Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:52:01 (43979): wrapper (7.7.26015): starting
16:52:01 (43979): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 16:52:01] Arguments: --nthreads 8
[2025-06-03 16:52:01] Threads: 8
[2025-06-03 16:52:01] Checking for CVMFS
[2025-06-03 16:52:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 16:52:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 16:52:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 16:52:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 16:52:02] 2.11.2.0 5089 27846 262476 146755 2 428 14519875 18432000 6710 130560 0 96165791 99.496 95318493 34148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 16:52:02] CVMFS is ok
[2025-06-03 16:52:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 16:52:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 16:52:02] Further information can be found at the LHC@home message board.
[2025-06-03 16:52:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 16:52:02] Checking for apptainer binary...
[2025-06-03 16:52:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 16:52:02] Running /usr/bin/apptainer --version
[2025-06-03 16:52:02] apptainer version 1.3.2-1.el7
[2025-06-03 16:52:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 16:52:02] c-211-40.aglt2.org
[2025-06-03 16:52:02] apptainer works
[2025-06-03 16:52:02] Set ATHENA_PROC_NUMBER=8
[2025-06-03 16:52:02] Set ATHENA_CORE_NUMBER=8
[2025-06-03 16:52:02] Starting ATLAS job with PandaID=6677782284
[2025-06-03 16:52:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:56:02]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:56:02]  is_tar=False
[2025-06-03 17:56:02]  lfn=log.45006595._038828.job.log.tgz.1
[2025-06-03 17:56:02]  mtime=0
[2025-06-03 17:56:02]  protocol_id=None
[2025-06-03 17:56:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 17:56:02]  replicas=None
[2025-06-03 17:56:02]  scope=mc23_13p6TeV
[2025-06-03 17:56:02]  status=None
[2025-06-03 17:56:02]  status_code=0
[2025-06-03 17:56:02]  storage_token=
[2025-06-03 17:56:02]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6677782284/log.45006595._038828.job.log.tgz.1
[2025-06-03 17:56:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/35/log.45006595._038828.job.log.tgz.1
[2025-06-03 17:56:02]  workdir=None
[2025-06-03 17:56:02] ]
[2025-06-03 17:56:02] 2025-06-03 21:55:23,206 | INFO     | transferring file log.45006595._038828.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6677782284/log.45006595._038828.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 17:56:02] 2025-06-03 21:55:23,206 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6677782284/log.45006595._038828.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._038828.job
[2025-06-03 17:56:02] 2025-06-03 21:55:23,224 | INFO     | adding to output.list: log.45006595._038828.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/35/log.45006595._038828.job.log.tg
[2025-06-03 17:56:02] 2025-06-03 21:55:23,224 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 17:56:02] 2025-06-03 21:55:23,224 | INFO     | summary of transferred files:
[2025-06-03 17:56:02] 2025-06-03 21:55:23,224 | INFO     |  -- lfn=log.45006595._038828.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 17:56:02] 2025-06-03 21:55:23,224 | INFO     | stage-out finished correctly
[2025-06-03 17:56:02] 2025-06-03 21:55:23,275 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 17:56:02] 2025-06-03 21:55:25,224 | INFO     | job 6677782284 has state=finished
[2025-06-03 17:56:02] 2025-06-03 21:55:25,225 | INFO     | preparing for final server update for job 6677782284 in state='finished'
[2025-06-03 17:56:02] 2025-06-03 21:55:25,225 | INFO     | this job has now completed (state=finished)
[2025-06-03 17:56:02] 2025-06-03 21:55:25,225 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 17:56:02] 2025-06-03 21:55:25,225 | INFO     | log transfer has been attempted: DONE
[2025-06-03 17:56:02] 2025-06-03 21:55:25,225 | INFO     | job 6677782284 has finished - writing final server update
[2025-06-03 17:56:02] 2025-06-03 21:55:25,226 | INFO     | total number of processed events: 400 (read)
[2025-06-03 17:56:02] 2025-06-03 21:55:25,226 | INFO     | executing command: lscpu
[2025-06-03 17:56:02] 2025-06-03 21:55:25,398 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 17:56:02] 2025-06-03 21:55:25,524 | INFO     | monitor loop #288: job 0:6677782284 is in state 'finished'
[2025-06-03 17:56:02] 2025-06-03 21:55:25,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 17:56:02] 2025-06-03 21:55:28,028 | INFO     | monitor loop #289: job 0:6677782284 is in state 'finished'
[2025-06-03 17:56:02] 2025-06-03 21:55:28,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,200 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 17:56:02] 2025-06-03 21:55:29,204 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2994.1909999999993
[2025-06-03 17:56:02] 2025-06-03 21:55:29,213 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677782284/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,214 | INFO     | extracted standard info from prmon json
[2025-06-03 17:56:02] 2025-06-03 21:55:29,214 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:56:02] 2025-06-03 21:55:29,214 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:56:02] 2025-06-03 21:55:29,214 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:56:02] 2025-06-03 21:55:29,214 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | sum of square deviations: 51573060.0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | sum of deviations: -916785347.9999998
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | mean x: 1748985904.0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | mean y: 2499222.9454545453
[2025-06-03 17:56:02] 2025-06-03 21:55:29,216 | INFO     | -- intersect: 31093240215.349903
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | intersect: 31093240215.349903
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | chi2: 0.0038025394145756214
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | -- intersect: 31093240215.349903
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | current memory leak: -17.78 B/s (using 55 data points, chi2=0.00)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | could have reported an average CPU frequency of 2994 MHz (6 samples)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | ..............................
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | . Timing measurements:
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | . get job = 0 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,217 | INFO     | . initial setup = 2 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | . payload setup = 3 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | . stage-in = 0 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | . payload execution = 3769 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | . stage-out = 0 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | . log creation = 0 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,218 | INFO     | ..............................
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | 
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | job summary report
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | --------------------------------------------------
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | PanDA job id: 6677782284
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | task id: 45006595
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | errors: (none)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | pilot state: finished 
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | transexitcode: 0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | exeerrorcode: 0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | exeerrordiag: 
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | exitcode: 0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | exitmsg: OK
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | cpuconsumptiontime: 26252 s
[2025-06-03 17:56:02] 2025-06-03 21:55:29,286 | INFO     | nevents: 400
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | neventsw: 0
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | pid: 55085
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | pgrp: 55085
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | corecount: 8
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | event service: False
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | sizes: {0: 2405525, 2: 2405787, 11: 2405815, 3776: 2431791, 3777: 2440788, 3783: 2440926}
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | --------------------------------------------------
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | 
[2025-06-03 17:56:02] 2025-06-03 21:55:29,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | job 6677782284 has completed (purged errors)
[2025-06-03 17:56:02] 2025-06-03 21:55:29,542 | INFO     | overall cleanup function is called
[2025-06-03 17:56:02] 2025-06-03 21:55:30,554 | INFO     | --- collectZombieJob: --- 10, [55085]
[2025-06-03 17:56:02] 2025-06-03 21:55:30,554 | INFO     | zombie collector waiting for pid 55085
[2025-06-03 17:56:02] 2025-06-03 21:55:30,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:56:02] 2025-06-03 21:55:30,555 | INFO     | collected zombie processes
[2025-06-03 17:56:02] 2025-06-03 21:55:30,555 | INFO     | will attempt to kill all subprocesses of pid=55085
[2025-06-03 17:56:02] 2025-06-03 21:55:30,668 | INFO     | process IDs to be killed: [55085] (in reverse order)
[2025-06-03 17:56:02] 2025-06-03 21:55:31,120 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:56:02] 2025-06-03 21:55:31,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:56:02] 2025-06-03 21:55:31,125 | INFO     | did not find any defunct processes belonging to 55085
[2025-06-03 17:56:02] 2025-06-03 21:55:31,128 | INFO     | did not find any defunct processes belonging to 55085
[2025-06-03 17:56:02] 2025-06-03 21:55:31,128 | INFO     | ready for new job
[2025-06-03 17:56:02] 2025-06-03 21:55:31,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:56:02] 2025-06-03 21:55:31,129 | INFO     | ***************************************
[2025-06-03 17:56:02] 2025-06-03 21:55:31,129 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-03 17:56:02] 2025-06-03 21:55:31,129 | INFO     | ***************************************
[2025-06-03 17:56:02] 2025-06-03 21:55:31,129 | INFO     | 
[2025-06-03 17:56:02] 2025-06-03 21:55:31,131 | INFO     | architecture information:
[2025-06-03 17:56:02] 2025-06-03 21:55:31,131 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:56:02] 2025-06-03 21:55:31,210 | INFO     | cat /etc/os-release:
[2025-06-03 17:56:02] NAME="CentOS Linux"
[2025-06-03 17:56:02] VERSION="7 (Core)"
[2025-06-03 17:56:02] ID="centos"
[2025-06-03 17:56:02] ID_LIKE="rhel fedora"
[2025-06-03 17:56:02] VERSION_ID="7"
[2025-06-03 17:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:56:02] ANSI_COLOR="0;31"
[2025-06-03 17:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:56:02] HOME_URL="https://www.centos.org/"
[2025-06-03 17:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:56:02] 
[2025-06-03 17:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:56:02] 
[2025-06-03 17:56:02] 2025-06-03 21:55:31,211 | INFO     | ***************************************
[2025-06-03 17:56:02] 2025-06-03 21:55:31,713 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | INFO     | sufficient remaining disk space (75227987968 B)
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | INFO     | update_server=False
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:56:02] 2025-06-03 21:55:31,729 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:56:02] 2025-06-03 21:55:31,730 | INFO     | aborting loop
[2025-06-03 17:56:02] 2025-06-03 21:55:31,763 | INFO     | all payload control threads have been joined
[2025-06-03 17:56:02] 2025-06-03 21:55:31,863 | INFO     | all job control threads have been joined
[2025-06-03 17:56:02] 2025-06-03 21:55:32,014 | INFO     | all data control threads have been joined
[2025-06-03 17:56:02] 2025-06-03 21:55:32,735 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:32,735 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:32,767 | INFO     | [payload] control thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:32,863 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:32,868 | INFO     | [job] control thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,020 | INFO     | [data] control thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,038 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,406 | INFO     | [job] validate thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,432 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,484 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,513 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,731 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:33,847 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:56:02] 2025-06-03 21:55:33,938 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:34,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:56:02] 2025-06-03 21:55:35,298 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:37,855 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:41,909 | INFO     | job.realtimelogging is not enabled
[2025-06-03 17:56:02] 2025-06-03 21:55:42,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:56:02] 2025-06-03 21:55:44,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762119259968)>', '<ExcThread(monitor, started 139760853055232)>']
[2025-06-03 17:56:02] 2025-06-03 21:55:49,921 | INFO     | all workflow threads have been joined
[2025-06-03 17:56:02] 2025-06-03 21:55:49,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:56:02] 2025-06-03 21:55:49,921 | INFO     | traces error code: 0
[2025-06-03 17:56:02] 2025-06-03 21:55:49,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:56:02] 2025-06-03 21:56:02,236 | INFO     | PID=47656 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 17:56:02] 2025-06-03 21:56:02,236 | INFO     | .. there are 12 such processes running
[2025-06-03 17:56:02] 2025-06-03 21:56:02,236 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:56:02] 2025-06-03 21:56:02,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:56:02] 2025-06-03 21:56:02,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:56:02] 2025-06-03 21:56:02,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:56:02] 2025-06-03 21:56:02,237 | CRITICAL | thread 'MainThread' is not alive
[2025-06-03 17:56:02] 2025-06-03 21:56:02,237 | INFO     | [monitor] control thread has ended
[2025-06-03 17:56:02] 2025-06-03 21:56:02,315 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:56:02] 2025-06-03 21:56:02,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:56:02] 2025-06-03 21:56:02,324 [wrapper] pilotpid: 47656
[2025-06-03 17:56:02] 2025-06-03 21:56:02,329 [wrapper] Pilot exit status: 0
[2025-06-03 17:56:02] 2025-06-03 21:56:02,354 [wrapper] pandaids: 6677782284
[2025-06-03 17:56:02] 2025-06-03 21:56:02,392 [wrapper] cleanup supervisor_pilot 32718 47657
[2025-06-03 17:56:02] 2025-06-03 21:56:02,394 [wrapper] Test setup, not cleaning
[2025-06-03 17:56:02] 2025-06-03 21:56:02,396 [wrapper] apfmon messages muted
[2025-06-03 17:56:02] 2025-06-03 21:56:02,397 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:56:02] 2025-06-03 21:56:02,399 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:56:02]  *** Error codes and diagnostics ***
[2025-06-03 17:56:02]     "exeErrorCode": 0,
[2025-06-03 17:56:02]     "exeErrorDiag": "",
[2025-06-03 17:56:02]     "pilotErrorCode": 0,
[2025-06-03 17:56:02]     "pilotErrorDiag": "",
[2025-06-03 17:56:02]  *** Listing of results directory ***
[2025-06-03 17:56:02] total 382796
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 12:37 queuedata.json
[2025-06-03 17:56:02] -rwx------ 1 boincer umatlas     37140 Jun  3 12:38 runpilot2-wrapper.sh
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas       100 Jun  3 16:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:56:02] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 16:52 run_atlas
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas       105 Jun  3 16:52 job.xml
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas 213660652 Jun  3 16:52 EVNT.45006593._001557.pool.root.1
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 16:52 start_atlas.sh
[2025-06-03 17:56:02] drwxrwx--x 2 boincer umatlas      4096 Jun  3 16:52 shared
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas    564117 Jun  3 16:52 input.tar.gz
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas         0 Jun  3 16:52 boinc_lockfile
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 16:52 pandaJob.out
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas    986853 Jun  3 16:52 agis_schedconf.cvmfs.json
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas   1603667 Jun  3 16:52 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:56:02] drwx------ 6 boincer umatlas      4096 Jun  3 16:52 pilot3
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas      6337 Jun  3 17:48 init_data.xml
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas 172988137 Jun  3 17:54 HITS.45006595._038828.pool.root.1
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas       529 Jun  3 17:55 boinc_task_state.xml
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas      1038 Jun  3 17:55 memory_monitor_summary.json
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas    307648 Jun  3 17:55 log.45006595._038828.job.log.tgz.1
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas      7719 Jun  3 17:55 heartbeat.json
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 17:55 boinc_mmap_file
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas        27 Jun  3 17:55 wrapper_checkpoint.txt
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas       891 Jun  3 17:56 pilotlog.txt
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas        95 Jun  3 17:56 pilot_heartbeat.json
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas    393174 Jun  3 17:56 log.45006595._038828.job.log.1
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas       357 Jun  3 17:56 output.list
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas       620 Jun  3 17:56 runtime_log
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas    716800 Jun  3 17:56 result.tar.gz
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 17:56 runtime_log.err
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas       657 Jun  3 17:56 F9BNDmXpjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg4kKDmJxD7Qo.diag
[2025-06-03 17:56:02] -rw-r--r-- 1 boincer umatlas     21488 Jun  3 17:56 stderr.txt
[2025-06-03 17:56:02] HITS file was successfully produced:
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas 172988137 Jun  3 17:54 shared/HITS.pool.root.1
[2025-06-03 17:56:02]  *** Contents of shared directory: ***
[2025-06-03 17:56:02] total 378864
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas 213660652 Jun  3 16:52 ATLAS.root_0
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 16:52 start_atlas.sh
[2025-06-03 17:56:02] -rw-r--r-- 2 boincer umatlas    564117 Jun  3 16:52 input.tar.gz
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas 172988137 Jun  3 17:54 HITS.pool.root.1
[2025-06-03 17:56:02] -rw------- 1 boincer umatlas    716800 Jun  3 17:56 result.tar.gz
17:56:04 (43979): run_atlas exited; CPU time 26023.345114
17:56:04 (43979): called boinc_finish(0)

</stderr_txt>
]]>

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