Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:22:03 (3616493): wrapper (7.7.26015): starting
05:22:03 (3616493): wrapper: running run_atlas (--nthreads 3)
[2025-06-05 05:22:03] Arguments: --nthreads 3
[2025-06-05 05:22:03] Threads: 3
[2025-06-05 05:22:03] Checking for CVMFS
[2025-06-05 05:22:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:22:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:22:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:22:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:22:03] 2.11.5.0 3563720 233 56704 146793 3 55 24476534 31457280 0 130560 0 143484 99.986 76615 106 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-05 05:22:03] CVMFS is ok
[2025-06-05 05:22:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:22:03] Checking for apptainer binary...
[2025-06-05 05:22:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 05:22:03] Running /usr/bin/apptainer --version
[2025-06-05 05:22:03] apptainer version 1.3.4-1.el9
[2025-06-05 05:22:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:22:03] testio001
[2025-06-05 05:22:03] apptainer works
[2025-06-05 05:22:03] Set ATHENA_PROC_NUMBER=3
[2025-06-05 05:22:03] Set ATHENA_CORE_NUMBER=3
[2025-06-05 05:22:03] Starting ATLAS job with PandaID=6677976625
[2025-06-05 05:22:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 07:16:28]  *** The last 200 lines of the pilot log: ***
[2025-06-05 07:16:28] 2025-06-04 22:16:14,330 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6677976625/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,331 | INFO     | extracted standard info from prmon json
[2025-06-05 07:16:28] 2025-06-04 22:16:14,331 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 07:16:28] 2025-06-04 22:16:14,331 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 07:16:28] 2025-06-04 22:16:14,331 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 07:16:28] 2025-06-04 22:16:14,331 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 07:16:28] 2025-06-04 22:16:14,332 | INFO     | fitting pss+swap vs Time
[2025-06-05 07:16:28] 2025-06-04 22:16:14,332 | INFO     | sum of square deviations: 424045160.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | sum of deviations: 12069610121.000013
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | mean x: 1749071910.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | mean y: 2390333.378378378
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | -- intersect: -49781495956.68758
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | intersect: -49781495956.68758
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | chi2: 3.8122750627673727
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | sum of square deviations: 369281342.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | sum of deviations: 12984546040.49999
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | mean x: 1749071757.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | mean y: 2392881.2735849055
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | -- intersect: -61497878455.605515
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | intersect: -61497878455.605515
[2025-06-05 07:16:28] 2025-06-04 22:16:14,333 | INFO     | chi2: 3.815957567034116
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | current chi2=3.815957567034116 (change=-0.09659597500475911 %)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | right removable region: 105
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | sum of square deviations: 369281342.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | sum of deviations: -11627543151.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | mean x: 1749072062.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | mean y: 2455922.1226415094
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | -- intersect: 55075400425.95133
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | intersect: 55075400425.95133
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | chi2: 1.4215557401552585
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | current chi2=1.4215557401552585 (change=62.7110920185456 %)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,334 | INFO     | sum of square deviations: 319447850.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | sum of deviations: -28011227816.000004
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | mean x: 1749072215.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | mean y: 2506074.2673267326
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | -- intersect: 153372329289.54562
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | intersect: 153372329289.54562
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | chi2: 0.2467023414356255
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | current chi2=0.2467023414356255 (change=82.64560899956822 %)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | sum of square deviations: 274312120.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | sum of deviations: -27060058628.500004
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | mean x: 1749072367.5
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | mean y: 2502606.0104166665
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | -- intersect: 172543186590.51428
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | intersect: 172543186590.51428
[2025-06-05 07:16:28] 2025-06-04 22:16:14,335 | INFO     | chi2: 0.18708655569299795
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | current chi2=0.18708655569299795 (change=24.16506685575325 %)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | left removable region: 30
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | sum of square deviations: 130793150.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | sum of deviations: -14957068118.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | mean x: 1749072642.0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | mean y: 2468643.8933333335
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | -- intersect: 200020578535.1547
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | intersect: 200020578535.1547
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | chi2: 0.16868234229738843
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | -- intersect: 200020578535.1547
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | current memory leak: -114.36 B/s (using 75 data points, chi2=0.17)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | ..............................
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | . Timing measurements:
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | . get job = 0 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,336 | INFO     | . initial setup = 8 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | . payload setup = 2 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | . stage-in = 0 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | . payload execution = 6737 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | . stage-out = 0 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | . log creation = 0 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,337 | INFO     | ..............................
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | 
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | job summary report
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | --------------------------------------------------
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | PanDA job id: 6677976625
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | task id: 45006595
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | errors: (none)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | pilot state: finished 
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | transexitcode: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | exeerrorcode: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | exeerrordiag: 
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | exitcode: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | exitmsg: OK
[2025-06-05 07:16:28] 2025-06-04 22:16:14,810 | INFO     | cpuconsumptiontime: 16879 s
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | nevents: 400
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | neventsw: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | pid: 3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | pgrp: 3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | corecount: 3
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | event service: False
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | sizes: {0: 2396514, 1: 2397370, 3: 2397576, 11: 2397604, 6744: 2424566, 6745: 2433507, 6747: 2433691, 6826: 2433861}
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | --------------------------------------------------
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | 
[2025-06-05 07:16:28] 2025-06-04 22:16:14,811 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-05 07:16:28] 2025-06-04 22:16:14,820 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,820 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | job 6677976625 has completed (purged errors)
[2025-06-05 07:16:28] 2025-06-04 22:16:14,821 | INFO     | overall cleanup function is called
[2025-06-05 07:16:28] 2025-06-04 22:16:15,827 | INFO     | --- collectZombieJob: --- 10, [3626420]
[2025-06-05 07:16:28] 2025-06-04 22:16:15,827 | INFO     | zombie collector waiting for pid 3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:15,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 07:16:28] 2025-06-04 22:16:15,827 | INFO     | collected zombie processes
[2025-06-05 07:16:28] 2025-06-04 22:16:15,827 | INFO     | will attempt to kill all subprocesses of pid=3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:15,860 | INFO     | process IDs to be killed: [3626420] (in reverse order)
[2025-06-05 07:16:28] 2025-06-04 22:16:15,878 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 07:16:28] 2025-06-04 22:16:15,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 07:16:28] 2025-06-04 22:16:15,880 | INFO     | did not find any defunct processes belonging to 3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:15,881 | INFO     | did not find any defunct processes belonging to 3626420
[2025-06-05 07:16:28] 2025-06-04 22:16:15,881 | INFO     | ready for new job
[2025-06-05 07:16:28] 2025-06-04 22:16:15,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 07:16:28] 2025-06-04 22:16:15,882 | INFO     | **************************************
[2025-06-05 07:16:28] 2025-06-04 22:16:15,882 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 07:16:28] 2025-06-04 22:16:15,882 | INFO     | **************************************
[2025-06-05 07:16:28] 2025-06-04 22:16:15,882 | INFO     | 
[2025-06-05 07:16:28] 2025-06-04 22:16:15,894 | INFO     | architecture information:
[2025-06-05 07:16:28] 2025-06-04 22:16:15,894 | INFO     | executing command: cat /etc/os-release
[2025-06-05 07:16:28] 2025-06-04 22:16:15,901 | INFO     | cat /etc/os-release:
[2025-06-05 07:16:28] NAME="CentOS Linux"
[2025-06-05 07:16:28] VERSION="7 (Core)"
[2025-06-05 07:16:28] ID="centos"
[2025-06-05 07:16:28] ID_LIKE="rhel fedora"
[2025-06-05 07:16:28] VERSION_ID="7"
[2025-06-05 07:16:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 07:16:28] ANSI_COLOR="0;31"
[2025-06-05 07:16:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 07:16:28] HOME_URL="https://www.centos.org/"
[2025-06-05 07:16:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 07:16:28] 
[2025-06-05 07:16:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 07:16:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 07:16:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 07:16:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 07:16:28] 
[2025-06-05 07:16:28] 2025-06-04 22:16:15,902 | INFO     | **************************************
[2025-06-05 07:16:28] 2025-06-04 22:16:16,404 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-05 07:16:28] 2025-06-04 22:16:16,412 | INFO     | sufficient remaining disk space (126975213568 B)
[2025-06-05 07:16:28] 2025-06-04 22:16:16,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | INFO     | update_server=False
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | INFO     | aborting loop
[2025-06-05 07:16:28] 2025-06-04 22:16:16,413 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 07:16:28] 2025-06-04 22:16:16,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 07:16:28] 2025-06-04 22:16:16,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 07:16:28] 2025-06-04 22:16:16,620 | INFO     | all data control threads have been joined
[2025-06-05 07:16:28] 2025-06-04 22:16:16,728 | INFO     | all job control threads have been joined
[2025-06-05 07:16:28] 2025-06-04 22:16:17,240 | INFO     | all payload control threads have been joined
[2025-06-05 07:16:28] 2025-06-04 22:16:17,418 | INFO     | [job] retrieve thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:17,418 | INFO     | [job] job monitor thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:17,625 | INFO     | [data] control thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:17,659 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 07:16:28] 2025-06-04 22:16:17,733 | INFO     | [job] control thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:17,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:17,866 | INFO     | [payload] failed_post thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,242 | INFO     | [payload] control thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,418 | INFO     | [data] copytool_out thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,462 | INFO     | [payload] validate_post thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,709 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,758 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,829 | INFO     | [job] validate thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,838 | INFO     | [data] copytool_in thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:18,865 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:19,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 07:16:28] 2025-06-04 22:16:20,390 | INFO     | [job] queue monitor thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:21,664 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 07:16:28] 2025-06-04 22:16:23,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852214318912)>', '<ExcThread(monitor, started 139851584239360)>']
[2025-06-05 07:16:28] 2025-06-04 22:16:24,449 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 07:16:28] 2025-06-04 22:16:24,449 | INFO     | [monitor] control thread has ended
[2025-06-05 07:16:28] 2025-06-04 22:16:28,538 | INFO     | all workflow threads have been joined
[2025-06-05 07:16:28] 2025-06-04 22:16:28,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 07:16:28] 2025-06-04 22:16:28,538 | INFO     | traces error code: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:28,538 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 07:16:28] 2025-06-04 22:16:28,597 [wrapper] ==== pilot stdout END ====
[2025-06-05 07:16:28] 2025-06-04 22:16:28,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 07:16:28] 2025-06-04 22:16:28,600 [wrapper] pilotpid: 3620078
[2025-06-05 07:16:28] 2025-06-04 22:16:28,602 [wrapper] Pilot exit status: 0
[2025-06-05 07:16:28] 2025-06-04 22:16:28,608 [wrapper] pandaids: 6677976625
[2025-06-05 07:16:28] 2025-06-04 22:16:28,618 [wrapper] cleanup supervisor_pilot 3640162 3620079
[2025-06-05 07:16:28] 2025-06-04 22:16:28,620 [wrapper] Test setup, not cleaning
[2025-06-05 07:16:28] 2025-06-04 22:16:28,621 [wrapper] apfmon messages muted
[2025-06-05 07:16:28] 2025-06-04 22:16:28,623 [wrapper] ==== wrapper stdout END ====
[2025-06-05 07:16:28] 2025-06-04 22:16:28,624 [wrapper] ==== wrapper stderr END ====
[2025-06-05 07:16:28]  *** Error codes and diagnostics ***
[2025-06-05 07:16:28]     "exeErrorCode": 0,
[2025-06-05 07:16:28]     "exeErrorDiag": "",
[2025-06-05 07:16:28]     "pilotErrorCode": 0,
[2025-06-05 07:16:28]     "pilotErrorDiag": "",
[2025-06-05 07:16:28]  *** Listing of results directory ***
[2025-06-05 07:16:28] total 390344
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc    495897 Jun  4 03:57 pilot3.tar.gz
[2025-06-05 07:16:28] -rwx------. 1 boinc boinc     37140 Jun  4 04:07 runpilot2-wrapper.sh
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc      5111 Jun  4 04:07 queuedata.json
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc       100 Jun  5 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 07:16:28] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 05:22 run_atlas
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc       105 Jun  5 05:22 job.xml
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc      9292 Jun  5 05:22 init_data.xml
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc 215827880 Jun  5 05:22 EVNT.45006593._001738.pool.root.1
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:22 start_atlas.sh
[2025-06-05 07:16:28] drwxrwx--x. 2 boinc boinc        68 Jun  5 05:22 shared
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc    508875 Jun  5 05:22 input.tar.gz
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc         0 Jun  5 05:22 boinc_lockfile
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc      2525 Jun  5 05:22 pandaJob.out
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc    987032 Jun  5 05:22 agis_schedconf.cvmfs.json
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc   1598969 Jun  5 05:22 agis_ddmendpoints.agis.ALL.json
[2025-06-05 07:16:28] drwx------. 4 boinc boinc      4096 Jun  5 05:22 pilot3
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc 178358187 Jun  5 07:14 HITS.45006595._043351.pool.root.1
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc       529 Jun  5 07:14 boinc_task_state.xml
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc      1016 Jun  5 07:14 memory_monitor_summary.json
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc    234649 Jun  5 07:14 log.45006595._043351.job.log.tgz.1
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc        96 Jun  5 07:15 pilot_heartbeat.json
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc      7668 Jun  5 07:16 heartbeat.json
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc        27 Jun  5 07:16 wrapper_checkpoint.txt
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc      8192 Jun  5 07:16 boinc_mmap_file
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc      4477 Jun  5 07:16 pilotlog.txt
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc    614025 Jun  5 07:16 log.45006595._043351.job.log.1
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc       357 Jun  5 07:16 output.list
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc       620 Jun  5 07:16 runtime_log
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc    870400 Jun  5 07:16 result.tar.gz
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc       644 Jun  5 07:16 z1xLDmr9lg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLfZKDmFSJlAn.diag
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc      8617 Jun  5 07:16 runtime_log.err
[2025-06-05 07:16:28] -rw-r--r--. 1 boinc boinc     20545 Jun  5 07:16 stderr.txt
[2025-06-05 07:16:28] HITS file was successfully produced:
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc 178358187 Jun  5 07:14 shared/HITS.pool.root.1
[2025-06-05 07:16:28]  *** Contents of shared directory: ***
[2025-06-05 07:16:28] total 386320
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc 215827880 Jun  5 05:22 ATLAS.root_0
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc     15093 Jun  5 05:22 start_atlas.sh
[2025-06-05 07:16:28] -rw-r--r--. 2 boinc boinc    508875 Jun  5 05:22 input.tar.gz
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc 178358187 Jun  5 07:14 HITS.pool.root.1
[2025-06-05 07:16:28] -rw-------. 1 boinc boinc    870400 Jun  5 07:16 result.tar.gz
07:16:30 (3616493): run_atlas exited; CPU time 16905.889107
07:16:30 (3616493): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN