Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:02:10 (3304414): wrapper (7.7.26015): starting
09:02:10 (3304414): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 09:02:10] Arguments: --nthreads 4
[2025-06-05 09:02:10] Threads: 4
[2025-06-05 09:02:10] Checking for CVMFS
[2025-06-05 09:02:10] No cvmfs_config command found, will try listing directly
[2025-06-05 09:02:10] CVMFS is ok
[2025-06-05 09:02:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 09:02:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 09:02:10] Further information can be found at the LHC@home message board.
[2025-06-05 09:02:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 09:02:10] Checking for apptainer binary...
[2025-06-05 09:02:10] which: no apptainer in ((null))
[2025-06-05 09:02:10] apptainer is not installed, using version from CVMFS
[2025-06-05 09:02:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 09:02:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 09:02:10] apptainer works
[2025-06-05 09:02:10] Set ATHENA_PROC_NUMBER=4
[2025-06-05 09:02:10] Set ATHENA_CORE_NUMBER=4
[2025-06-05 09:02:10] Starting ATLAS job with PandaID=6677861979
[2025-06-05 09:02:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 11:20:39]  *** The last 200 lines of the pilot log: ***
[2025-06-05 11:20:39] 2025-06-05 09:19:03,045 | WARNING  | process 3329075 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 11:20:39] 2025-06-05 09:19:03,048 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6677861979/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:20:39] 2025-06-05 09:19:03,720 | INFO     | number of running child processes to parent process 3329075: 1
[2025-06-05 11:20:39] 2025-06-05 09:19:03,721 | INFO     | maximum number of monitored processes: 6
[2025-06-05 11:20:39] 2025-06-05 09:19:06,224 | INFO     | monitor loop #568: job 0:6677861979 is in state 'finished'
[2025-06-05 11:20:39] 2025-06-05 09:19:06,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,814 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 11:20:39] 2025-06-05 09:19:06,815 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6677861979/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,815 | INFO     | extracted standard info from prmon json
[2025-06-05 11:20:39] 2025-06-05 09:19:06,815 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 11:20:39] 2025-06-05 09:19:06,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 11:20:39] 2025-06-05 09:19:06,816 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 11:20:39] 2025-06-05 09:19:06,816 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 11:20:39] 2025-06-05 09:19:06,819 | INFO     | fitting pss+swap vs Time
[2025-06-05 11:20:39] 2025-06-05 09:19:06,819 | INFO     | sum of square deviations: 746051197.5
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | sum of deviations: 21157414399.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | mean x: 1749111034.5
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | mean y: 2281380.3880597013
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | -- intersect: -49601106578.49272
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | intersect: -49601106578.49272
[2025-06-05 11:20:39] 2025-06-05 09:19:06,820 | INFO     | chi2: 1.6062430539715542
[2025-06-05 11:20:39] 2025-06-05 09:19:06,821 | INFO     | sum of square deviations: 665612480.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,821 | INFO     | sum of deviations: 20300690200.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,821 | INFO     | mean x: 1749110882.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,821 | INFO     | mean y: 2279755.4573643412
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | -- intersect: -53344313356.69515
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | intersect: -53344313356.69515
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | chi2: 1.6080362786743265
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | current chi2=1.6080362786743265 (change=-0.11164093119895163 %)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | right removable region: 128
[2025-06-05 11:20:39] 2025-06-05 09:19:06,822 | INFO     | sum of square deviations: 665612480.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,823 | INFO     | sum of deviations: 556714060.0000002
[2025-06-05 11:20:39] 2025-06-05 09:19:06,823 | INFO     | mean x: 1749111187.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,823 | INFO     | mean y: 2319829.1472868216
[2025-06-05 11:20:39] 2025-06-05 09:19:06,823 | INFO     | -- intersect: -1460625682.7911155
[2025-06-05 11:20:39] 2025-06-05 09:19:06,823 | INFO     | intersect: -1460625682.7911155
[2025-06-05 11:20:39] 2025-06-05 09:19:06,824 | INFO     | chi2: 0.002103224683131275
[2025-06-05 11:20:39] 2025-06-05 09:19:06,824 | INFO     | current chi2=0.002103224683131275 (change=99.86905937566978 %)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,824 | INFO     | sum of square deviations: 591173875.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | sum of deviations: 523349713.4999999
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | mean x: 1749111339.5
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | mean y: 2319886.7983870967
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | -- intersect: -1546119509.9982424
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | intersect: -1546119509.9982424
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | chi2: 0.0019594346806733084
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | current chi2=0.0019594346806733084 (change=6.836644872572167 %)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,825 | INFO     | left removable region: 20
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | sum of square deviations: 390582207.0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | sum of deviations: 1076252066.5
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | mean x: 1749111461.5
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | mean y: 2318137.1944444445
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | -- intersect: -4817371012.081652
[2025-06-05 11:20:39] 2025-06-05 09:19:06,826 | INFO     | intersect: -4817371012.081652
[2025-06-05 11:20:39] 2025-06-05 09:19:06,827 | INFO     | chi2: 0.00011681688610931422
[2025-06-05 11:20:39] 2025-06-05 09:19:06,827 | INFO     | -- intersect: -4817371012.081652
[2025-06-05 11:20:39] 2025-06-05 09:19:06,827 | INFO     | current memory leak: 2.76 B/s (using 108 data points, chi2=0.00)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,827 | INFO     | ..............................
[2025-06-05 11:20:39] 2025-06-05 09:19:06,827 | INFO     | . Timing measurements:
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . get job = 0 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . initial setup = 1 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . payload setup = 9 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . stage-in = 0 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . payload execution = 8162 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . stage-out = 0 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | . log creation = 0 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,828 | INFO     | ..............................
[2025-06-05 11:20:39] 2025-06-05 09:19:06,923 | INFO     | 
[2025-06-05 11:20:39] 2025-06-05 09:19:06,923 | INFO     | job summary report
[2025-06-05 11:20:39] 2025-06-05 09:19:06,923 | INFO     | --------------------------------------------------
[2025-06-05 11:20:39] 2025-06-05 09:19:06,923 | INFO     | PanDA job id: 6677861979
[2025-06-05 11:20:39] 2025-06-05 09:19:06,923 | INFO     | task id: 45006595
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | errors: (none)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | pilot state: finished 
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | transexitcode: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | exeerrorcode: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | exeerrordiag: 
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | exitcode: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | exitmsg: OK
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | cpuconsumptiontime: 30989 s
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | nevents: 400
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | neventsw: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | pid: 3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:06,924 | INFO     | pgrp: 3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | corecount: 4
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | event service: False
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | sizes: {0: 2397354, 7: 2397560, 11: 2397588, 8176: 2425631, 8177: 2434596, 8179: 2434652, 8186: 2434950}
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | --------------------------------------------------
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | 
[2025-06-05 11:20:39] 2025-06-05 09:19:06,925 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-06-05 11:20:39] 2025-06-05 09:19:06,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | job 6677861979 has completed (purged errors)
[2025-06-05 11:20:39] 2025-06-05 09:19:06,958 | INFO     | overall cleanup function is called
[2025-06-05 11:20:39] 2025-06-05 09:19:07,968 | INFO     | --- collectZombieJob: --- 10, [3329075]
[2025-06-05 11:20:39] 2025-06-05 09:19:07,968 | INFO     | zombie collector waiting for pid 3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:07,968 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 11:20:39] 2025-06-05 09:19:07,968 | INFO     | collected zombie processes
[2025-06-05 11:20:39] 2025-06-05 09:19:07,968 | INFO     | will attempt to kill all subprocesses of pid=3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:08,624 | INFO     | process IDs to be killed: [3329075] (in reverse order)
[2025-06-05 11:20:39] 2025-06-05 09:19:08,864 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 11:20:39] 2025-06-05 09:19:08,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 11:20:39] 2025-06-05 09:19:08,892 | INFO     | did not find any defunct processes belonging to 3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:08,918 | INFO     | did not find any defunct processes belonging to 3329075
[2025-06-05 11:20:39] 2025-06-05 09:19:08,919 | INFO     | ready for new job
[2025-06-05 11:20:39] 2025-06-05 09:19:08,919 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 11:20:39] 2025-06-05 09:19:08,921 | INFO     | **************************************
[2025-06-05 11:20:39] 2025-06-05 09:19:08,922 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 11:20:39] 2025-06-05 09:19:08,922 | INFO     | **************************************
[2025-06-05 11:20:39] 2025-06-05 09:19:08,922 | INFO     | 
[2025-06-05 11:20:39] 2025-06-05 09:19:08,931 | INFO     | architecture information:
[2025-06-05 11:20:39] 2025-06-05 09:19:08,931 | INFO     | executing command: cat /etc/os-release
[2025-06-05 11:20:39] 2025-06-05 09:19:08,953 | INFO     | cat /etc/os-release:
[2025-06-05 11:20:39] NAME="CentOS Linux"
[2025-06-05 11:20:39] VERSION="7 (Core)"
[2025-06-05 11:20:39] ID="centos"
[2025-06-05 11:20:39] ID_LIKE="rhel fedora"
[2025-06-05 11:20:39] VERSION_ID="7"
[2025-06-05 11:20:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 11:20:39] ANSI_COLOR="0;31"
[2025-06-05 11:20:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 11:20:39] HOME_URL="https://www.centos.org/"
[2025-06-05 11:20:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 11:20:39] 
[2025-06-05 11:20:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 11:20:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 11:20:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 11:20:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 11:20:39] 
[2025-06-05 11:20:39] 2025-06-05 09:19:08,953 | INFO     | **************************************
[2025-06-05 11:20:39] 2025-06-05 09:19:09,454 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-06-05 11:20:39] 2025-06-05 09:19:09,476 | INFO     | sufficient remaining disk space (3280859037696 B)
[2025-06-05 11:20:39] 2025-06-05 09:19:09,476 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 11:20:39] 2025-06-05 09:19:09,476 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 11:20:39] 2025-06-05 09:19:09,476 | INFO     | update_server=False
[2025-06-05 11:20:39] 2025-06-05 09:19:09,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 11:20:39] 2025-06-05 09:19:09,477 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 11:20:39] 2025-06-05 09:19:09,477 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 11:20:39] 2025-06-05 09:19:09,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 11:20:39] 2025-06-05 09:19:09,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 11:20:39] 2025-06-05 09:19:09,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:20:39] 2025-06-05 09:19:09,737 | INFO     | aborting loop
[2025-06-05 11:20:39] 2025-06-05 09:19:09,752 | INFO     | all payload control threads have been joined
[2025-06-05 11:20:39] 2025-06-05 09:19:09,876 | INFO     | all data control threads have been joined
[2025-06-05 11:20:39] 2025-06-05 09:19:10,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 11:20:39] 2025-06-05 09:19:10,482 | INFO     | [job] retrieve thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:10,588 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:10,720 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 11:20:39] 2025-06-05 09:19:10,725 | INFO     | all job control threads have been joined
[2025-06-05 11:20:39] 2025-06-05 09:19:10,742 | INFO     | [job] job monitor thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:10,757 | INFO     | [payload] control thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:10,801 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:10,881 | INFO     | [data] control thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,041 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,188 | INFO     | [payload] failed_post thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,731 | INFO     | [job] control thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,737 | INFO     | [job] validate thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,855 | INFO     | [data] copytool_in thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:11,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 11:20:39] 2025-06-05 09:19:12,052 | INFO     | [payload] validate_post thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:12,725 | INFO     | [data] copytool_out thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:12,937 | INFO     | [job] queue monitor thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:14,419 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:19,975 | INFO     | job.realtimelogging is not enabled
[2025-06-05 11:20:39] 2025-06-05 09:19:20,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 11:20:39] 2025-06-05 09:19:22,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22494919849792)>', '<ExcThread(monitor, started 22494469646080)>']
[2025-06-05 11:20:39] 2025-06-05 09:19:23,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 11:20:39] 2025-06-05 09:19:23,548 | INFO     | [monitor] control thread has ended
[2025-06-05 11:20:39] 2025-06-05 09:19:27,823 | INFO     | all workflow threads have been joined
[2025-06-05 11:20:39] 2025-06-05 09:19:27,823 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 11:20:39] 2025-06-05 09:19:27,823 | INFO     | traces error code: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:27,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 11:20:39] 2025-06-05 09:19:27,963 [wrapper] ==== pilot stdout END ====
[2025-06-05 11:20:39] 2025-06-05 09:19:27,967 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 11:20:39] 2025-06-05 09:19:27,971 [wrapper] pilotpid: 3310869
[2025-06-05 11:20:39] 2025-06-05 09:19:27,975 [wrapper] Pilot exit status: 0
[2025-06-05 11:20:39] 2025-06-05 09:19:27,991 [wrapper] pandaids: 6677861979
[2025-06-05 11:20:39] 2025-06-05 09:19:28,149 [wrapper] cleanup supervisor_pilot 3816774 3310871
[2025-06-05 11:20:39] 2025-06-05 09:19:28,153 [wrapper] Test setup, not cleaning
[2025-06-05 11:20:39] 2025-06-05 09:19:28,157 [wrapper] apfmon messages muted
[2025-06-05 11:20:39] 2025-06-05 09:19:28,161 [wrapper] ==== wrapper stdout END ====
[2025-06-05 11:20:39] 2025-06-05 09:19:28,165 [wrapper] ==== wrapper stderr END ====
[2025-06-05 11:20:39]  *** Error codes and diagnostics ***
[2025-06-05 11:20:39]     "exeErrorCode": 0,
[2025-06-05 11:20:39]     "exeErrorDiag": "",
[2025-06-05 11:20:39]     "pilotErrorCode": 0,
[2025-06-05 11:20:39]     "pilotErrorDiag": "",
[2025-06-05 11:20:39]  *** Listing of results directory ***
[2025-06-05 11:20:39] total 386852
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc      5111 Jun  3 19:16 queuedata.json
[2025-06-05 11:20:39] -rwx------ 1 boinc boinc     37140 Jun  3 19:18 runpilot2-wrapper.sh
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc       100 Jun  5 09:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 11:20:39] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 09:02 run_atlas
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc       105 Jun  5 09:02 job.xml
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc      6687 Jun  5 09:02 init_data.xml
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc 213907076 Jun  5 09:02 EVNT.45006593._001608.pool.root.1
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc     15093 Jun  5 09:02 start_atlas.sh
[2025-06-05 11:20:39] drwxrwx--x 2 boinc boinc      4096 Jun  5 09:02 shared
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc    508881 Jun  5 09:02 input.tar.gz
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc         0 Jun  5 09:02 boinc_lockfile
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc      2525 Jun  5 09:02 pandaJob.out
[2025-06-05 11:20:39] -rw------- 1 boinc boinc    986926 Jun  5 09:02 agis_schedconf.cvmfs.json
[2025-06-05 11:20:39] -rw------- 1 boinc boinc   1598969 Jun  5 09:02 agis_ddmendpoints.agis.ALL.json
[2025-06-05 11:20:39] drwx------ 4 boinc boinc      4096 Jun  5 09:02 pilot3
[2025-06-05 11:20:39] -rw------- 1 boinc boinc 176287034 Jun  5 11:18 HITS.45006595._040130.pool.root.1
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc       529 Jun  5 11:18 boinc_task_state.xml
[2025-06-05 11:20:39] -rw------- 1 boinc boinc      1030 Jun  5 11:18 memory_monitor_summary.json
[2025-06-05 11:20:39] -rw------- 1 boinc boinc    277155 Jun  5 11:18 log.45006595._040130.job.log.tgz.1
[2025-06-05 11:20:39] -rw------- 1 boinc boinc      7709 Jun  5 11:19 heartbeat.json
[2025-06-05 11:20:39] -rw------- 1 boinc boinc        95 Jun  5 11:19 pilot_heartbeat.json
[2025-06-05 11:20:39] -rw------- 1 boinc boinc      4560 Jun  5 11:19 pilotlog.txt
[2025-06-05 11:20:39] -rw------- 1 boinc boinc    774549 Jun  5 11:19 log.45006595._040130.job.log.1
[2025-06-05 11:20:39] -rw------- 1 boinc boinc       357 Jun  5 11:19 output.list
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc       620 Jun  5 11:19 runtime_log
[2025-06-05 11:20:39] -rw------- 1 boinc boinc   1075200 Jun  5 11:19 result.tar.gz
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc      9040 Jun  5 11:19 runtime_log.err
[2025-06-05 11:20:39] -rw------- 1 boinc boinc       662 Jun  5 11:19 hmCMDmKSkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7IlKDmbJJUhn.diag
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc        27 Jun  5 11:20 wrapper_checkpoint.txt
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc      8192 Jun  5 11:20 boinc_mmap_file
[2025-06-05 11:20:39] -rw-r--r-- 1 boinc boinc     20888 Jun  5 11:20 stderr.txt
[2025-06-05 11:20:39] HITS file was successfully produced:
[2025-06-05 11:20:39] -rw------- 1 boinc boinc 176287034 Jun  5 11:18 shared/HITS.pool.root.1
[2025-06-05 11:20:39]  *** Contents of shared directory: ***
[2025-06-05 11:20:39] total 382628
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc 213907076 Jun  5 09:02 ATLAS.root_0
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc     15093 Jun  5 09:02 start_atlas.sh
[2025-06-05 11:20:39] -rw-r--r-- 2 boinc boinc    508881 Jun  5 09:02 input.tar.gz
[2025-06-05 11:20:39] -rw------- 1 boinc boinc 176287034 Jun  5 11:18 HITS.pool.root.1
[2025-06-05 11:20:39] -rw------- 1 boinc boinc   1075200 Jun  5 11:19 result.tar.gz
11:20:40 (3304414): run_atlas exited; CPU time 31484.210720
11:20:40 (3304414): called boinc_finish(0)

</stderr_txt>
]]>

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