO     | mean x: 1749032695.5
[2025-06-04 16:32:35] 2025-06-04 12:19:19,162 | INFO     | mean y: 2540787.3243243243
[2025-06-04 16:32:35] 2025-06-04 12:19:19,163 | INFO     | -- intersect: 39698477611.72784
[2025-06-04 16:32:35] 2025-06-04 12:19:19,163 | INFO     | intersect: 39698477611.72784
[2025-06-04 16:32:35] 2025-06-04 12:19:19,163 | INFO     | chi2: 0.999984734478329
[2025-06-04 16:32:35] 2025-06-04 12:19:19,163 | INFO     | current chi2=0.999984734478329 (change=49.364310572955574 %)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,163 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,165 | INFO     | sum of deviations: -73936087244.00002
[2025-06-04 16:32:35] 2025-06-04 12:19:19,165 | INFO     | mean x: 1749032848.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,165 | INFO     | mean y: 2538676.5576036866
[2025-06-04 16:32:35] 2025-06-04 12:19:19,165 | INFO     | -- intersect: 40816244227.69954
[2025-06-04 16:32:35] 2025-06-04 12:19:19,166 | INFO     | intersect: 40816244227.69954
[2025-06-04 16:32:35] 2025-06-04 12:19:19,166 | INFO     | chi2: 0.9902446932971589
[2025-06-04 16:32:35] 2025-06-04 12:19:19,166 | INFO     | current chi2=0.9902446932971589 (change=0.9740189870249655 %)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,166 | INFO     | left removable region: 30
[2025-06-04 16:32:35] 2025-06-04 12:19:19,166 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,168 | INFO     | sum of deviations: -38594906972.999985
[2025-06-04 16:32:35] 2025-06-04 12:19:19,168 | INFO     | mean x: 1749033122.5
[2025-06-04 16:32:35] 2025-06-04 12:19:19,168 | INFO     | mean y: 2535205.1938775512
[2025-06-04 16:32:35] 2025-06-04 12:19:19,168 | INFO     | -- intersect: 28915504811.050106
[2025-06-04 16:32:35] 2025-06-04 12:19:19,168 | INFO     | intersect: 28915504811.050106
[2025-06-04 16:32:35] 2025-06-04 12:19:19,169 | INFO     | chi2: 0.1819350105428178
[2025-06-04 16:32:35] 2025-06-04 12:19:19,169 | INFO     | -- intersect: 28915504811.050106
[2025-06-04 16:32:35] 2025-06-04 12:19:19,169 | INFO     | current memory leak: -16.53 B/s (using 196 data points, chi2=0.18)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | ..............................
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . Timing measurements:
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . get job = 0 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . initial setup = 8 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . payload setup = 143 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . stage-in = 0 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . payload execution = 14249 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,170 | INFO     | . stage-out = 3 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,171 | INFO     | . log creation = 1 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,171 | INFO     | ..............................
[2025-06-04 16:32:35] 2025-06-04 12:19:19,627 | INFO     | 
[2025-06-04 16:32:35] 2025-06-04 12:19:19,627 | INFO     | job summary report
[2025-06-04 16:32:35] 2025-06-04 12:19:19,627 | INFO     | --------------------------------------------------
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | PanDA job id: 6677919096
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | task id: 45006595
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | errors: (none)
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | pilot state: finished 
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | transexitcode: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | exeerrorcode: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | exeerrordiag: 
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | exitcode: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | exitmsg: OK
[2025-06-04 16:32:35] 2025-06-04 12:19:19,628 | INFO     | cpuconsumptiontime: 51642 s
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | nevents: 400
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | neventsw: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | pid: 15474
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | pgrp: 15474
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | corecount: 8
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | event service: False
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | sizes: {0: 2405015, 1: 2405214, 12: 2405214, 23: 2405242, 34: 2405270, 45: 2405298, 55: 2405454, 66: 2405482, 77: 2405510, 78: 2405772, 87: 2405828, 14397: 2435968
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | --------------------------------------------------
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | 
[2025-06-04 16:32:35] 2025-06-04 12:19:19,629 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 16:32:35] 2025-06-04 12:19:20,316 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,316 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,316 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:32:35] 2025-06-04 12:19:20,318 | INFO     | job 6677919096 has completed (purged errors)
[2025-06-04 16:32:35] 2025-06-04 12:19:20,319 | INFO     | overall cleanup function is called
[2025-06-04 16:32:35] 2025-06-04 12:19:21,326 | INFO     | --- collectZombieJob: --- 10, [15474]
[2025-06-04 16:32:35] 2025-06-04 12:19:21,326 | INFO     | zombie collector waiting for pid 15474
[2025-06-04 16:32:35] 2025-06-04 12:19:21,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:32:35] 2025-06-04 12:19:21,327 | INFO     | collected zombie processes
[2025-06-04 16:32:35] 2025-06-04 12:19:21,327 | INFO     | will attempt to kill all subprocesses of pid=15474
[2025-06-04 16:32:35] 2025-06-04 12:19:21,470 | INFO     | process IDs to be killed: [15474] (in reverse order)
[2025-06-04 16:32:35] 2025-06-04 12:19:22,092 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:32:35] 2025-06-04 12:19:22,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:32:35] 2025-06-04 12:19:22,096 | INFO     | did not find any defunct processes belonging to 15474
[2025-06-04 16:32:35] 2025-06-04 12:19:22,099 | INFO     | did not find any defunct processes belonging to 15474
[2025-06-04 16:32:35] 2025-06-04 12:19:22,100 | INFO     | ready for new job
[2025-06-04 16:32:35] 2025-06-04 12:19:22,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:32:35] 2025-06-04 12:19:22,102 | INFO     | **************************************
[2025-06-04 16:32:35] 2025-06-04 12:19:22,108 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:32:35] 2025-06-04 12:19:22,109 | INFO     | **************************************
[2025-06-04 16:32:35] 2025-06-04 12:19:22,109 | INFO     | 
[2025-06-04 16:32:35] 2025-06-04 12:19:22,109 | INFO     | pilot is running in a VM
[2025-06-04 16:32:35] 2025-06-04 12:19:22,109 | INFO     | architecture information:
[2025-06-04 16:32:35] 2025-06-04 12:19:22,125 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:32:35] 2025-06-04 12:19:22,341 | INFO     | cat /etc/os-release:
[2025-06-04 16:32:35] NAME="CentOS Linux"
[2025-06-04 16:32:35] VERSION="7 (Core)"
[2025-06-04 16:32:35] ID="centos"
[2025-06-04 16:32:35] ID_LIKE="rhel fedora"
[2025-06-04 16:32:35] VERSION_ID="7"
[2025-06-04 16:32:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:32:35] ANSI_COLOR="0;31"
[2025-06-04 16:32:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:32:35] HOME_URL="https://www.centos.org/"
[2025-06-04 16:32:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:32:35] 
[2025-06-04 16:32:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:32:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:32:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:32:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:32:35] 
[2025-06-04 16:32:35] 2025-06-04 12:19:22,341 | INFO     | **************************************
[2025-06-04 16:32:35] 2025-06-04 12:19:22,844 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 16:32:35] 2025-06-04 12:19:22,963 | INFO     | sufficient remaining disk space (496195600384 B)
[2025-06-04 16:32:35] 2025-06-04 12:19:22,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:32:35] 2025-06-04 12:19:22,964 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:32:35] 2025-06-04 12:19:22,964 | INFO     | update_server=False
[2025-06-04 16:32:35] 2025-06-04 12:19:22,964 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:32:35] 2025-06-04 12:19:22,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:32:35] 2025-06-04 12:19:22,968 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 16:32:35] 2025-06-04 12:19:22,969 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:32:35] 2025-06-04 12:19:22,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:32:35] 2025-06-04 12:19:22,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:32:35] 2025-06-04 12:19:23,189 | INFO     | all payload control threads have been joined
[2025-06-04 16:32:35] 2025-06-04 12:19:23,377 | INFO     | all data control threads have been joined
[2025-06-04 16:32:35] 2025-06-04 12:19:23,441 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:32:35] 2025-06-04 12:19:23,441 | INFO     | aborting loop
[2025-06-04 16:32:35] 2025-06-04 12:19:23,970 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,195 | INFO     | [payload] control thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,290 | INFO     | all job control threads have been joined
[2025-06-04 16:32:35] 2025-06-04 12:19:24,360 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:32:35] 2025-06-04 12:19:24,383 | INFO     | [data] control thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,392 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,447 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,469 | INFO     | [job] validate thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,480 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,517 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,960 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:24,972 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:25,030 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:25,153 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:25,296 | INFO     | [job] control thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:25,366 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:26,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:32:35] 2025-06-04 12:19:30,446 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:33,907 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:32:35] 2025-06-04 12:19:34,913 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:32:35] 2025-06-04 12:19:36,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608361363264)>', '<ExcThread(monitor, started 140607498483456)>']
[2025-06-04 16:32:35] 2025-06-04 12:19:37,052 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:32:35] 2025-06-04 12:19:37,052 | INFO     | [monitor] control thread has ended
[2025-06-04 16:32:35] 2025-06-04 12:19:41,582 | INFO     | all workflow threads have been joined
[2025-06-04 16:32:35] 2025-06-04 12:19:41,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:32:35] 2025-06-04 12:19:41,583 | INFO     | traces error code: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:41,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:32:35] 2025-06-04 12:19:41,963 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:32:35] 2025-06-04 12:19:42,008 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:32:35] 2025-06-04 12:19:42,047 [wrapper] pilotpid: 4857
[2025-06-04 16:32:35] 2025-06-04 12:19:42,094 [wrapper] Pilot exit status: 0
[2025-06-04 16:32:35] 2025-06-04 12:19:42,415 [wrapper] pandaids: 6677919096
[2025-06-04 16:32:35] 2025-06-04 12:19:43,304 [wrapper] cleanup supervisor_pilot 24294 4858
[2025-06-04 16:32:35] 2025-06-04 12:19:43,348 [wrapper] Test setup, not cleaning
[2025-06-04 16:32:35] 2025-06-04 12:19:43,394 [wrapper] apfmon messages muted
[2025-06-04 16:32:35] 2025-06-04 12:19:43,473 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:32:35] 2025-06-04 12:19:43,541 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:32:35]  *** Error codes and diagnostics ***
[2025-06-04 16:32:35]     "exeErrorCode": 0,
[2025-06-04 16:32:35]     "exeErrorDiag": "",
[2025-06-04 16:32:35]     "pilotErrorCode": 0,
[2025-06-04 16:32:35]     "pilotErrorDiag": "",
[2025-06-04 16:32:35]  *** Listing of results directory ***
[2025-06-04 16:32:35] total 390280
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:58 queuedata.json
[2025-06-04 16:32:35] -rwx------. 1 boinc boinc     37140 Jun  3 19:58 runpilot2-wrapper.sh
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc       100 Jun  4 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:32:35] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 10:00 run_atlas
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc       105 Jun  4 10:00 job.xml
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc      6392 Jun  4 10:00 init_data.xml
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc 214464505 Jun  4 10:00 EVNT.45006593._001661.pool.root.1
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:00 start_atlas.sh
[2025-06-04 16:32:35] drwxrwx--x. 2 boinc boinc        68 Jun  4 10:00 shared
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc    508876 Jun  4 10:00 input.tar.gz
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc         0 Jun  4 10:00 boinc_lockfile
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc      2526 Jun  4 10:11 pandaJob.out
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc    986745 Jun  4 10:14 agis_schedconf.cvmfs.json
[2025-06-04 16:32:35] drwx------. 4 boinc boinc      4096 Jun  4 10:14 pilot3
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc 178083700 Jun  4 14:16 HITS.45006595._041482.pool.root.1
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc       531 Jun  4 14:16 boinc_task_state.xml
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc      1018 Jun  4 14:17 memory_monitor_summary.json
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc   1598969 Jun  4 14:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc    386984 Jun  4 14:17 log.45006595._041482.job.log.tgz.1
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc        95 Jun  4 14:18 pilot_heartbeat.json
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc      7697 Jun  4 14:19 heartbeat.json
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc      4612 Jun  4 14:19 pilotlog.txt
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc   1256559 Jun  4 14:19 log.45006595._041482.job.log.1
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc       357 Jun  4 14:19 output.list
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc       620 Jun  4 14:19 runtime_log
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc   1658880 Jun  4 14:19 result.tar.gz
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc      8673 Jun  4 14:19 runtime_log.err
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc       657 Jun  4 14:19 9G8LDm94kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbVlKDmlJrivn.diag
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc      8192 Jun  4 16:32 boinc_mmap_file
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc        28 Jun  4 16:32 wrapper_checkpoint.txt
[2025-06-04 16:32:35] -rw-r--r--. 1 boinc boinc     20506 Jun  4 16:32 stderr.txt
[2025-06-04 16:32:35] HITS file was successfully produced:
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc 178083700 Jun  4 14:16 shared/HITS.pool.root.1
[2025-06-04 16:32:35]  *** Contents of shared directory: ***
[2025-06-04 16:32:35] total 385488
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc 214464505 Jun  4 10:00 ATLAS.root_0
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:00 start_atlas.sh
[2025-06-04 16:32:35] -rw-r--r--. 2 boinc boinc    508876 Jun  4 10:00 input.tar.gz
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc 178083700 Jun  4 14:16 HITS.pool.root.1
[2025-06-04 16:32:35] -rw-------. 1 boinc boinc   1658880 Jun  4 14:19 result.tar.gz
16:32:37 (26824): run_atlas exited; CPU time 51842.347944
16:32:37 (26824): called boinc_finish(0)

</stderr_txt>
]]>

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