Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:26:12 (7637): wrapper (7.7.26015): starting
05:26:12 (7637): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:26:12] Arguments: --nthreads 8
[2025-06-04 05:26:12] Threads: 8
[2025-06-04 05:26:12] Checking for CVMFS
[2025-06-04 05:26:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:26:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:26:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:42:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:42:21] 2.11.2.0 25755 32847 100200 146766 2 16 19080498 25165824 3532 130560 0 18429894 99.795 18432059 2372 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 05:42:21] CVMFS is ok
[2025-06-04 05:42:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:42:21] Checking for apptainer binary...
[2025-06-04 05:42:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:42:21] Running /usr/bin/apptainer --version
[2025-06-04 05:42:21] apptainer version 1.3.2-1.el7
[2025-06-04 05:42:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:42:43] cg-vwn458.simple-grid.lan
[2025-06-04 05:42:43] apptainer works
[2025-06-04 05:42:43] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:42:43] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:42:43] Starting ATLAS job with PandaID=6667032582
[2025-06-04 05:42:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:49:28]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:49:28] 2025-06-04 08:48:17,176 | INFO     | extracted standard info from prmon json
[2025-06-04 10:49:28] 2025-06-04 08:48:17,176 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:49:28] 2025-06-04 08:48:17,176 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:49:28] 2025-06-04 08:48:17,177 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:49:28] 2025-06-04 08:48:17,177 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:49:28] 2025-06-04 08:48:17,183 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:49:28] 2025-06-04 08:48:17,184 | INFO     | sum of square deviations: 7407141672.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,187 | INFO     | sum of deviations: 26112139460.000004
[2025-06-04 10:49:28] 2025-06-04 08:48:17,187 | INFO     | mean x: 1749018032.5
[2025-06-04 10:49:28] 2025-06-04 08:48:17,187 | INFO     | mean y: 2481957.1180555555
[2025-06-04 10:49:28] 2025-06-04 08:48:17,187 | INFO     | -- intersect: -6163270610.479766
[2025-06-04 10:49:28] 2025-06-04 08:48:17,187 | INFO     | intersect: -6163270610.479766
[2025-06-04 10:49:28] 2025-06-04 08:48:17,188 | INFO     | chi2: 7.384665092871041
[2025-06-04 10:49:28] 2025-06-04 08:48:17,188 | INFO     | sum of square deviations: 7028008982.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | sum of deviations: 64881203629.00001
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | mean x: 1749017880.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | mean y: 2497386.3533568904
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | -- intersect: -16144093421.040392
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | intersect: -16144093421.040392
[2025-06-04 10:49:28] 2025-06-04 08:48:17,191 | INFO     | chi2: 5.8394731771633595
[2025-06-04 10:49:28] 2025-06-04 08:48:17,192 | INFO     | current chi2=5.8394731771633595 (change=20.924333010028693 %)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,192 | INFO     | right removable region: 282
[2025-06-04 10:49:28] 2025-06-04 08:48:17,192 | INFO     | sum of square deviations: 7028008982.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,194 | INFO     | sum of deviations: -73821408890.99998
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | mean x: 1749018185.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | mean y: 2522120.4558303887
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | -- intersect: 18374010677.651253
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | intersect: 18374010677.651253
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | chi2: 2.816128122295642
[2025-06-04 10:49:28] 2025-06-04 08:48:17,195 | INFO     | current chi2=2.816128122295642 (change=61.86518837510645 %)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,196 | INFO     | sum of square deviations: 6662039329.5
[2025-06-04 10:49:28] 2025-06-04 08:48:17,198 | INFO     | sum of deviations: -110183654681.00005
[2025-06-04 10:49:28] 2025-06-04 08:48:17,198 | INFO     | mean x: 1749018337.5
[2025-06-04 10:49:28] 2025-06-04 08:48:17,198 | INFO     | mean y: 2537175.7769784173
[2025-06-04 10:49:28] 2025-06-04 08:48:17,199 | INFO     | -- intersect: 28929600346.43231
[2025-06-04 10:49:28] 2025-06-04 08:48:17,199 | INFO     | intersect: 28929600346.43231
[2025-06-04 10:49:28] 2025-06-04 08:48:17,199 | INFO     | chi2: 1.9366497031998786
[2025-06-04 10:49:28] 2025-06-04 08:48:17,199 | INFO     | current chi2=1.9366497031998786 (change=31.230057046510833 %)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,200 | INFO     | sum of square deviations: 6309000152.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,202 | INFO     | sum of deviations: -110290112491.00002
[2025-06-04 10:49:28] 2025-06-04 08:48:17,202 | INFO     | mean x: 1749018490.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,202 | INFO     | mean y: 2537198.772893773
[2025-06-04 10:49:28] 2025-06-04 08:48:17,202 | INFO     | -- intersect: 30577817173.966496
[2025-06-04 10:49:28] 2025-06-04 08:48:17,202 | INFO     | intersect: 30577817173.966496
[2025-06-04 10:49:28] 2025-06-04 08:48:17,203 | INFO     | chi2: 1.9146141005561053
[2025-06-04 10:49:28] 2025-06-04 08:48:17,203 | INFO     | current chi2=1.9146141005561053 (change=1.13782077405968 %)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,203 | INFO     | left removable region: 30
[2025-06-04 10:49:28] 2025-06-04 08:48:17,204 | INFO     | sum of square deviations: 4962187923.0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,205 | INFO     | sum of deviations: -45955829707.5
[2025-06-04 10:49:28] 2025-06-04 08:48:17,206 | INFO     | mean x: 1749018764.5
[2025-06-04 10:49:28] 2025-06-04 08:48:17,206 | INFO     | mean y: 2542442.2976190476
[2025-06-04 10:49:28] 2025-06-04 08:48:17,206 | INFO     | -- intersect: 16200560281.16858
[2025-06-04 10:49:28] 2025-06-04 08:48:17,206 | INFO     | intersect: 16200560281.16858
[2025-06-04 10:49:28] 2025-06-04 08:48:17,207 | INFO     | chi2: 0.20702672240215364
[2025-06-04 10:49:28] 2025-06-04 08:48:17,207 | INFO     | -- intersect: 16200560281.16858
[2025-06-04 10:49:28] 2025-06-04 08:48:17,207 | INFO     | current memory leak: -9.26 B/s (using 252 data points, chi2=0.21)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | ..............................
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . Timing measurements:
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . get job = 0 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . initial setup = 5 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . payload setup = 157 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . stage-in = 0 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,208 | INFO     | . payload execution = 17664 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,209 | INFO     | . stage-out = 3 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,209 | INFO     | . log creation = 1 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,209 | INFO     | ..............................
[2025-06-04 10:49:28] 2025-06-04 08:48:17,331 | INFO     | 
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | job summary report
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | --------------------------------------------------
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | PanDA job id: 6667032582
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | task id: 44871837
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | errors: (none)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | pilot state: finished 
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | transexitcode: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,332 | INFO     | exeerrorcode: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | exeerrordiag: 
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | exitcode: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | exitmsg: OK
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | cpuconsumptiontime: 65518 s
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | nevents: 400
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | neventsw: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | pid: 28513
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | pgrp: 28513
[2025-06-04 10:49:28] 2025-06-04 08:48:17,333 | INFO     | corecount: 8
[2025-06-04 10:49:28] 2025-06-04 08:48:17,334 | INFO     | event service: False
[2025-06-04 10:49:28] 2025-06-04 08:48:17,334 | INFO     | sizes: {0: 2405235, 1: 2405235, 12: 2405263, 22: 2405291, 33: 2405319, 44: 2405375, 54: 2405531, 65: 2405559, 76: 2405587, 87: 2405643, 92: 2405877, 97: 2406185, 1
[2025-06-04 10:49:28] 2025-06-04 08:48:17,334 | INFO     | --------------------------------------------------
[2025-06-04 10:49:28] 2025-06-04 08:48:17,334 | INFO     | 
[2025-06-04 10:49:28] 2025-06-04 08:48:17,334 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 10:49:28] 2025-06-04 08:48:17,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:49:28] 2025-06-04 08:48:17,792 | INFO     | job 6667032582 has completed (purged errors)
[2025-06-04 10:49:28] 2025-06-04 08:48:17,793 | INFO     | overall cleanup function is called
[2025-06-04 10:49:28] 2025-06-04 08:48:18,801 | INFO     | --- collectZombieJob: --- 10, [28513]
[2025-06-04 10:49:28] 2025-06-04 08:48:18,801 | INFO     | zombie collector waiting for pid 28513
[2025-06-04 10:49:28] 2025-06-04 08:48:18,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:49:28] 2025-06-04 08:48:18,802 | INFO     | collected zombie processes
[2025-06-04 10:49:28] 2025-06-04 08:48:18,802 | INFO     | will attempt to kill all subprocesses of pid=28513
[2025-06-04 10:49:28] 2025-06-04 08:48:18,909 | INFO     | process IDs to be killed: [28513] (in reverse order)
[2025-06-04 10:49:28] 2025-06-04 08:48:19,821 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:49:28] 2025-06-04 08:48:19,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:49:28] 2025-06-04 08:48:19,824 | INFO     | did not find any defunct processes belonging to 28513
[2025-06-04 10:49:28] 2025-06-04 08:48:19,827 | INFO     | did not find any defunct processes belonging to 28513
[2025-06-04 10:49:28] 2025-06-04 08:48:19,827 | INFO     | ready for new job
[2025-06-04 10:49:28] 2025-06-04 08:48:19,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:49:28] 2025-06-04 08:48:19,829 | INFO     | **************************************
[2025-06-04 10:49:28] 2025-06-04 08:48:19,829 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:49:28] 2025-06-04 08:48:19,829 | INFO     | **************************************
[2025-06-04 10:49:28] 2025-06-04 08:48:19,829 | INFO     | 
[2025-06-04 10:49:28] 2025-06-04 08:48:19,830 | INFO     | pilot is running in a VM
[2025-06-04 10:49:28] 2025-06-04 08:48:19,830 | INFO     | architecture information:
[2025-06-04 10:49:28] 2025-06-04 08:48:19,839 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:49:28] 2025-06-04 08:48:19,973 | INFO     | cat /etc/os-release:
[2025-06-04 10:49:28] NAME="CentOS Linux"
[2025-06-04 10:49:28] VERSION="7 (Core)"
[2025-06-04 10:49:28] ID="centos"
[2025-06-04 10:49:28] ID_LIKE="rhel fedora"
[2025-06-04 10:49:28] VERSION_ID="7"
[2025-06-04 10:49:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:49:28] ANSI_COLOR="0;31"
[2025-06-04 10:49:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:49:28] HOME_URL="https://www.centos.org/"
[2025-06-04 10:49:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:49:28] 
[2025-06-04 10:49:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:49:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:49:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:49:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:49:28] 
[2025-06-04 10:49:28] 2025-06-04 08:48:19,973 | INFO     | **************************************
[2025-06-04 10:49:28] 2025-06-04 08:48:20,476 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 10:49:28] 2025-06-04 08:48:20,617 | INFO     | sufficient remaining disk space (496952672256 B)
[2025-06-04 10:49:28] 2025-06-04 08:48:20,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:49:28] 2025-06-04 08:48:20,617 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:49:28] 2025-06-04 08:48:20,617 | INFO     | update_server=False
[2025-06-04 10:49:28] 2025-06-04 08:48:20,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:49:28] 2025-06-04 08:48:20,619 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:49:28] 2025-06-04 08:48:20,620 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:49:28] 2025-06-04 08:48:20,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:49:28] 2025-06-04 08:48:20,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:49:28] 2025-06-04 08:48:20,763 | INFO     | all data control threads have been joined
[2025-06-04 10:49:28] 2025-06-04 08:48:21,103 | INFO     | all job control threads have been joined
[2025-06-04 10:49:28] 2025-06-04 08:48:21,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:49:28] 2025-06-04 08:48:21,359 | INFO     | aborting loop
[2025-06-04 10:49:28] 2025-06-04 08:48:21,623 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:21,630 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:21,720 | INFO     | all payload control threads have been joined
[2025-06-04 10:49:28] 2025-06-04 08:48:21,769 | INFO     | [data] control thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:21,784 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:49:28] 2025-06-04 08:48:21,961 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,108 | INFO     | [job] control thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,111 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:49:28] 2025-06-04 08:48:22,360 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,364 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,469 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,603 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,726 | INFO     | [payload] control thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:22,931 | INFO     | [job] validate thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:23,116 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:23,350 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:23,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:49:28] 2025-06-04 08:48:23,793 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:27,453 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:49:28] 2025-06-04 08:48:28,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140580044080960)>', '<ExcThread(monitor, started 140579740559104)>']
[2025-06-04 10:49:28] 2025-06-04 08:48:29,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:49:28] 2025-06-04 08:48:29,675 | INFO     | [monitor] control thread has ended
[2025-06-04 10:49:28] 2025-06-04 08:48:33,703 | INFO     | all workflow threads have been joined
[2025-06-04 10:49:28] 2025-06-04 08:48:33,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:49:28] 2025-06-04 08:48:33,704 | INFO     | traces error code: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:33,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:49:28] 2025-06-04 08:48:34,054 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:49:28] 2025-06-04 08:48:34,149 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:49:28] 2025-06-04 08:48:34,232 [wrapper] pilotpid: 21835
[2025-06-04 10:49:28] 2025-06-04 08:48:34,312 [wrapper] Pilot exit status: 0
[2025-06-04 10:49:28] 2025-06-04 08:48:34,586 [wrapper] pandaids: 6667032582
[2025-06-04 10:49:28] 2025-06-04 08:48:35,131 [wrapper] cleanup supervisor_pilot  5417 21836
[2025-06-04 10:49:28] 2025-06-04 08:48:35,231 [wrapper] Test setup, not cleaning
[2025-06-04 10:49:28] 2025-06-04 08:48:35,283 [wrapper] apfmon messages muted
[2025-06-04 10:49:28] 2025-06-04 08:48:35,331 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:49:28] 2025-06-04 08:48:35,387 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:49:28]  *** Error codes and diagnostics ***
[2025-06-04 10:49:28]     "exeErrorCode": 0,
[2025-06-04 10:49:28]     "exeErrorDiag": "",
[2025-06-04 10:49:28]     "pilotErrorCode": 0,
[2025-06-04 10:49:28]     "pilotErrorDiag": "",
[2025-06-04 10:49:28]  *** Listing of results directory ***
[2025-06-04 10:49:28] total 422724
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc    495897 May 27 14:18 pilot3.tar.gz
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc      5111 May 27 14:56 queuedata.json
[2025-06-04 10:49:28] -rwx------. 1 boinc boinc     37140 May 27 14:57 runpilot2-wrapper.sh
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc       100 Jun  4 05:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:49:28] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 05:26 run_atlas
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc       105 Jun  4 05:26 job.xml
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc 228001121 Jun  4 05:26 EVNT.44871834._002659.pool.root.1
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:26 start_atlas.sh
[2025-06-04 10:49:28] drwxrwx--x. 2 boinc boinc        68 Jun  4 05:26 shared
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc    508879 Jun  4 05:26 input.tar.gz
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc      6392 Jun  4 05:26 init_data.xml
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc         0 Jun  4 05:26 boinc_lockfile
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc      2559 Jun  4 05:42 pandaJob.out
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc    986077 Jun  4 05:46 agis_schedconf.cvmfs.json
[2025-06-04 10:49:28] drwx------. 4 boinc boinc      4096 Jun  4 05:46 pilot3
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc 197144830 Jun  4 10:45 HITS.44871837._067578.pool.root.1
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:45 boinc_task_state.xml
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc      1029 Jun  4 10:46 memory_monitor_summary.json
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc   1603667 Jun  4 10:46 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc    405540 Jun  4 10:46 log.44871837._067578.job.log.tgz.1
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc      7690 Jun  4 10:48 heartbeat.json
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc        95 Jun  4 10:48 pilot_heartbeat.json
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc      4540 Jun  4 10:48 pilotlog.txt
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc   1541420 Jun  4 10:48 log.44871837._067578.job.log.1
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc       357 Jun  4 10:48 output.list
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:48 runtime_log
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc   1966080 Jun  4 10:48 result.tar.gz
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc       657 Jun  4 10:48 yWZKDm428d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmISZKDm7kW7So.diag
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc      8673 Jun  4 10:48 runtime_log.err
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:49 boinc_mmap_file
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:49 wrapper_checkpoint.txt
[2025-06-04 10:49:28] -rw-r--r--. 1 boinc boinc     20522 Jun  4 10:49 stderr.txt
[2025-06-04 10:49:28] HITS file was successfully produced:
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc 197144830 Jun  4 10:45 shared/HITS.pool.root.1
[2025-06-04 10:49:28]  *** Contents of shared directory: ***
[2025-06-04 10:49:28] total 417624
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc 228001121 Jun  4 05:26 ATLAS.root_0
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:26 start_atlas.sh
[2025-06-04 10:49:28] -rw-r--r--. 2 boinc boinc    508879 Jun  4 05:26 input.tar.gz
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc 197144830 Jun  4 10:45 HITS.pool.root.1
[2025-06-04 10:49:28] -rw-------. 1 boinc boinc   1966080 Jun  4 10:48 result.tar.gz
10:49:30 (7637): run_atlas exited; CPU time 65758.164707
10:49:30 (7637): called boinc_finish(0)

</stderr_txt>
]]>

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