Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:04 (4869): wrapper (7.7.26015): starting
06:49:04 (4869): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:49:04] Arguments: --nthreads 8
[2025-06-04 06:49:04] Threads: 8
[2025-06-04 06:49:04] Checking for CVMFS
[2025-06-04 06:49:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:49:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:49:07] 2.11.2.0 6418 32761 94376 146767 0 60 22841316 25165824 4276 130560 0 17057620 99.741 20585328 2184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:49:07] CVMFS is ok
[2025-06-04 06:49:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:49:07] Checking for apptainer binary...
[2025-06-04 06:49:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:49:07] Running /usr/bin/apptainer --version
[2025-06-04 06:49:07] apptainer version 1.3.2-1.el7
[2025-06-04 06:49:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:49:11] cg-vwn357.simple-grid.lan
[2025-06-04 06:49:11] apptainer works
[2025-06-04 06:49:12] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:49:12] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:49:12] Starting ATLAS job with PandaID=6677864289
[2025-06-04 06:49:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:07:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:07:12] 2025-06-04 08:43:34,536 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:07:12] 2025-06-04 08:43:34,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:07:12] 2025-06-04 08:43:34,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:07:12] 2025-06-04 08:43:34,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:07:12] 2025-06-04 08:43:34,541 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:07:12] 2025-06-04 08:43:34,542 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | sum of deviations: 87129239711.99997
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | mean x: 1749019889.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | mean y: 2410381.5779816513
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | -- intersect: -47434883516.49053
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | intersect: -47434883516.49053
[2025-06-04 13:07:12] 2025-06-04 08:43:34,544 | INFO     | chi2: 5.791200365998638
[2025-06-04 13:07:12] 2025-06-04 08:43:34,545 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | sum of deviations: 98962943557.00003
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | mean x: 1749019737.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | mean y: 2418548.3145539905
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | -- intersect: -57761899846.92847
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | intersect: -57761899846.92847
[2025-06-04 13:07:12] 2025-06-04 08:43:34,547 | INFO     | chi2: 5.062544744042455
[2025-06-04 13:07:12] 2025-06-04 08:43:34,548 | INFO     | current chi2=5.062544744042455 (change=12.582117279765944 %)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,548 | INFO     | right removable region: 212
[2025-06-04 13:07:12] 2025-06-04 08:43:34,548 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,550 | INFO     | sum of deviations: 16586117343.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,550 | INFO     | mean x: 1749020042.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,550 | INFO     | mean y: 2460119.244131455
[2025-06-04 13:07:12] 2025-06-04 08:43:34,550 | INFO     | -- intersect: -9678799307.566776
[2025-06-04 13:07:12] 2025-06-04 08:43:34,550 | INFO     | intersect: -9678799307.566776
[2025-06-04 13:07:12] 2025-06-04 08:43:34,551 | INFO     | chi2: 1.5620591401311958
[2025-06-04 13:07:12] 2025-06-04 08:43:34,551 | INFO     | current chi2=1.5620591401311958 (change=73.02702304512937 %)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,551 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,558 | INFO     | sum of deviations: -8721707318.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,558 | INFO     | mean x: 1749020194.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,558 | INFO     | mean y: 2478677.668269231
[2025-06-04 13:07:12] 2025-06-04 08:43:34,558 | INFO     | -- intersect: 5469338549.250395
[2025-06-04 13:07:12] 2025-06-04 08:43:34,558 | INFO     | intersect: 5469338549.250395
[2025-06-04 13:07:12] 2025-06-04 08:43:34,559 | INFO     | chi2: 0.8097320961149882
[2025-06-04 13:07:12] 2025-06-04 08:43:34,559 | INFO     | current chi2=0.8097320961149882 (change=48.16251988724451 %)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,559 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | sum of deviations: -7253508048.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | mean x: 1749020347.0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | mean y: 2477549.960591133
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | -- intersect: 4893357020.314905
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | intersect: 4893357020.314905
[2025-06-04 13:07:12] 2025-06-04 08:43:34,561 | INFO     | chi2: 0.793685096514738
[2025-06-04 13:07:12] 2025-06-04 08:43:34,562 | INFO     | current chi2=0.793685096514738 (change=1.981766522191983 %)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,562 | INFO     | left removable region: 30
[2025-06-04 13:07:12] 2025-06-04 08:43:34,562 | INFO     | sum of square deviations: 1869302025.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,563 | INFO     | sum of deviations: 2824412911.0000005
[2025-06-04 13:07:12] 2025-06-04 08:43:34,563 | INFO     | mean x: 1749020621.5
[2025-06-04 13:07:12] 2025-06-04 08:43:34,563 | INFO     | mean y: 2490650.6703296704
[2025-06-04 13:07:12] 2025-06-04 08:43:34,564 | INFO     | -- intersect: -2640183651.0645695
[2025-06-04 13:07:12] 2025-06-04 08:43:34,564 | INFO     | intersect: -2640183651.0645695
[2025-06-04 13:07:12] 2025-06-04 08:43:34,564 | INFO     | chi2: 0.000464629466286382
[2025-06-04 13:07:12] 2025-06-04 08:43:34,564 | INFO     | -- intersect: -2640183651.0645695
[2025-06-04 13:07:12] 2025-06-04 08:43:34,564 | INFO     | current memory leak: 1.51 B/s (using 182 data points, chi2=0.00)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,565 | INFO     | ..............................
[2025-06-04 13:07:12] 2025-06-04 08:43:34,565 | INFO     | . Timing measurements:
[2025-06-04 13:07:12] 2025-06-04 08:43:34,565 | INFO     | . get job = 0 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,565 | INFO     | . initial setup = 11 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | . payload setup = 173 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | . stage-in = 0 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | . payload execution = 13390 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | . stage-out = 6 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | . log creation = 1 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,566 | INFO     | ..............................
[2025-06-04 13:07:12] 2025-06-04 08:43:34,747 | INFO     | 
[2025-06-04 13:07:12] 2025-06-04 08:43:34,747 | INFO     | job summary report
[2025-06-04 13:07:12] 2025-06-04 08:43:34,747 | INFO     | --------------------------------------------------
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | PanDA job id: 6677864289
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | task id: 45006595
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | errors: (none)
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | pilot state: finished 
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | transexitcode: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | exeerrorcode: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | exeerrordiag: 
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | exitcode: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | exitmsg: OK
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | cpuconsumptiontime: 49103 s
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | nevents: 400
[2025-06-04 13:07:12] 2025-06-04 08:43:34,748 | INFO     | neventsw: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | pid: 25575
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | pgrp: 25575
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | corecount: 8
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | event service: False
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | sizes: {0: 2404354, 1: 2405040, 2: 2405239, 12: 2405239, 23: 2405267, 34: 2405295, 45: 2405451, 55: 2405479, 66: 2405507, 77: 2405535, 86: 2405797, 88: 2406105, 13
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | --------------------------------------------------
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | 
[2025-06-04 13:07:12] 2025-06-04 08:43:34,749 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-04 13:07:12] 2025-06-04 08:43:35,273 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,273 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,273 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,274 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | job 6677864289 has completed (purged errors)
[2025-06-04 13:07:12] 2025-06-04 08:43:35,275 | INFO     | overall cleanup function is called
[2025-06-04 13:07:12] 2025-06-04 08:43:35,875 | INFO     | PID=12868 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 13:07:12] 2025-06-04 08:43:35,875 | INFO     | .. there are 9 such processes running
[2025-06-04 13:07:12] 2025-06-04 08:43:36,285 | INFO     | --- collectZombieJob: --- 10, [25575]
[2025-06-04 13:07:12] 2025-06-04 08:43:36,286 | INFO     | zombie collector waiting for pid 25575
[2025-06-04 13:07:12] 2025-06-04 08:43:36,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:07:12] 2025-06-04 08:43:36,286 | INFO     | collected zombie processes
[2025-06-04 13:07:12] 2025-06-04 08:43:36,286 | INFO     | will attempt to kill all subprocesses of pid=25575
[2025-06-04 13:07:12] 2025-06-04 08:43:36,415 | INFO     | process IDs to be killed: [25575] (in reverse order)
[2025-06-04 13:07:12] 2025-06-04 08:43:37,153 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:07:12] 2025-06-04 08:43:37,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:07:12] 2025-06-04 08:43:37,157 | INFO     | did not find any defunct processes belonging to 25575
[2025-06-04 13:07:12] 2025-06-04 08:43:37,160 | INFO     | did not find any defunct processes belonging to 25575
[2025-06-04 13:07:12] 2025-06-04 08:43:37,161 | INFO     | ready for new job
[2025-06-04 13:07:12] 2025-06-04 08:43:37,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:07:12] 2025-06-04 08:43:37,163 | INFO     | **************************************
[2025-06-04 13:07:12] 2025-06-04 08:43:37,163 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:07:12] 2025-06-04 08:43:37,163 | INFO     | **************************************
[2025-06-04 13:07:12] 2025-06-04 08:43:37,164 | INFO     | 
[2025-06-04 13:07:12] 2025-06-04 08:43:37,164 | INFO     | pilot is running in a VM
[2025-06-04 13:07:12] 2025-06-04 08:43:37,164 | INFO     | architecture information:
[2025-06-04 13:07:12] 2025-06-04 08:43:37,165 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:07:12] 2025-06-04 08:43:37,276 | INFO     | cat /etc/os-release:
[2025-06-04 13:07:12] NAME="CentOS Linux"
[2025-06-04 13:07:12] VERSION="7 (Core)"
[2025-06-04 13:07:12] ID="centos"
[2025-06-04 13:07:12] ID_LIKE="rhel fedora"
[2025-06-04 13:07:12] VERSION_ID="7"
[2025-06-04 13:07:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:07:12] ANSI_COLOR="0;31"
[2025-06-04 13:07:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:07:12] HOME_URL="https://www.centos.org/"
[2025-06-04 13:07:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:07:12] 
[2025-06-04 13:07:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:07:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:07:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:07:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:07:12] 
[2025-06-04 13:07:12] 2025-06-04 08:43:37,277 | INFO     | **************************************
[2025-06-04 13:07:12] 2025-06-04 08:43:37,781 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-04 13:07:12] 2025-06-04 08:43:37,884 | INFO     | sufficient remaining disk space (496982032384 B)
[2025-06-04 13:07:12] 2025-06-04 08:43:37,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:07:12] 2025-06-04 08:43:37,885 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:07:12] 2025-06-04 08:43:37,885 | INFO     | update_server=False
[2025-06-04 13:07:12] 2025-06-04 08:43:37,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:07:12] 2025-06-04 08:43:37,888 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:07:12] 2025-06-04 08:43:37,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:07:12] 2025-06-04 08:43:37,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:07:12] 2025-06-04 08:43:37,975 | INFO     | all data control threads have been joined
[2025-06-04 13:07:12] 2025-06-04 08:43:38,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:07:12] 2025-06-04 08:43:38,328 | INFO     | aborting loop
[2025-06-04 13:07:12] 2025-06-04 08:43:38,891 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:38,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:07:12] 2025-06-04 08:43:38,983 | INFO     | [data] control thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,046 | INFO     | all job control threads have been joined
[2025-06-04 13:07:12] 2025-06-04 08:43:39,067 | INFO     | all payload control threads have been joined
[2025-06-04 13:07:12] 2025-06-04 08:43:39,103 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,301 | INFO     | [job] validate thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,334 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,501 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,504 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,507 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:39,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:07:12] 2025-06-04 08:43:40,053 | INFO     | [job] control thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:40,074 | INFO     | [payload] control thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:40,117 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:40,355 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:40,768 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:40,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:07:12] 2025-06-04 08:43:40,915 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:44,793 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:07:12] 2025-06-04 08:43:46,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139787082069824)>', '<ExcThread(monitor, started 139786236958464)>']
[2025-06-04 13:07:12] 2025-06-04 08:43:46,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:07:12] 2025-06-04 08:43:46,939 | INFO     | [monitor] control thread has ended
[2025-06-04 13:07:12] 2025-06-04 08:43:51,748 | INFO     | all workflow threads have been joined
[2025-06-04 13:07:12] 2025-06-04 08:43:51,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:07:12] 2025-06-04 08:43:51,749 | INFO     | traces error code: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:51,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:07:12] 2025-06-04 08:43:51,994 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:07:12] 2025-06-04 08:43:52,008 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:07:12] 2025-06-04 08:43:52,016 [wrapper] pilotpid: 12868
[2025-06-04 13:07:12] 2025-06-04 08:43:52,044 [wrapper] Pilot exit status: 0
[2025-06-04 13:07:12] 2025-06-04 08:43:52,126 [wrapper] pandaids: 6677864289
[2025-06-04 13:07:12] 2025-06-04 08:43:52,170 [wrapper] cleanup supervisor_pilot 20187 12869
[2025-06-04 13:07:12] 2025-06-04 08:43:52,177 [wrapper] Test setup, not cleaning
[2025-06-04 13:07:12] 2025-06-04 08:43:52,189 [wrapper] apfmon messages muted
[2025-06-04 13:07:12] 2025-06-04 08:43:52,302 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:07:12] 2025-06-04 08:43:52,420 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:07:12]  *** Error codes and diagnostics ***
[2025-06-04 13:07:12]     "exeErrorCode": 0,
[2025-06-04 13:07:12]     "exeErrorDiag": "",
[2025-06-04 13:07:12]     "pilotErrorCode": 0,
[2025-06-04 13:07:12]     "pilotErrorDiag": "",
[2025-06-04 13:07:12]  *** Listing of results directory ***
[2025-06-04 13:07:12] total 387144
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 13:07:12] -rwx------. 1 boinc boinc     37140 Jun  3 19:55 runpilot2-wrapper.sh
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:55 queuedata.json
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:07:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:49 run_atlas
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:49 job.xml
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc      6393 Jun  4 06:49 init_data.xml
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc 213509189 Jun  4 06:49 EVNT.45006593._001646.pool.root.1
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:49 start_atlas.sh
[2025-06-04 13:07:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:49 shared
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc    508878 Jun  4 06:49 input.tar.gz
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:49 boinc_lockfile
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc      2524 Jun  4 06:49 pandaJob.out
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc    986745 Jun  4 06:52 agis_schedconf.cvmfs.json
[2025-06-04 13:07:12] drwx------. 4 boinc boinc      4096 Jun  4 06:52 pilot3
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc 175971257 Jun  4 10:40 HITS.45006595._041070.pool.root.1
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:40 boinc_task_state.xml
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc      1018 Jun  4 10:41 memory_monitor_summary.json
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc   1603667 Jun  4 10:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc    371932 Jun  4 10:42 log.45006595._041070.job.log.tgz.1
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc        95 Jun  4 10:42 pilot_heartbeat.json
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc      7691 Jun  4 10:43 heartbeat.json
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc      4417 Jun  4 10:43 pilotlog.txt
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc   1192821 Jun  4 10:43 log.45006595._041070.job.log.1
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc       357 Jun  4 10:43 output.list
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:43 runtime_log
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc   1587200 Jun  4 10:43 result.tar.gz
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc      8673 Jun  4 10:43 runtime_log.err
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc       657 Jun  4 10:43 1lVLDmD2kg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLTZKDmpitXSo.diag
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc      8192 Jun  4 13:07 boinc_mmap_file
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc        28 Jun  4 13:07 wrapper_checkpoint.txt
[2025-06-04 13:07:12] -rw-r--r--. 1 boinc boinc     20581 Jun  4 13:07 stderr.txt
[2025-06-04 13:07:12] HITS file was successfully produced:
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc 175971257 Jun  4 10:40 shared/HITS.pool.root.1
[2025-06-04 13:07:12]  *** Contents of shared directory: ***
[2025-06-04 13:07:12] total 382424
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc 213509189 Jun  4 06:49 ATLAS.root_0
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:49 start_atlas.sh
[2025-06-04 13:07:12] -rw-r--r--. 2 boinc boinc    508878 Jun  4 06:49 input.tar.gz
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc 175971257 Jun  4 10:40 HITS.pool.root.1
[2025-06-04 13:07:12] -rw-------. 1 boinc boinc   1587200 Jun  4 10:43 result.tar.gz
13:07:14 (4869): run_atlas exited; CPU time 49301.993903
13:07:14 (4869): called boinc_finish(0)

</stderr_txt>
]]>

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