Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:09:27 (2187): wrapper (7.7.26015): starting
06:09:27 (2187): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:09:27] Arguments: --nthreads 8
[2025-06-04 06:09:27] Threads: 8
[2025-06-04 06:09:27] Checking for CVMFS
[2025-06-04 06:09:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:09:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:09:28] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:09:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:09:28] 2.11.2.0 20313 32890 94120 146767 0 257 24414860 25165824 2547 130560 0 17336377 99.781 20292506 5160 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:09:28] CVMFS is ok
[2025-06-04 06:09:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:09:28] Checking for apptainer binary...
[2025-06-04 06:09:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:09:28] Running /usr/bin/apptainer --version
[2025-06-04 06:09:28] apptainer version 1.3.2-1.el7
[2025-06-04 06:09:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:09:30] cg-vwn236.simple-grid.lan
[2025-06-04 06:09:30] apptainer works
[2025-06-04 06:09:30] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:09:30] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:09:30] Starting ATLAS job with PandaID=6677863999
[2025-06-04 06:09:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:20:22]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:20:22] 2025-06-04 07:53:42,923 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:20:22] 2025-06-04 07:53:42,923 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:20:22] 2025-06-04 07:53:42,924 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:20:22] 2025-06-04 07:53:42,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:20:22] 2025-06-04 07:53:42,929 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:20:22] 2025-06-04 07:53:42,933 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 10:20:22] 2025-06-04 07:53:42,935 | INFO     | sum of deviations: -13310024746.99999
[2025-06-04 10:20:22] 2025-06-04 07:53:42,936 | INFO     | mean x: 1749016894.5
[2025-06-04 10:20:22] 2025-06-04 07:53:42,936 | INFO     | mean y: 2490906.009174312
[2025-06-04 10:20:22] 2025-06-04 07:53:42,936 | INFO     | -- intersect: 7249087761.599129
[2025-06-04 10:20:22] 2025-06-04 07:53:42,936 | INFO     | intersect: 7249087761.599129
[2025-06-04 10:20:22] 2025-06-04 07:53:42,936 | INFO     | chi2: 2.619257354676145
[2025-06-04 10:20:22] 2025-06-04 07:53:42,937 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,939 | INFO     | sum of deviations: 1191228557.0000088
[2025-06-04 10:20:22] 2025-06-04 07:53:42,939 | INFO     | mean x: 1749016742.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,939 | INFO     | mean y: 2500954.8309859154
[2025-06-04 10:20:22] 2025-06-04 07:53:42,939 | INFO     | -- intersect: -692813729.0754544
[2025-06-04 10:20:22] 2025-06-04 07:53:42,939 | INFO     | intersect: -692813729.0754544
[2025-06-04 10:20:22] 2025-06-04 07:53:42,940 | INFO     | chi2: 1.8571711888312852
[2025-06-04 10:20:22] 2025-06-04 07:53:42,940 | INFO     | current chi2=1.8571711888312852 (change=29.095505429594837 %)
[2025-06-04 10:20:22] 2025-06-04 07:53:42,941 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,947 | INFO     | sum of deviations: 1060394109.9999883
[2025-06-04 10:20:22] 2025-06-04 07:53:42,948 | INFO     | mean x: 1749016589.5
[2025-06-04 10:20:22] 2025-06-04 07:53:42,948 | INFO     | mean y: 2500858.0096153845
[2025-06-04 10:20:22] 2025-06-04 07:53:42,948 | INFO     | -- intersect: -662164195.2605431
[2025-06-04 10:20:22] 2025-06-04 07:53:42,948 | INFO     | intersect: -662164195.2605431
[2025-06-04 10:20:22] 2025-06-04 07:53:42,949 | INFO     | chi2: 1.8570659817499238
[2025-06-04 10:20:22] 2025-06-04 07:53:42,949 | INFO     | current chi2=1.8570659817499238 (change=0.0056649102675139125 %)
[2025-06-04 10:20:22] 2025-06-04 07:53:42,949 | INFO     | right removable region: 207
[2025-06-04 10:20:22] 2025-06-04 07:53:42,949 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,951 | INFO     | sum of deviations: -50608628101.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,951 | INFO     | mean x: 1749017047.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,951 | INFO     | mean y: 2517004.248826291
[2025-06-04 10:20:22] 2025-06-04 07:53:42,952 | INFO     | -- intersect: 29542547908.124638
[2025-06-04 10:20:22] 2025-06-04 07:53:42,952 | INFO     | intersect: 29542547908.124638
[2025-06-04 10:20:22] 2025-06-04 07:53:42,952 | INFO     | chi2: 0.9918098992401068
[2025-06-04 10:20:22] 2025-06-04 07:53:42,952 | INFO     | current chi2=0.9918098992401068 (change=62.133927104588096 %)
[2025-06-04 10:20:22] 2025-06-04 07:53:42,953 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,963 | INFO     | sum of deviations: -50304749220.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,963 | INFO     | mean x: 1749017199.5
[2025-06-04 10:20:22] 2025-06-04 07:53:42,963 | INFO     | mean y: 2516741.721153846
[2025-06-04 10:20:22] 2025-06-04 07:53:42,964 | INFO     | -- intersect: 31534020138.485916
[2025-06-04 10:20:22] 2025-06-04 07:53:42,964 | INFO     | intersect: 31534020138.485916
[2025-06-04 10:20:22] 2025-06-04 07:53:42,964 | INFO     | chi2: 0.973691781496009
[2025-06-04 10:20:22] 2025-06-04 07:53:42,964 | INFO     | current chi2=0.973691781496009 (change=1.826773231239101 %)
[2025-06-04 10:20:22] 2025-06-04 07:53:42,964 | INFO     | left removable region: 20
[2025-06-04 10:20:22] 2025-06-04 07:53:42,965 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,966 | INFO     | sum of deviations: -22558079563.000004
[2025-06-04 10:20:22] 2025-06-04 07:53:42,967 | INFO     | mean x: 1749017169.0
[2025-06-04 10:20:22] 2025-06-04 07:53:42,967 | INFO     | mean y: 2517719.8128342247
[2025-06-04 10:20:22] 2025-06-04 07:53:42,967 | INFO     | -- intersect: 19460839132.52428
[2025-06-04 10:20:22] 2025-06-04 07:53:42,967 | INFO     | intersect: 19460839132.52428
[2025-06-04 10:20:22] 2025-06-04 07:53:42,967 | INFO     | chi2: 0.1559851627588253
[2025-06-04 10:20:22] 2025-06-04 07:53:42,968 | INFO     | -- intersect: 19460839132.52428
[2025-06-04 10:20:22] 2025-06-04 07:53:42,968 | INFO     | current memory leak: -11.13 B/s (using 187 data points, chi2=0.16)
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | ..............................
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | . Timing measurements:
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | . get job = 0 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | . initial setup = 2 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | . payload setup = 34 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,969 | INFO     | . stage-in = 0 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,970 | INFO     | . payload execution = 13270 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,970 | INFO     | . stage-out = 8 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,970 | INFO     | . log creation = 1 s
[2025-06-04 10:20:22] 2025-06-04 07:53:42,970 | INFO     | ..............................
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | 
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | job summary report
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | --------------------------------------------------
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | PanDA job id: 6677863999
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | task id: 45006595
[2025-06-04 10:20:22] 2025-06-04 07:53:43,384 | INFO     | errors: (none)
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | pilot state: finished 
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | transexitcode: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | exeerrorcode: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | exeerrordiag: 
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | exitcode: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | exitmsg: OK
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | cpuconsumptiontime: 50870 s
[2025-06-04 10:20:22] 2025-06-04 07:53:43,385 | INFO     | nevents: 400
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | neventsw: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | pid: 17449
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | pgrp: 17449
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | corecount: 8
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | event service: False
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | sizes: {0: 2405014, 1: 2405213, 8: 2405419, 12: 2405447, 13308: 2435000, 13309: 2434999, 13318: 2444126, 13320: 2444182, 13409: 2444352}
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | --------------------------------------------------
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | 
[2025-06-04 10:20:22] 2025-06-04 07:53:43,386 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-04 10:20:22] 2025-06-04 07:53:43,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:20:22] 2025-06-04 07:53:43,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,781 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:20:22] 2025-06-04 07:53:43,781 | INFO     | job 6677863999 has completed (purged errors)
[2025-06-04 10:20:22] 2025-06-04 07:53:43,781 | INFO     | overall cleanup function is called
[2025-06-04 10:20:22] 2025-06-04 07:53:44,790 | INFO     | --- collectZombieJob: --- 10, [17449]
[2025-06-04 10:20:22] 2025-06-04 07:53:44,790 | INFO     | zombie collector waiting for pid 17449
[2025-06-04 10:20:22] 2025-06-04 07:53:44,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:20:22] 2025-06-04 07:53:44,790 | INFO     | collected zombie processes
[2025-06-04 10:20:22] 2025-06-04 07:53:44,790 | INFO     | will attempt to kill all subprocesses of pid=17449
[2025-06-04 10:20:22] 2025-06-04 07:53:44,930 | INFO     | process IDs to be killed: [17449] (in reverse order)
[2025-06-04 10:20:22] 2025-06-04 07:53:44,988 | INFO     | 13439s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 10:20:22] 2025-06-04 07:53:45,452 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:20:22] 2025-06-04 07:53:45,453 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:20:22] 2025-06-04 07:53:45,456 | INFO     | did not find any defunct processes belonging to 17449
[2025-06-04 10:20:22] 2025-06-04 07:53:45,460 | INFO     | did not find any defunct processes belonging to 17449
[2025-06-04 10:20:22] 2025-06-04 07:53:45,460 | INFO     | ready for new job
[2025-06-04 10:20:22] 2025-06-04 07:53:45,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:20:22] 2025-06-04 07:53:45,462 | INFO     | **************************************
[2025-06-04 10:20:22] 2025-06-04 07:53:45,463 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:20:22] 2025-06-04 07:53:45,463 | INFO     | **************************************
[2025-06-04 10:20:22] 2025-06-04 07:53:45,463 | INFO     | 
[2025-06-04 10:20:22] 2025-06-04 07:53:45,463 | INFO     | pilot is running in a VM
[2025-06-04 10:20:22] 2025-06-04 07:53:45,464 | INFO     | architecture information:
[2025-06-04 10:20:22] 2025-06-04 07:53:45,477 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:20:22] 2025-06-04 07:53:45,814 | INFO     | cat /etc/os-release:
[2025-06-04 10:20:22] NAME="CentOS Linux"
[2025-06-04 10:20:22] VERSION="7 (Core)"
[2025-06-04 10:20:22] ID="centos"
[2025-06-04 10:20:22] ID_LIKE="rhel fedora"
[2025-06-04 10:20:22] VERSION_ID="7"
[2025-06-04 10:20:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:20:22] ANSI_COLOR="0;31"
[2025-06-04 10:20:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:20:22] HOME_URL="https://www.centos.org/"
[2025-06-04 10:20:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:20:22] 
[2025-06-04 10:20:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:20:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:20:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:20:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:20:22] 
[2025-06-04 10:20:22] 2025-06-04 07:53:45,814 | INFO     | **************************************
[2025-06-04 10:20:22] 2025-06-04 07:53:46,318 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-04 10:20:22] 2025-06-04 07:53:46,535 | INFO     | sufficient remaining disk space (497259905024 B)
[2025-06-04 10:20:22] 2025-06-04 07:53:46,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:20:22] 2025-06-04 07:53:46,536 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:20:22] 2025-06-04 07:53:46,536 | INFO     | update_server=False
[2025-06-04 10:20:22] 2025-06-04 07:53:46,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:20:22] 2025-06-04 07:53:46,537 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:20:22] 2025-06-04 07:53:46,537 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:20:22] 2025-06-04 07:53:46,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:20:22] 2025-06-04 07:53:46,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:20:22] 2025-06-04 07:53:46,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:20:22] 2025-06-04 07:53:46,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:20:22] 2025-06-04 07:53:46,766 | INFO     | all payload control threads have been joined
[2025-06-04 10:20:22] 2025-06-04 07:53:47,269 | INFO     | all data control threads have been joined
[2025-06-04 10:20:22] 2025-06-04 07:53:47,484 | INFO     | all job control threads have been joined
[2025-06-04 10:20:22] 2025-06-04 07:53:47,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:20:22] 2025-06-04 07:53:47,488 | INFO     | aborting loop
[2025-06-04 10:20:22] 2025-06-04 07:53:47,542 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:47,681 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:47,772 | INFO     | [payload] control thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:47,831 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,038 | INFO     | [job] validate thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:20:22] 2025-06-04 07:53:48,275 | INFO     | [data] control thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,492 | INFO     | [job] control thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,494 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,551 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,556 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,853 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:48,994 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:49,089 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:49,147 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:50,549 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:20:22] 2025-06-04 07:53:52,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641181402944)>', '<ExcThread(monitor, started 139640526862080)>']
[2025-06-04 10:20:22] 2025-06-04 07:53:52,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:20:22] 2025-06-04 07:53:52,574 | INFO     | [monitor] control thread has ended
[2025-06-04 10:20:22] 2025-06-04 07:53:57,524 | INFO     | all workflow threads have been joined
[2025-06-04 10:20:22] 2025-06-04 07:53:57,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:20:22] 2025-06-04 07:53:57,524 | INFO     | traces error code: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:57,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:20:22] 2025-06-04 07:53:57,940 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:20:22] 2025-06-04 07:53:58,022 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:20:22] 2025-06-04 07:53:58,087 [wrapper] pilotpid: 5838
[2025-06-04 10:20:22] 2025-06-04 07:53:58,169 [wrapper] Pilot exit status: 0
[2025-06-04 10:20:22] 2025-06-04 07:53:58,632 [wrapper] pandaids: 6677863999
[2025-06-04 10:20:22] 2025-06-04 07:53:59,611 [wrapper] cleanup supervisor_pilot  1834 5839
[2025-06-04 10:20:22] 2025-06-04 07:53:59,720 [wrapper] Test setup, not cleaning
[2025-06-04 10:20:22] 2025-06-04 07:53:59,825 [wrapper] apfmon messages muted
[2025-06-04 10:20:22] 2025-06-04 07:53:59,939 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:20:22] 2025-06-04 07:54:00,057 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:20:22]  *** Error codes and diagnostics ***
[2025-06-04 10:20:22]     "exeErrorCode": 0,
[2025-06-04 10:20:22]     "exeErrorDiag": "",
[2025-06-04 10:20:22]     "pilotErrorCode": 0,
[2025-06-04 10:20:22]     "pilotErrorDiag": "",
[2025-06-04 10:20:22]  *** Listing of results directory ***
[2025-06-04 10:20:22] total 388932
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:48 queuedata.json
[2025-06-04 10:20:22] -rwx------. 1 boinc boinc     37140 Jun  3 19:48 runpilot2-wrapper.sh
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:20:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:09 run_atlas
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:09 job.xml
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc 213056357 Jun  4 06:09 EVNT.45006593._001636.pool.root.1
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc    508880 Jun  4 06:09 input.tar.gz
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:09 init_data.xml
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:09 start_atlas.sh
[2025-06-04 10:20:22] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:09 shared
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:09 boinc_lockfile
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:09 pandaJob.out
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc    986077 Jun  4 06:09 agis_schedconf.cvmfs.json
[2025-06-04 10:20:22] drwx------. 4 boinc boinc      4096 Jun  4 06:09 pilot3
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc 178315332 Jun  4 09:51 HITS.45006595._040826.pool.root.1
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc       531 Jun  4 09:51 boinc_task_state.xml
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc      1014 Jun  4 09:51 memory_monitor_summary.json
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc   1603667 Jun  4 09:52 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc    374141 Jun  4 09:52 log.45006595._040826.job.log.tgz.1
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc        95 Jun  4 09:53 pilot_heartbeat.json
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc      7687 Jun  4 09:53 heartbeat.json
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc      4540 Jun  4 09:53 pilotlog.txt
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc   1159246 Jun  4 09:54 log.45006595._040826.job.log.1
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc       357 Jun  4 09:54 output.list
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc       620 Jun  4 09:54 runtime_log
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc   1556480 Jun  4 09:54 result.tar.gz
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc      8673 Jun  4 09:54 runtime_log.err
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc       656 Jun  4 09:54 H0WLDmNvkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbQlKDmHbUcQm.diag
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:20 boinc_mmap_file
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:20 wrapper_checkpoint.txt
[2025-06-04 10:20:22] -rw-r--r--. 1 boinc boinc     20528 Jun  4 10:20 stderr.txt
[2025-06-04 10:20:22] HITS file was successfully produced:
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc 178315332 Jun  4 09:51 shared/HITS.pool.root.1
[2025-06-04 10:20:22]  *** Contents of shared directory: ***
[2025-06-04 10:20:22] total 384240
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc 213056357 Jun  4 06:09 ATLAS.root_0
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc    508880 Jun  4 06:09 input.tar.gz
[2025-06-04 10:20:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:09 start_atlas.sh
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc 178315332 Jun  4 09:51 HITS.pool.root.1
[2025-06-04 10:20:22] -rw-------. 1 boinc boinc   1556480 Jun  4 09:54 result.tar.gz
10:20:24 (2187): run_atlas exited; CPU time 51051.266168
10:20:24 (2187): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN