Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:21 (4857): wrapper (7.7.26015): starting
07:22:21 (4857): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:22:21] Arguments: --nthreads 8
[2025-06-04 07:22:21] Threads: 8
[2025-06-04 07:22:21] Checking for CVMFS
[2025-06-04 07:22:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:22:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:22:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:22:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:22:24] 2.11.2.0 13438 32776 87344 146769 3 69 19082441 25165824 3906 130560 0 18012716 99.821 19382807 2189 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 07:22:24] CVMFS is ok
[2025-06-04 07:22:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:22:24] Checking for apptainer binary...
[2025-06-04 07:22:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:22:24] Running /usr/bin/apptainer --version
[2025-06-04 07:22:24] apptainer version 1.3.2-1.el7
[2025-06-04 07:22:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:33:51] cg-vwn257.simple-grid.lan
[2025-06-04 07:33:51] apptainer works
[2025-06-04 07:33:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:33:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:33:51] Starting ATLAS job with PandaID=6677862520
[2025-06-04 07:33:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:18:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:18:03] 2025-06-04 09:28:48,674 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:18:03] 2025-06-04 09:28:48,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:18:03] 2025-06-04 09:28:48,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:18:03] 2025-06-04 09:28:48,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:18:03] 2025-06-04 09:28:48,679 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:18:03] 2025-06-04 09:28:48,680 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,682 | INFO     | sum of deviations: 62782050278.99999
[2025-06-04 14:18:03] 2025-06-04 09:28:48,682 | INFO     | mean x: 1749022564.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,682 | INFO     | mean y: 2438067.365296804
[2025-06-04 14:18:03] 2025-06-04 09:28:48,683 | INFO     | -- intersect: -33713030011.97995
[2025-06-04 14:18:03] 2025-06-04 09:28:48,683 | INFO     | intersect: -33713030011.97995
[2025-06-04 14:18:03] 2025-06-04 09:28:48,683 | INFO     | chi2: 5.433343893690002
[2025-06-04 14:18:03] 2025-06-04 09:28:48,685 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,686 | INFO     | sum of deviations: 75654234807.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | mean x: 1749022411.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | mean y: 2446883.88317757
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | -- intersect: -43540554048.01931
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | intersect: -43540554048.01931
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | chi2: 4.706841652149715
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | current chi2=4.706841652149715 (change=13.371180910967325 %)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,687 | INFO     | right removable region: 213
[2025-06-04 14:18:03] 2025-06-04 09:28:48,688 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,689 | INFO     | sum of deviations: -7521691101.500002
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | mean x: 1749022716.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | mean y: 2487154.285046729
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | -- intersect: 4331617712.394509
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | intersect: 4331617712.394509
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | chi2: 1.3232032226560415
[2025-06-04 14:18:03] 2025-06-04 09:28:48,690 | INFO     | current chi2=1.3232032226560415 (change=75.64661378800743 %)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,694 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,696 | INFO     | sum of deviations: -25028012202.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,696 | INFO     | mean x: 1749022869.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,696 | INFO     | mean y: 2499854.5406698566
[2025-06-04 14:18:03] 2025-06-04 09:28:48,696 | INFO     | -- intersect: 15466238688.200628
[2025-06-04 14:18:03] 2025-06-04 09:28:48,696 | INFO     | intersect: 15466238688.200628
[2025-06-04 14:18:03] 2025-06-04 09:28:48,697 | INFO     | chi2: 0.8957458764504449
[2025-06-04 14:18:03] 2025-06-04 09:28:48,697 | INFO     | current chi2=0.8957458764504449 (change=32.304738900769095 %)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,697 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,702 | INFO     | sum of deviations: -20267881106.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | mean x: 1749023021.5
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | mean y: 2496164.1764705884
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | -- intersect: 13468706186.352598
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | intersect: 13468706186.352598
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | chi2: 0.8751119473816451
[2025-06-04 14:18:03] 2025-06-04 09:28:48,703 | INFO     | current chi2=0.8751119473816451 (change=2.303547201418942 %)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,704 | INFO     | left removable region: 30
[2025-06-04 14:18:03] 2025-06-04 09:28:48,704 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,705 | INFO     | sum of deviations: 5251664460.000001
[2025-06-04 14:18:03] 2025-06-04 09:28:48,705 | INFO     | mean x: 1749023296.0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,705 | INFO     | mean y: 2496939.8032786883
[2025-06-04 14:18:03] 2025-06-04 09:28:48,706 | INFO     | -- intersect: -4831137916.022259
[2025-06-04 14:18:03] 2025-06-04 09:28:48,706 | INFO     | intersect: -4831137916.022259
[2025-06-04 14:18:03] 2025-06-04 09:28:48,706 | INFO     | chi2: 0.0005650985635125244
[2025-06-04 14:18:03] 2025-06-04 09:28:48,706 | INFO     | -- intersect: -4831137916.022259
[2025-06-04 14:18:03] 2025-06-04 09:28:48,706 | INFO     | current memory leak: 2.76 B/s (using 183 data points, chi2=0.00)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,707 | INFO     | ..............................
[2025-06-04 14:18:03] 2025-06-04 09:28:48,707 | INFO     | . Timing measurements:
[2025-06-04 14:18:03] 2025-06-04 09:28:48,707 | INFO     | . get job = 0 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,707 | INFO     | . initial setup = 7 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | . payload setup = 143 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | . stage-in = 0 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | . payload execution = 13468 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | . stage-out = 2 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | . log creation = 0 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,708 | INFO     | ..............................
[2025-06-04 14:18:03] 2025-06-04 09:28:48,862 | INFO     | 
[2025-06-04 14:18:03] 2025-06-04 09:28:48,862 | INFO     | job summary report
[2025-06-04 14:18:03] 2025-06-04 09:28:48,862 | INFO     | --------------------------------------------------
[2025-06-04 14:18:03] 2025-06-04 09:28:48,862 | INFO     | PanDA job id: 6677862520
[2025-06-04 14:18:03] 2025-06-04 09:28:48,862 | INFO     | task id: 45006595
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | errors: (none)
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | pilot state: finished 
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | transexitcode: 0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | exeerrorcode: 0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | exeerrordiag: 
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | exitcode: 0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | exitmsg: OK
[2025-06-04 14:18:03] 2025-06-04 09:28:48,863 | INFO     | cpuconsumptiontime: 48702 s
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | nevents: 400
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | neventsw: 0
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | pid: 25636
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | pgrp: 25636
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | corecount: 8
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | event service: False
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | sizes: {0: 2405184, 1: 2405184, 11: 2405212, 22: 2405240, 33: 2405268, 44: 2405324, 54: 2405480, 65: 2405508, 76: 2405536, 87: 2405592, 90: 2405826, 97: 2406134, 1
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | --------------------------------------------------
[2025-06-04 14:18:03] 2025-06-04 09:28:48,864 | INFO     | 
[2025-06-04 14:18:03] 2025-06-04 09:28:48,865 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 14:18:03] 2025-06-04 09:28:49,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:18:03] 2025-06-04 09:28:49,023 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,023 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:18:03] 2025-06-04 09:28:49,023 | INFO     | job 6677862520 has completed (purged errors)
[2025-06-04 14:18:03] 2025-06-04 09:28:49,023 | INFO     | overall cleanup function is called
[2025-06-04 14:18:03] 2025-06-04 09:28:50,032 | INFO     | --- collectZombieJob: --- 10, [25636]
[2025-06-04 14:18:03] 2025-06-04 09:28:50,032 | INFO     | zombie collector waiting for pid 25636
[2025-06-04 14:18:03] 2025-06-04 09:28:50,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:18:03] 2025-06-04 09:28:50,032 | INFO     | collected zombie processes
[2025-06-04 14:18:03] 2025-06-04 09:28:50,032 | INFO     | will attempt to kill all subprocesses of pid=25636
[2025-06-04 14:18:03] 2025-06-04 09:28:50,172 | INFO     | process IDs to be killed: [25636] (in reverse order)
[2025-06-04 14:18:03] 2025-06-04 09:28:51,041 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:18:03] 2025-06-04 09:28:51,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:18:03] 2025-06-04 09:28:51,045 | INFO     | did not find any defunct processes belonging to 25636
[2025-06-04 14:18:03] 2025-06-04 09:28:51,049 | INFO     | did not find any defunct processes belonging to 25636
[2025-06-04 14:18:03] 2025-06-04 09:28:51,049 | INFO     | ready for new job
[2025-06-04 14:18:03] 2025-06-04 09:28:51,050 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:18:03] 2025-06-04 09:28:51,051 | INFO     | **************************************
[2025-06-04 14:18:03] 2025-06-04 09:28:51,052 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:18:03] 2025-06-04 09:28:51,052 | INFO     | **************************************
[2025-06-04 14:18:03] 2025-06-04 09:28:51,052 | INFO     | 
[2025-06-04 14:18:03] 2025-06-04 09:28:51,052 | INFO     | pilot is running in a VM
[2025-06-04 14:18:03] 2025-06-04 09:28:51,053 | INFO     | architecture information:
[2025-06-04 14:18:03] 2025-06-04 09:28:51,065 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:18:03] 2025-06-04 09:28:51,282 | INFO     | cat /etc/os-release:
[2025-06-04 14:18:03] NAME="CentOS Linux"
[2025-06-04 14:18:03] VERSION="7 (Core)"
[2025-06-04 14:18:03] ID="centos"
[2025-06-04 14:18:03] ID_LIKE="rhel fedora"
[2025-06-04 14:18:03] VERSION_ID="7"
[2025-06-04 14:18:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:18:03] ANSI_COLOR="0;31"
[2025-06-04 14:18:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:18:03] HOME_URL="https://www.centos.org/"
[2025-06-04 14:18:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:18:03] 
[2025-06-04 14:18:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:18:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:18:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:18:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:18:03] 
[2025-06-04 14:18:03] 2025-06-04 09:28:51,283 | INFO     | **************************************
[2025-06-04 14:18:03] 2025-06-04 09:28:51,786 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 14:18:03] 2025-06-04 09:28:52,014 | INFO     | sufficient remaining disk space (496824745984 B)
[2025-06-04 14:18:03] 2025-06-04 09:28:52,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:18:03] 2025-06-04 09:28:52,015 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:18:03] 2025-06-04 09:28:52,015 | INFO     | update_server=False
[2025-06-04 14:18:03] 2025-06-04 09:28:52,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:18:03] 2025-06-04 09:28:52,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:18:03] 2025-06-04 09:28:52,387 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:18:03] 2025-06-04 09:28:52,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:18:03] 2025-06-04 09:28:52,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:18:03] 2025-06-04 09:28:52,415 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 14:18:03] 2025-06-04 09:28:52,415 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 14:18:03] 2025-06-04 09:28:52,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:18:03] 2025-06-04 09:28:52,415 | INFO     | will abort loop
[2025-06-04 14:18:03] 2025-06-04 09:28:52,482 | INFO     | all payload control threads have been joined
[2025-06-04 14:18:03] 2025-06-04 09:28:53,012 | INFO     | all data control threads have been joined
[2025-06-04 14:18:03] 2025-06-04 09:28:53,021 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,084 | INFO     | all job control threads have been joined
[2025-06-04 14:18:03] 2025-06-04 09:28:53,088 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,187 | INFO     | [job] validate thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,187 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,228 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:18:03] 2025-06-04 09:28:53,421 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,488 | INFO     | [payload] control thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,642 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:53,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:18:03] 2025-06-04 09:28:54,018 | INFO     | [data] control thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,090 | INFO     | [job] control thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,102 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,218 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,456 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,597 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:54,889 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:57,394 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:18:03] 2025-06-04 09:28:59,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483765925696)>', '<ExcThread(monitor, started 140483321906944)>']
[2025-06-04 14:18:03] 2025-06-04 09:28:59,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:18:03] 2025-06-04 09:28:59,427 | INFO     | [monitor] control thread has ended
[2025-06-04 14:18:03] 2025-06-04 09:29:04,303 | INFO     | all workflow threads have been joined
[2025-06-04 14:18:03] 2025-06-04 09:29:04,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:18:03] 2025-06-04 09:29:04,303 | INFO     | traces error code: 0
[2025-06-04 14:18:03] 2025-06-04 09:29:04,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:18:03] 2025-06-04 09:29:04,598 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:18:03] 2025-06-04 09:29:04,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:18:03] 2025-06-04 09:29:04,775 [wrapper] pilotpid: 12982
[2025-06-04 14:18:03] 2025-06-04 09:29:04,847 [wrapper] Pilot exit status: 0
[2025-06-04 14:18:03] 2025-06-04 09:29:05,213 [wrapper] pandaids: 6677862520
[2025-06-04 14:18:03] 2025-06-04 09:29:06,030 [wrapper] cleanup supervisor_pilot 20561 12983
[2025-06-04 14:18:03] 2025-06-04 09:29:06,135 [wrapper] Test setup, not cleaning
[2025-06-04 14:18:03] 2025-06-04 09:29:06,234 [wrapper] apfmon messages muted
[2025-06-04 14:18:03] 2025-06-04 09:29:06,319 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:18:03] 2025-06-04 09:29:06,370 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:18:03]  *** Error codes and diagnostics ***
[2025-06-04 14:18:03]     "exeErrorCode": 0,
[2025-06-04 14:18:03]     "exeErrorDiag": "",
[2025-06-04 14:18:03]     "pilotErrorCode": 0,
[2025-06-04 14:18:03]     "pilotErrorDiag": "",
[2025-06-04 14:18:03]  *** Listing of results directory ***
[2025-06-04 14:18:03] total 391880
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:20 queuedata.json
[2025-06-04 14:18:03] -rwx------. 1 boinc boinc     37140 Jun  3 19:21 runpilot2-wrapper.sh
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:18:03] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:22 run_atlas
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:22 job.xml
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc      6389 Jun  4 07:22 init_data.xml
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc 216818901 Jun  4 07:22 EVNT.45006593._001623.pool.root.1
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:22 start_atlas.sh
[2025-06-04 14:18:03] drwxrwx--x. 2 boinc boinc        68 Jun  4 07:22 shared
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc    508881 Jun  4 07:22 input.tar.gz
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:22 boinc_lockfile
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc      2525 Jun  4 07:33 pandaJob.out
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc    986745 Jun  4 07:37 agis_schedconf.cvmfs.json
[2025-06-04 14:18:03] drwx------. 4 boinc boinc      4096 Jun  4 07:37 pilot3
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc 177489977 Jun  4 11:26 HITS.45006595._040510.pool.root.1
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc       531 Jun  4 11:26 boinc_task_state.xml
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc      1019 Jun  4 11:27 memory_monitor_summary.json
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc   1603667 Jun  4 11:27 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc    390309 Jun  4 11:27 log.45006595._040510.job.log.tgz.1
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc      7692 Jun  4 11:28 heartbeat.json
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc        95 Jun  4 11:28 pilot_heartbeat.json
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc      4602 Jun  4 11:29 pilotlog.txt
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc   1186501 Jun  4 11:29 log.45006595._040510.job.log.1
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc       357 Jun  4 11:29 output.list
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:29 runtime_log
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc   1597440 Jun  4 11:29 result.tar.gz
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc      8659 Jun  4 11:29 runtime_log.err
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc       657 Jun  4 11:29 9b2LDmHVkg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6PZKDm5bkBqn.diag
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc      8192 Jun  4 14:18 boinc_mmap_file
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc        28 Jun  4 14:18 wrapper_checkpoint.txt
[2025-06-04 14:18:03] -rw-r--r--. 1 boinc boinc     20492 Jun  4 14:18 stderr.txt
[2025-06-04 14:18:03] HITS file was successfully produced:
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc 177489977 Jun  4 11:26 shared/HITS.pool.root.1
[2025-06-04 14:18:03]  *** Contents of shared directory: ***
[2025-06-04 14:18:03] total 387148
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc 216818901 Jun  4 07:22 ATLAS.root_0
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:22 start_atlas.sh
[2025-06-04 14:18:03] -rw-r--r--. 2 boinc boinc    508881 Jun  4 07:22 input.tar.gz
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc 177489977 Jun  4 11:26 HITS.pool.root.1
[2025-06-04 14:18:03] -rw-------. 1 boinc boinc   1597440 Jun  4 11:29 result.tar.gz
14:18:04 (4857): run_atlas exited; CPU time 48889.273130
14:18:04 (4857): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN