Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:59 (6352): wrapper (7.7.26015): starting
06:53:59 (6352): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:53:59] Arguments: --nthreads 8
[2025-06-04 06:53:59] Threads: 8
[2025-06-04 06:53:59] Checking for CVMFS
[2025-06-04 06:53:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:54:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:54:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:54:01] 2.11.2.0 26432 32742 91828 146768 2 10 17540671 25165824 3894 130560 0 17072530 99.764 20470030 2120 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:54:01] CVMFS is ok
[2025-06-04 06:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:54:01] Checking for apptainer binary...
[2025-06-04 06:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:54:01] Running /usr/bin/apptainer --version
[2025-06-04 06:54:01] apptainer version 1.3.2-1.el7
[2025-06-04 06:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:57:34] cg-vwn331.simple-grid.lan
[2025-06-04 06:57:34] apptainer works
[2025-06-04 06:57:34] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:57:34] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:57:34] Starting ATLAS job with PandaID=6677863788
[2025-06-04 06:57:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:47:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:47:24] 2025-06-04 09:01:20,978 | INFO     | extracted standard info from prmon json
[2025-06-04 14:47:24] 2025-06-04 09:01:20,978 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:47:24] 2025-06-04 09:01:20,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:47:24] 2025-06-04 09:01:20,978 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:47:24] 2025-06-04 09:01:20,978 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:47:24] 2025-06-04 09:01:20,984 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:47:24] 2025-06-04 09:01:20,984 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,986 | INFO     | sum of deviations: 89523682411.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,987 | INFO     | mean x: 1749020642.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,987 | INFO     | mean y: 2417249.7268722467
[2025-06-04 14:47:24] 2025-06-04 09:01:20,987 | INFO     | -- intersect: -43167906503.788315
[2025-06-04 14:47:24] 2025-06-04 09:01:20,987 | INFO     | intersect: -43167906503.788315
[2025-06-04 14:47:24] 2025-06-04 09:01:20,987 | INFO     | chi2: 6.5402857913855
[2025-06-04 14:47:24] 2025-06-04 09:01:20,988 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:47:24] 2025-06-04 09:01:20,990 | INFO     | sum of deviations: 102278006887.50002
[2025-06-04 14:47:24] 2025-06-04 09:01:20,990 | INFO     | mean x: 1749020489.5
[2025-06-04 14:47:24] 2025-06-04 09:01:20,990 | INFO     | mean y: 2425372.1756756757
[2025-06-04 14:47:24] 2025-06-04 09:01:20,990 | INFO     | -- intersect: -52726463320.55425
[2025-06-04 14:47:24] 2025-06-04 09:01:20,990 | INFO     | intersect: -52726463320.55425
[2025-06-04 14:47:24] 2025-06-04 09:01:20,991 | INFO     | chi2: 5.817672351351748
[2025-06-04 14:47:24] 2025-06-04 09:01:20,991 | INFO     | current chi2=5.817672351351748 (change=11.048652353778463 %)
[2025-06-04 14:47:24] 2025-06-04 09:01:20,991 | INFO     | right removable region: 221
[2025-06-04 14:47:24] 2025-06-04 09:01:20,991 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:47:24] 2025-06-04 09:01:20,993 | INFO     | sum of deviations: 12310203514.999994
[2025-06-04 14:47:24] 2025-06-04 09:01:20,994 | INFO     | mean x: 1749020794.5
[2025-06-04 14:47:24] 2025-06-04 09:01:20,994 | INFO     | mean y: 2467428.7297297297
[2025-06-04 14:47:24] 2025-06-04 09:01:20,994 | INFO     | -- intersect: -6343994375.459139
[2025-06-04 14:47:24] 2025-06-04 09:01:20,994 | INFO     | intersect: -6343994375.459139
[2025-06-04 14:47:24] 2025-06-04 09:01:20,994 | INFO     | chi2: 1.8428931228727459
[2025-06-04 14:47:24] 2025-06-04 09:01:20,995 | INFO     | current chi2=1.8428931228727459 (change=71.8224374032691 %)
[2025-06-04 14:47:24] 2025-06-04 09:01:20,995 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,997 | INFO     | sum of deviations: -20664877890.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,997 | INFO     | mean x: 1749020947.0
[2025-06-04 14:47:24] 2025-06-04 09:01:20,997 | INFO     | mean y: 2489744.248847926
[2025-06-04 14:47:24] 2025-06-04 09:01:20,997 | INFO     | -- intersect: 11409700134.30092
[2025-06-04 14:47:24] 2025-06-04 09:01:20,997 | INFO     | intersect: 11409700134.30092
[2025-06-04 14:47:24] 2025-06-04 09:01:20,998 | INFO     | chi2: 0.8439734261825657
[2025-06-04 14:47:24] 2025-06-04 09:01:20,998 | INFO     | current chi2=0.8439734261825657 (change=54.20388650281793 %)
[2025-06-04 14:47:24] 2025-06-04 09:01:20,998 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,000 | INFO     | sum of deviations: -24755483660.999996
[2025-06-04 14:47:24] 2025-06-04 09:01:21,000 | INFO     | mean x: 1749021099.5
[2025-06-04 14:47:24] 2025-06-04 09:01:21,000 | INFO     | mean y: 2492619.5849056602
[2025-06-04 14:47:24] 2025-06-04 09:01:21,001 | INFO     | -- intersect: 14657637655.20859
[2025-06-04 14:47:24] 2025-06-04 09:01:21,001 | INFO     | intersect: 14657637655.20859
[2025-06-04 14:47:24] 2025-06-04 09:01:21,001 | INFO     | chi2: 0.8090831396990464
[2025-06-04 14:47:24] 2025-06-04 09:01:21,001 | INFO     | current chi2=0.8090831396990464 (change=4.134050362383313 %)
[2025-06-04 14:47:24] 2025-06-04 09:01:21,001 | INFO     | left removable region: 30
[2025-06-04 14:47:24] 2025-06-04 09:01:21,002 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,003 | INFO     | sum of deviations: -7589825204.000001
[2025-06-04 14:47:24] 2025-06-04 09:01:21,003 | INFO     | mean x: 1749021374.0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,004 | INFO     | mean y: 2500815.9633507854
[2025-06-04 14:47:24] 2025-06-04 09:01:21,004 | INFO     | -- intersect: 6146629032.340253
[2025-06-04 14:47:24] 2025-06-04 09:01:21,004 | INFO     | intersect: 6146629032.340253
[2025-06-04 14:47:24] 2025-06-04 09:01:21,004 | INFO     | chi2: 0.013960955454984852
[2025-06-04 14:47:24] 2025-06-04 09:01:21,004 | INFO     | -- intersect: 6146629032.340253
[2025-06-04 14:47:24] 2025-06-04 09:01:21,005 | INFO     | current memory leak: -3.51 B/s (using 191 data points, chi2=0.01)
[2025-06-04 14:47:24] 2025-06-04 09:01:21,005 | INFO     | ..............................
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . Timing measurements:
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . get job = 0 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . initial setup = 8 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . payload setup = 161 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . stage-in = 0 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . payload execution = 13968 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . stage-out = 3 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | . log creation = 1 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,006 | INFO     | ..............................
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | 
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | job summary report
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | --------------------------------------------------
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | PanDA job id: 6677863788
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | task id: 45006595
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | errors: (none)
[2025-06-04 14:47:24] 2025-06-04 09:01:21,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | pilot state: finished 
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | transexitcode: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | exeerrorcode: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | exeerrordiag: 
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | exitcode: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | exitmsg: OK
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | cpuconsumptiontime: 51343 s
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | nevents: 400
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | neventsw: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | pid: 26979
[2025-06-04 14:47:24] 2025-06-04 09:01:21,264 | INFO     | pgrp: 26979
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | corecount: 8
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | event service: False
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 13: 2405240, 24: 2405296, 35: 2405324, 45: 2405480, 56: 2405508, 67: 2405536, 78: 2405564, 84: 2405826, 88: 2406134, 14
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | --------------------------------------------------
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | 
[2025-06-04 14:47:24] 2025-06-04 09:01:21,265 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-04 14:47:24] 2025-06-04 09:01:21,330 | INFO     | 14425s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,718 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:47:24] 2025-06-04 09:01:21,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:47:24] 2025-06-04 09:01:21,720 | INFO     | job 6677863788 has completed (purged errors)
[2025-06-04 14:47:24] 2025-06-04 09:01:21,720 | INFO     | overall cleanup function is called
[2025-06-04 14:47:24] 2025-06-04 09:01:22,729 | INFO     | --- collectZombieJob: --- 10, [26979]
[2025-06-04 14:47:24] 2025-06-04 09:01:22,730 | INFO     | zombie collector waiting for pid 26979
[2025-06-04 14:47:24] 2025-06-04 09:01:22,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:47:24] 2025-06-04 09:01:22,730 | INFO     | collected zombie processes
[2025-06-04 14:47:24] 2025-06-04 09:01:22,730 | INFO     | will attempt to kill all subprocesses of pid=26979
[2025-06-04 14:47:24] 2025-06-04 09:01:22,875 | INFO     | process IDs to be killed: [26979] (in reverse order)
[2025-06-04 14:47:24] 2025-06-04 09:01:23,517 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:47:24] 2025-06-04 09:01:23,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:47:24] 2025-06-04 09:01:23,521 | INFO     | did not find any defunct processes belonging to 26979
[2025-06-04 14:47:24] 2025-06-04 09:01:23,524 | INFO     | did not find any defunct processes belonging to 26979
[2025-06-04 14:47:24] 2025-06-04 09:01:23,525 | INFO     | ready for new job
[2025-06-04 14:47:24] 2025-06-04 09:01:23,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:47:24] 2025-06-04 09:01:23,527 | INFO     | **************************************
[2025-06-04 14:47:24] 2025-06-04 09:01:23,527 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:47:24] 2025-06-04 09:01:23,527 | INFO     | **************************************
[2025-06-04 14:47:24] 2025-06-04 09:01:23,532 | INFO     | 
[2025-06-04 14:47:24] 2025-06-04 09:01:23,532 | INFO     | pilot is running in a VM
[2025-06-04 14:47:24] 2025-06-04 09:01:23,533 | INFO     | architecture information:
[2025-06-04 14:47:24] 2025-06-04 09:01:23,540 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:47:24] 2025-06-04 09:01:23,663 | INFO     | cat /etc/os-release:
[2025-06-04 14:47:24] NAME="CentOS Linux"
[2025-06-04 14:47:24] VERSION="7 (Core)"
[2025-06-04 14:47:24] ID="centos"
[2025-06-04 14:47:24] ID_LIKE="rhel fedora"
[2025-06-04 14:47:24] VERSION_ID="7"
[2025-06-04 14:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:47:24] ANSI_COLOR="0;31"
[2025-06-04 14:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:47:24] HOME_URL="https://www.centos.org/"
[2025-06-04 14:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:47:24] 
[2025-06-04 14:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:47:24] 
[2025-06-04 14:47:24] 2025-06-04 09:01:23,664 | INFO     | **************************************
[2025-06-04 14:47:24] 2025-06-04 09:01:24,167 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-04 14:47:24] 2025-06-04 09:01:24,342 | INFO     | sufficient remaining disk space (497149804544 B)
[2025-06-04 14:47:24] 2025-06-04 09:01:24,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:47:24] 2025-06-04 09:01:24,343 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:47:24] 2025-06-04 09:01:24,343 | INFO     | update_server=False
[2025-06-04 14:47:24] 2025-06-04 09:01:24,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:47:24] 2025-06-04 09:01:24,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:47:24] 2025-06-04 09:01:24,344 | INFO     | aborting loop
[2025-06-04 14:47:24] 2025-06-04 09:01:24,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:47:24] 2025-06-04 09:01:24,349 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:47:24] 2025-06-04 09:01:24,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:47:24] 2025-06-04 09:01:24,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:47:24] 2025-06-04 09:01:25,323 | INFO     | all data control threads have been joined
[2025-06-04 14:47:24] 2025-06-04 09:01:25,350 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:25,350 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:25,384 | INFO     | all job control threads have been joined
[2025-06-04 14:47:24] 2025-06-04 09:01:25,482 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:25,503 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:25,593 | INFO     | all payload control threads have been joined
[2025-06-04 14:47:24] 2025-06-04 09:01:25,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:47:24] 2025-06-04 09:01:25,999 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:47:24] 2025-06-04 09:01:26,197 | INFO     | [job] validate thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,330 | INFO     | [data] control thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,352 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,391 | INFO     | [job] control thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,600 | INFO     | [payload] control thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,667 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,691 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:26,840 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:27,193 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:29,763 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:47:24] 2025-06-04 09:01:29,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714128717632)>', '<ExcThread(monitor, started 139713449019136)>']
[2025-06-04 14:47:24] 2025-06-04 09:01:30,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:47:24] 2025-06-04 09:01:30,383 | INFO     | [monitor] control thread has ended
[2025-06-04 14:47:24] 2025-06-04 09:01:34,845 | INFO     | all workflow threads have been joined
[2025-06-04 14:47:24] 2025-06-04 09:01:34,846 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:47:24] 2025-06-04 09:01:34,846 | INFO     | traces error code: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:34,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:47:24] 2025-06-04 09:01:35,299 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:47:24] 2025-06-04 09:01:35,393 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:47:24] 2025-06-04 09:01:35,496 [wrapper] pilotpid: 16450
[2025-06-04 14:47:24] 2025-06-04 09:01:35,628 [wrapper] Pilot exit status: 0
[2025-06-04 14:47:24] 2025-06-04 09:01:36,076 [wrapper] pandaids: 6677863788
[2025-06-04 14:47:24] 2025-06-04 09:01:37,147 [wrapper] cleanup supervisor_pilot 17925 16451
[2025-06-04 14:47:24] 2025-06-04 09:01:37,252 [wrapper] Test setup, not cleaning
[2025-06-04 14:47:24] 2025-06-04 09:01:37,366 [wrapper] apfmon messages muted
[2025-06-04 14:47:24] 2025-06-04 09:01:37,460 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:47:24] 2025-06-04 09:01:37,529 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:47:24]  *** Error codes and diagnostics ***
[2025-06-04 14:47:24]     "exeErrorCode": 0,
[2025-06-04 14:47:24]     "exeErrorDiag": "",
[2025-06-04 14:47:24]     "pilotErrorCode": 0,
[2025-06-04 14:47:24]     "pilotErrorDiag": "",
[2025-06-04 14:47:24]  *** Listing of results directory ***
[2025-06-04 14:47:24] total 394064
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:25 queuedata.json
[2025-06-04 14:47:24] -rwx------. 1 boinc boinc     37140 Jun  3 19:26 runpilot2-wrapper.sh
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:47:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:53 run_atlas
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:53 job.xml
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc 213384267 Jun  4 06:53 EVNT.45006593._001627.pool.root.1
[2025-06-04 14:47:24] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:53 shared
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc    508881 Jun  4 06:53 input.tar.gz
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc      6390 Jun  4 06:53 init_data.xml
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:53 boinc_lockfile
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:57 pandaJob.out
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc    986745 Jun  4 07:00 agis_schedconf.cvmfs.json
[2025-06-04 14:47:24] drwx------. 4 boinc boinc      4096 Jun  4 07:01 pilot3
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc 183054754 Jun  4 10:58 HITS.45006595._040615.pool.root.1
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:58 boinc_task_state.xml
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc      1017 Jun  4 10:59 memory_monitor_summary.json
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc   1603667 Jun  4 10:59 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc    399714 Jun  4 10:59 log.45006595._040615.job.log.tgz.1
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc        95 Jun  4 11:00 pilot_heartbeat.json
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc      7694 Jun  4 11:01 heartbeat.json
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc      4416 Jun  4 11:01 pilotlog.txt
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc   1231007 Jun  4 11:01 log.45006595._040615.job.log.1
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc       357 Jun  4 11:01 output.list
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:01 runtime_log
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc   1648640 Jun  4 11:01 result.tar.gz
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc      8659 Jun  4 11:01 runtime_log.err
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc       657 Jun  4 11:01 gGKODmRakg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQOlKDmoMAWWo.diag
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc      8192 Jun  4 14:47 boinc_mmap_file
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc        28 Jun  4 14:47 wrapper_checkpoint.txt
[2025-06-04 14:47:24] -rw-r--r--. 1 boinc boinc     20502 Jun  4 14:47 stderr.txt
[2025-06-04 14:47:24] HITS file was successfully produced:
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc 183054754 Jun  4 10:58 shared/HITS.pool.root.1
[2025-06-04 14:47:24]  *** Contents of shared directory: ***
[2025-06-04 14:47:24] total 389280
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc 213384267 Jun  4 06:53 ATLAS.root_0
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc    508881 Jun  4 06:53 input.tar.gz
[2025-06-04 14:47:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc 183054754 Jun  4 10:58 HITS.pool.root.1
[2025-06-04 14:47:24] -rw-------. 1 boinc boinc   1648640 Jun  4 11:01 result.tar.gz
14:47:26 (6352): run_atlas exited; CPU time 51545.053412
14:47:26 (6352): called boinc_finish(0)

</stderr_txt>
]]>

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