Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:54:19 (3565075): wrapper (7.7.26015): starting
13:54:19 (3565075): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 13:54:19] Arguments: --nthreads 12
[2025-06-03 13:54:19] Threads: 12
[2025-06-03 13:54:19] Checking for CVMFS
[2025-06-03 13:54:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:54:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:54:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:54:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:54:19] 2.11.5.0 1195585 22341 224020 146755 0 710 33255554 45568001 15503 130560 0 251507658 99.818 131573050 26400 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 13:54:19] CVMFS is ok
[2025-06-03 13:54:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:54:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:54:19] Further information can be found at the LHC@home message board.
[2025-06-03 13:54:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:54:19] Checking for apptainer binary...
[2025-06-03 13:54:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:54:19] Running /usr/bin/apptainer --version
[2025-06-03 13:54:19] apptainer version 1.4.0-1.el9
[2025-06-03 13:54:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:54:20] wns0064.triumf.lcg
[2025-06-03 13:54:20] apptainer works
[2025-06-03 13:54:20] Set ATHENA_PROC_NUMBER=12
[2025-06-03 13:54:20] Set ATHENA_CORE_NUMBER=12
[2025-06-03 13:54:20] Starting ATLAS job with PandaID=6677977877
[2025-06-03 13:54:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:57:26]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard info from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | found no stored workdir sizes
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | wrong length of table data, x=[1748984095.0], y=[1079.0] (must be same and length>=4)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | . Timing measurements:
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . get job = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . initial setup = 2 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload setup = 4 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-in = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload execution = 16 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-out = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . log creation = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677977877/pilotlog.txt
[2025-06-03 13:57:26] 2025-06-03 20:57:12,023 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 13:57:26] - Log from pilotlog.txt -
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard info from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | found no stored workdir sizes
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | wrong length of table data, x=[1748984095.0], y=[1079.0] (must be same and length>=4)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | . Timing measurements:
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . get job = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . initial setup = 2 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload setup = 4 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-in = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload execution = 16 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-out = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . log creation = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677977877/pilotlog.txt
[2025-06-03 13:57:26] 2025-06-03 20:57:12,024 | WARNING  | 
[2025-06-03 13:57:26] [begin log extracts]
[2025-06-03 13:57:26] - Log from pilotlog.txt -
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard info from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:57:26] 2025-06-03 20:57:12,011 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | found no stored workdir sizes
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | WARNING  | wrong length of table data, x=[1748984095.0], y=[1079.0] (must be same and length>=4)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,012 | INFO     | . Timing measurements:
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . get job = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . initial setup = 2 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload setup = 4 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-in = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . payload execution = 16 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . stage-out = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | . log creation = 0 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | ..............................
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 13:57:26] 2025-06-03 20:57:12,013 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677977877/pilotlog.txt
[2025-06-03 13:57:26] [end log extracts]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,024 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,025 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | 
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | job summary report
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | --------------------------------------------------
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | PanDA job id: 6677977877
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | task id: 45006595
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 13:55:03,169 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | pilot state: failed 
[2025-06-03 13:57:26] 2025-06-03 20:57:12,508 | INFO     | transexitcode: 65
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | exeerrorcode: 65
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | exitcode: 65
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | cpuconsumptiontime: 17 s
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | nevents: 0
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | neventsw: 0
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | pid: 3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | pgrp: 3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | corecount: 12
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | event service: False
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | sizes: {0: 2405181, 1: 2405181, 6: 2405415, 11: 2405443, 24: 2428820, 25: 2433055, 27: 2433211, 146: 2433353}
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | --------------------------------------------------
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | 
[2025-06-03 13:57:26] 2025-06-03 20:57:12,509 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | job 6677977877 has completed (purged errors)
[2025-06-03 13:57:26] 2025-06-03 20:57:12,536 | INFO     | overall cleanup function is called
[2025-06-03 13:57:26] 2025-06-03 20:57:13,542 | INFO     | --- collectZombieJob: --- 10, [3574932]
[2025-06-03 13:57:26] 2025-06-03 20:57:13,542 | INFO     | zombie collector waiting for pid 3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:13,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:57:26] 2025-06-03 20:57:13,542 | INFO     | collected zombie processes
[2025-06-03 13:57:26] 2025-06-03 20:57:13,542 | INFO     | will attempt to kill all subprocesses of pid=3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:13,706 | INFO     | process IDs to be killed: [3574932] (in reverse order)
[2025-06-03 13:57:26] 2025-06-03 20:57:13,766 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:57:26] 2025-06-03 20:57:13,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:57:26] 2025-06-03 20:57:13,773 | INFO     | did not find any defunct processes belonging to 3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:13,781 | INFO     | did not find any defunct processes belonging to 3574932
[2025-06-03 13:57:26] 2025-06-03 20:57:13,781 | INFO     | ready for new job
[2025-06-03 13:57:26] 2025-06-03 20:57:13,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:57:26] 2025-06-03 20:57:13,782 | INFO     | **************************************
[2025-06-03 13:57:26] 2025-06-03 20:57:13,782 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:57:26] 2025-06-03 20:57:13,782 | INFO     | **************************************
[2025-06-03 13:57:26] 2025-06-03 20:57:13,782 | INFO     | 
[2025-06-03 13:57:26] 2025-06-03 20:57:13,784 | INFO     | architecture information:
[2025-06-03 13:57:26] 2025-06-03 20:57:13,785 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:57:26] 2025-06-03 20:57:13,795 | INFO     | cat /etc/os-release:
[2025-06-03 13:57:26] NAME="CentOS Linux"
[2025-06-03 13:57:26] VERSION="7 (Core)"
[2025-06-03 13:57:26] ID="centos"
[2025-06-03 13:57:26] ID_LIKE="rhel fedora"
[2025-06-03 13:57:26] VERSION_ID="7"
[2025-06-03 13:57:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:57:26] ANSI_COLOR="0;31"
[2025-06-03 13:57:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:57:26] HOME_URL="https://www.centos.org/"
[2025-06-03 13:57:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:57:26] 
[2025-06-03 13:57:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:57:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:57:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:57:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:57:26] 
[2025-06-03 13:57:26] 2025-06-03 20:57:13,795 | INFO     | **************************************
[2025-06-03 13:57:26] 2025-06-03 20:57:14,300 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | INFO     | sufficient remaining disk space (1969756307456 B)
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | INFO     | update_server=False
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:57:26] 2025-06-03 20:57:14,313 | INFO     | aborting loop
[2025-06-03 13:57:26] 2025-06-03 20:57:14,394 | INFO     | all data control threads have been joined
[2025-06-03 13:57:26] 2025-06-03 20:57:14,557 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:57:26] 2025-06-03 20:57:14,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:57:26] 2025-06-03 20:57:14,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:57:26] 2025-06-03 20:57:14,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:57:26] 2025-06-03 20:57:15,318 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,318 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,335 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,399 | INFO     | [data] control thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,567 | INFO     | all job control threads have been joined
[2025-06-03 13:57:26] 2025-06-03 20:57:15,635 | INFO     | all payload control threads have been joined
[2025-06-03 13:57:26] 2025-06-03 20:57:15,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:57:26] 2025-06-03 20:57:15,873 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,942 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:15,987 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,390 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,573 | INFO     | [job] control thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,589 | INFO     | [job] validate thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,603 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,640 | INFO     | [payload] control thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:16,686 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:17,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:57:26] 2025-06-03 20:57:18,101 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:19,738 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:57:26] 2025-06-03 20:57:21,540 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968358926144)>', '<ExcThread(monitor, started 139967514785536)>']
[2025-06-03 13:57:26] 2025-06-03 20:57:21,600 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:57:26] 2025-06-03 20:57:21,600 | INFO     | [monitor] control thread has ended
[2025-06-03 13:57:26] 2025-06-03 20:57:26,566 | INFO     | all workflow threads have been joined
[2025-06-03 13:57:26] 2025-06-03 20:57:26,566 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:57:26] 2025-06-03 20:57:26,566 | INFO     | traces error code: 0
[2025-06-03 13:57:26] 2025-06-03 20:57:26,566 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:57:26] 2025-06-03 20:57:26,743 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:57:26] 2025-06-03 20:57:26,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:57:26] 2025-06-03 20:57:26,747 [wrapper] pilotpid: 3568628
[2025-06-03 13:57:26] 2025-06-03 20:57:26,749 [wrapper] Pilot exit status: 0
[2025-06-03 13:57:26] 2025-06-03 20:57:26,760 [wrapper] pandaids: 6677977877
[2025-06-03 13:57:26] 2025-06-03 20:57:26,802 [wrapper] cleanup supervisor_pilot 3568634 3568629
[2025-06-03 13:57:26] 2025-06-03 20:57:26,804 [wrapper] Test setup, not cleaning
[2025-06-03 13:57:26] 2025-06-03 20:57:26,807 [wrapper] apfmon messages muted
[2025-06-03 13:57:26] 2025-06-03 20:57:26,809 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:57:26] 2025-06-03 20:57:26,811 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:57:26]  *** Error codes and diagnostics ***
[2025-06-03 13:57:26]     "exeErrorCode": 65,
[2025-06-03 13:57:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 13:57:26]     "pilotErrorCode": 1305,
[2025-06-03 13:57:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 13:57:26]  *** Listing of results directory ***
[2025-06-03 13:57:26] total 214900
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc    495897 Jun  3 11:57 pilot3.tar.gz
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc      5111 Jun  3 12:16 queuedata.json
[2025-06-03 13:57:26] -rwx------. 1 boinc boinc     37140 Jun  3 12:18 runpilot2-wrapper.sh
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc       100 Jun  3 13:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:57:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 13:54 run_atlas
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc       105 Jun  3 13:54 job.xml
[2025-06-03 13:57:26] -rw-r--r--. 2 boinc boinc 216037154 Jun  3 13:54 EVNT.45006593._001748.pool.root.1
[2025-06-03 13:57:26] -rw-r--r--. 2 boinc boinc    508880 Jun  3 13:54 input.tar.gz
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc      6602 Jun  3 13:54 init_data.xml
[2025-06-03 13:57:26] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:54 start_atlas.sh
[2025-06-03 13:57:26] drwxrwx--x. 2 boinc boinc      4096 Jun  3 13:54 shared
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc         0 Jun  3 13:54 boinc_lockfile
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc      2525 Jun  3 13:54 pandaJob.out
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc    986853 Jun  3 13:54 agis_schedconf.cvmfs.json
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc   1603667 Jun  3 13:54 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:57:26] drwx------. 4 boinc boinc      4096 Jun  3 13:54 pilot3
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc       975 Jun  3 13:55 memory_monitor_summary.json
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc       522 Jun  3 13:55 boinc_task_state.xml
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc     20743 Jun  3 13:55 log.45006595._043607.job.log.tgz.1
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc        95 Jun  3 13:56 pilot_heartbeat.json
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc      8347 Jun  3 13:57 heartbeat.json
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc      8192 Jun  3 13:57 boinc_mmap_file
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc        22 Jun  3 13:57 wrapper_checkpoint.txt
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc      4352 Jun  3 13:57 pilotlog.txt
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc     73437 Jun  3 13:57 log.45006595._043607.job.log.1
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc       188 Jun  3 13:57 output.list
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc       620 Jun  3 13:57 runtime_log
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc    112640 Jun  3 13:57 result.tar.gz
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc      8484 Jun  3 13:57 runtime_log.err
[2025-06-03 13:57:26] -rw-------. 1 boinc boinc       645 Jun  3 13:57 pWYNDmSKmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmHkZKDmYNZ3Dn.diag
[2025-06-03 13:57:26] -rw-r--r--. 1 boinc boinc     21451 Jun  3 13:57 stderr.txt
[2025-06-03 13:57:27] No HITS result produced
[2025-06-03 13:57:27]  *** Contents of shared directory: ***
[2025-06-03 13:57:27] total 211604
[2025-06-03 13:57:27] -rw-r--r--. 2 boinc boinc 216037154 Jun  3 13:54 ATLAS.root_0
[2025-06-03 13:57:27] -rw-r--r--. 2 boinc boinc    508880 Jun  3 13:54 input.tar.gz
[2025-06-03 13:57:27] -rw-r--r--. 2 boinc boinc     15093 Jun  3 13:54 start_atlas.sh
[2025-06-03 13:57:27] -rw-------. 1 boinc boinc    112640 Jun  3 13:57 result.tar.gz
13:57:28 (3565075): run_atlas exited; CPU time 20.667899
13:57:28 (3565075): called boinc_finish(0)

</stderr_txt>
]]>

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