Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:58:40 (12476): wrapper (7.7.26015): starting
06:58:40 (12476): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:58:40] Arguments: --nthreads 8
[2025-06-04 06:58:40] Threads: 8
[2025-06-04 06:58:40] Checking for CVMFS
[2025-06-04 06:58:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:58:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:58:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:58:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:58:41] 2.11.2.0 1205 32746 91392 146768 1 114 19683847 25165825 2460 130560 0 16670908 99.794 18945638 2198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:58:41] CVMFS is ok
[2025-06-04 06:58:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:58:41] Checking for apptainer binary...
[2025-06-04 06:58:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:58:41] Running /usr/bin/apptainer --version
[2025-06-04 06:58:41] apptainer version 1.3.2-1.el7
[2025-06-04 06:58:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:58:43] cg-vwn325.simple-grid.lan
[2025-06-04 06:58:43] apptainer works
[2025-06-04 06:58:43] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:58:43] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:58:43] Starting ATLAS job with PandaID=6677786644
[2025-06-04 06:58:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:37:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:37:59] 2025-06-04 08:36:36,348 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:37:59] 2025-06-04 08:36:36,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:37:59] 2025-06-04 08:36:36,353 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:37:59] 2025-06-04 08:36:36,354 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,356 | INFO     | sum of deviations: 21361030233.499992
[2025-06-04 10:37:59] 2025-06-04 08:36:36,356 | INFO     | mean x: 1749019639.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,356 | INFO     | mean y: 2462119.0424528304
[2025-06-04 10:37:59] 2025-06-04 08:36:36,356 | INFO     | -- intersect: -12643169820.558264
[2025-06-04 10:37:59] 2025-06-04 08:36:36,356 | INFO     | intersect: -12643169820.558264
[2025-06-04 10:37:59] 2025-06-04 08:36:36,357 | INFO     | chi2: 2.5903002669551602
[2025-06-04 10:37:59] 2025-06-04 08:36:36,357 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,359 | INFO     | sum of deviations: 34525517734.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,359 | INFO     | mean x: 1749019487.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,359 | INFO     | mean y: 2471752.5990338163
[2025-06-04 10:37:59] 2025-06-04 08:36:36,359 | INFO     | -- intersect: -21953644588.436592
[2025-06-04 10:37:59] 2025-06-04 08:36:36,359 | INFO     | intersect: -21953644588.436592
[2025-06-04 10:37:59] 2025-06-04 08:36:36,360 | INFO     | chi2: 1.8235488344079083
[2025-06-04 10:37:59] 2025-06-04 08:36:36,360 | INFO     | current chi2=1.8235488344079083 (change=29.600870691665065 %)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,361 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,362 | INFO     | sum of deviations: 33444019606.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,362 | INFO     | mean x: 1749019334.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | mean y: 2470904.6881188117
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | -- intersect: -22884651431.776104
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | intersect: -22884651431.776104
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | chi2: 1.8249859524414809
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | current chi2=1.8249859524414809 (change=-0.07880885921211016 %)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,363 | INFO     | right removable region: 201
[2025-06-04 10:37:59] 2025-06-04 08:36:36,364 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,366 | INFO     | sum of deviations: -17181676935.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,366 | INFO     | mean x: 1749019792.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,366 | INFO     | mean y: 2490667.584541063
[2025-06-04 10:37:59] 2025-06-04 08:36:36,366 | INFO     | -- intersect: 10928987596.908043
[2025-06-04 10:37:59] 2025-06-04 08:36:36,366 | INFO     | intersect: 10928987596.908043
[2025-06-04 10:37:59] 2025-06-04 08:36:36,367 | INFO     | chi2: 0.8765881123996642
[2025-06-04 10:37:59] 2025-06-04 08:36:36,367 | INFO     | current chi2=0.8765881123996642 (change=66.15882245072407 %)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,367 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,369 | INFO     | sum of deviations: -13067738816.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,369 | INFO     | mean x: 1749019944.5
[2025-06-04 10:37:59] 2025-06-04 08:36:36,369 | INFO     | mean y: 2487406.3613861385
[2025-06-04 10:37:59] 2025-06-04 08:36:36,369 | INFO     | -- intersect: 8945283301.813185
[2025-06-04 10:37:59] 2025-06-04 08:36:36,370 | INFO     | intersect: 8945283301.813185
[2025-06-04 10:37:59] 2025-06-04 08:36:36,370 | INFO     | chi2: 0.8558514989585849
[2025-06-04 10:37:59] 2025-06-04 08:36:36,370 | INFO     | current chi2=0.8558514989585849 (change=2.3656051397175197 %)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,370 | INFO     | left removable region: 20
[2025-06-04 10:37:59] 2025-06-04 08:36:36,371 | INFO     | sum of square deviations: 1838657730.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,372 | INFO     | sum of deviations: 7437239742.999999
[2025-06-04 10:37:59] 2025-06-04 08:36:36,372 | INFO     | mean x: 1749019914.0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,372 | INFO     | mean y: 2491062.276243094
[2025-06-04 10:37:59] 2025-06-04 08:36:36,372 | INFO     | -- intersect: -7072170090.508968
[2025-06-04 10:37:59] 2025-06-04 08:36:36,372 | INFO     | intersect: -7072170090.508968
[2025-06-04 10:37:59] 2025-06-04 08:36:36,373 | INFO     | chi2: 0.0007513621887353351
[2025-06-04 10:37:59] 2025-06-04 08:36:36,373 | INFO     | -- intersect: -7072170090.508968
[2025-06-04 10:37:59] 2025-06-04 08:36:36,373 | INFO     | current memory leak: 4.04 B/s (using 181 data points, chi2=0.00)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | ..............................
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . Timing measurements:
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . get job = 0 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . initial setup = 3 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . payload setup = 14 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . stage-in = 0 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,374 | INFO     | . payload execution = 12931 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,375 | INFO     | . stage-out = 5 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,375 | INFO     | . log creation = 2 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,375 | INFO     | ..............................
[2025-06-04 10:37:59] 2025-06-04 08:36:36,514 | INFO     | 
[2025-06-04 10:37:59] 2025-06-04 08:36:36,514 | INFO     | job summary report
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | --------------------------------------------------
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | PanDA job id: 6677786644
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | task id: 45006595
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | errors: (none)
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | pilot state: finished 
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | transexitcode: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | exeerrorcode: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,515 | INFO     | exeerrordiag: 
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | exitcode: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | exitmsg: OK
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | cpuconsumptiontime: 49642 s
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | nevents: 400
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | neventsw: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | pid: 24761
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | pgrp: 24761
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | corecount: 8
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | event service: False
[2025-06-04 10:37:59] 2025-06-04 08:36:36,516 | INFO     | sizes: {0: 2405012, 1: 2405211, 2: 2405211, 11: 2405445, 12: 2405473, 12950: 2434952, 12955: 2443895, 12956: 2443951, 13031: 2444121}
[2025-06-04 10:37:59] 2025-06-04 08:36:36,517 | INFO     | --------------------------------------------------
[2025-06-04 10:37:59] 2025-06-04 08:36:36,517 | INFO     | 
[2025-06-04 10:37:59] 2025-06-04 08:36:36,517 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,010 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:37:59] 2025-06-04 08:36:37,011 | INFO     | job 6677786644 has completed (purged errors)
[2025-06-04 10:37:59] 2025-06-04 08:36:37,011 | INFO     | overall cleanup function is called
[2025-06-04 10:37:59] 2025-06-04 08:36:38,022 | INFO     | --- collectZombieJob: --- 10, [24761]
[2025-06-04 10:37:59] 2025-06-04 08:36:38,023 | INFO     | zombie collector waiting for pid 24761
[2025-06-04 10:37:59] 2025-06-04 08:36:38,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:37:59] 2025-06-04 08:36:38,023 | INFO     | collected zombie processes
[2025-06-04 10:37:59] 2025-06-04 08:36:38,023 | INFO     | will attempt to kill all subprocesses of pid=24761
[2025-06-04 10:37:59] 2025-06-04 08:36:38,172 | INFO     | process IDs to be killed: [24761] (in reverse order)
[2025-06-04 10:37:59] 2025-06-04 08:36:38,948 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:37:59] 2025-06-04 08:36:38,949 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:37:59] 2025-06-04 08:36:38,952 | INFO     | did not find any defunct processes belonging to 24761
[2025-06-04 10:37:59] 2025-06-04 08:36:38,955 | INFO     | did not find any defunct processes belonging to 24761
[2025-06-04 10:37:59] 2025-06-04 08:36:38,956 | INFO     | ready for new job
[2025-06-04 10:37:59] 2025-06-04 08:36:38,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:37:59] 2025-06-04 08:36:38,958 | INFO     | **************************************
[2025-06-04 10:37:59] 2025-06-04 08:36:38,958 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:37:59] 2025-06-04 08:36:38,958 | INFO     | **************************************
[2025-06-04 10:37:59] 2025-06-04 08:36:38,958 | INFO     | 
[2025-06-04 10:37:59] 2025-06-04 08:36:38,959 | INFO     | pilot is running in a VM
[2025-06-04 10:37:59] 2025-06-04 08:36:38,959 | INFO     | architecture information:
[2025-06-04 10:37:59] 2025-06-04 08:36:38,959 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:37:59] 2025-06-04 08:36:38,992 | INFO     | cat /etc/os-release:
[2025-06-04 10:37:59] NAME="CentOS Linux"
[2025-06-04 10:37:59] VERSION="7 (Core)"
[2025-06-04 10:37:59] ID="centos"
[2025-06-04 10:37:59] ID_LIKE="rhel fedora"
[2025-06-04 10:37:59] VERSION_ID="7"
[2025-06-04 10:37:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:37:59] ANSI_COLOR="0;31"
[2025-06-04 10:37:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:37:59] HOME_URL="https://www.centos.org/"
[2025-06-04 10:37:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:37:59] 
[2025-06-04 10:37:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:37:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:37:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:37:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:37:59] 
[2025-06-04 10:37:59] 2025-06-04 08:36:38,993 | INFO     | **************************************
[2025-06-04 10:37:59] 2025-06-04 08:36:39,496 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-04 10:37:59] 2025-06-04 08:36:39,615 | INFO     | sufficient remaining disk space (497399365632 B)
[2025-06-04 10:37:59] 2025-06-04 08:36:39,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:37:59] 2025-06-04 08:36:39,615 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:37:59] 2025-06-04 08:36:39,615 | INFO     | update_server=False
[2025-06-04 10:37:59] 2025-06-04 08:36:39,616 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:37:59] 2025-06-04 08:36:39,616 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:37:59] 2025-06-04 08:36:39,617 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:37:59] 2025-06-04 08:36:39,617 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:37:59] 2025-06-04 08:36:39,617 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:37:59] 2025-06-04 08:36:39,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:37:59] 2025-06-04 08:36:39,876 | INFO     | all payload control threads have been joined
[2025-06-04 10:37:59] 2025-06-04 08:36:40,040 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 10:37:59] 2025-06-04 08:36:40,041 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 10:37:59] 2025-06-04 08:36:40,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:37:59] 2025-06-04 08:36:40,041 | INFO     | will abort loop
[2025-06-04 10:37:59] 2025-06-04 08:36:40,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:37:59] 2025-06-04 08:36:40,548 | INFO     | all data control threads have been joined
[2025-06-04 10:37:59] 2025-06-04 08:36:40,621 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:40,679 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:40,882 | INFO     | [payload] control thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:40,919 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:40,975 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,046 | INFO     | all job control threads have been joined
[2025-06-04 10:37:59] 2025-06-04 08:36:41,047 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,116 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,202 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:37:59] 2025-06-04 08:36:41,554 | INFO     | [data] control thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,629 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:41,899 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:42,052 | INFO     | [job] control thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:42,077 | INFO     | [job] validate thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:42,545 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:44,065 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:50,501 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:37:59] 2025-06-04 08:36:51,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:37:59] 2025-06-04 08:36:53,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859170572096)>', '<ExcThread(monitor, started 139858722924288)>']
[2025-06-04 10:37:59] 2025-06-04 08:36:53,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:37:59] 2025-06-04 08:36:53,703 | INFO     | [monitor] control thread has ended
[2025-06-04 10:37:59] 2025-06-04 08:36:58,400 | INFO     | all workflow threads have been joined
[2025-06-04 10:37:59] 2025-06-04 08:36:58,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:37:59] 2025-06-04 08:36:58,401 | INFO     | traces error code: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:58,401 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:37:59] 2025-06-04 08:36:58,830 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:37:59] 2025-06-04 08:36:58,874 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:37:59] 2025-06-04 08:36:58,897 [wrapper] pilotpid: 16199
[2025-06-04 10:37:59] 2025-06-04 08:36:58,937 [wrapper] Pilot exit status: 0
[2025-06-04 10:37:59] 2025-06-04 08:36:59,324 [wrapper] pandaids: 6677786644
[2025-06-04 10:37:59] 2025-06-04 08:37:00,052 [wrapper] cleanup supervisor_pilot 10982 16200
[2025-06-04 10:37:59] 2025-06-04 08:37:00,096 [wrapper] Test setup, not cleaning
[2025-06-04 10:37:59] 2025-06-04 08:37:00,160 [wrapper] apfmon messages muted
[2025-06-04 10:37:59] 2025-06-04 08:37:00,206 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:37:59] 2025-06-04 08:37:00,267 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:37:59]  *** Error codes and diagnostics ***
[2025-06-04 10:37:59]     "exeErrorCode": 0,
[2025-06-04 10:37:59]     "exeErrorDiag": "",
[2025-06-04 10:37:59]     "pilotErrorCode": 0,
[2025-06-04 10:37:59]     "pilotErrorDiag": "",
[2025-06-04 10:37:59]  *** Listing of results directory ***
[2025-06-04 10:37:59] total 394752
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-04 10:37:59] -rwx------. 1 boinc boinc     37140 Jun  3 19:15 runpilot2-wrapper.sh
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:15 queuedata.json
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:37:59] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:58 run_atlas
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:58 job.xml
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:58 init_data.xml
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc 218175080 Jun  4 06:58 EVNT.45006593._001603.pool.root.1
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:58 start_atlas.sh
[2025-06-04 10:37:59] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:58 shared
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc    508872 Jun  4 06:58 input.tar.gz
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:58 boinc_lockfile
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc      2524 Jun  4 06:58 pandaJob.out
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc    986745 Jun  4 06:59 agis_schedconf.cvmfs.json
[2025-06-04 10:37:59] drwx------. 4 boinc boinc      4096 Jun  4 06:59 pilot3
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc 179238703 Jun  4 10:34 HITS.45006595._039961.pool.root.1
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:34 boinc_task_state.xml
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc      1018 Jun  4 10:35 memory_monitor_summary.json
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc   1603667 Jun  4 10:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc    363388 Jun  4 10:35 log.45006595._039961.job.log.tgz.1
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc        95 Jun  4 10:36 pilot_heartbeat.json
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc      7686 Jun  4 10:36 heartbeat.json
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc      4798 Jun  4 10:36 pilotlog.txt
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc   1132766 Jun  4 10:37 log.45006595._039961.job.log.1
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc       357 Jun  4 10:37 output.list
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:37 runtime_log
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc   1515520 Jun  4 10:37 result.tar.gz
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc      8673 Jun  4 10:37 runtime_log.err
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc       657 Jun  4 10:37 6WrLDmOPkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcGlKDm7Zbvbm.diag
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:37 boinc_mmap_file
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:37 wrapper_checkpoint.txt
[2025-06-04 10:37:59] -rw-r--r--. 1 boinc boinc     20508 Jun  4 10:37 stderr.txt
[2025-06-04 10:37:59] HITS file was successfully produced:
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc 179238703 Jun  4 10:34 shared/HITS.pool.root.1
[2025-06-04 10:37:59]  *** Contents of shared directory: ***
[2025-06-04 10:37:59] total 390100
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc 218175080 Jun  4 06:58 ATLAS.root_0
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:58 start_atlas.sh
[2025-06-04 10:37:59] -rw-r--r--. 2 boinc boinc    508872 Jun  4 06:58 input.tar.gz
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc 179238703 Jun  4 10:34 HITS.pool.root.1
[2025-06-04 10:37:59] -rw-------. 1 boinc boinc   1515520 Jun  4 10:37 result.tar.gz
10:38:01 (12476): run_atlas exited; CPU time 49808.154514
10:38:01 (12476): called boinc_finish(0)

</stderr_txt>
]]>

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