Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:10:35 (9722): wrapper (7.7.26015): starting
05:10:35 (9722): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:10:35] Arguments: --nthreads 8
[2025-06-04 05:10:35] Threads: 8
[2025-06-04 05:10:35] Checking for CVMFS
[2025-06-04 05:10:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:10:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:10:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:10:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:10:37] 2.11.2.0 15360 32644 100164 146765 3 16 12849425 25165825 3513 130560 0 16945183 99.776 18874507 2130 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 05:10:37] CVMFS is ok
[2025-06-04 05:10:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:10:37] Checking for apptainer binary...
[2025-06-04 05:10:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:10:37] Running /usr/bin/apptainer --version
[2025-06-04 05:10:37] apptainer version 1.3.2-1.el7
[2025-06-04 05:10:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:38:11] cg-vwn250.simple-grid.lan
[2025-06-04 05:38:11] apptainer works
[2025-06-04 05:38:12] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:38:12] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:38:12] Starting ATLAS job with PandaID=6677675778
[2025-06-04 05:38:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:46:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:46:49] 2025-06-04 07:37:24,088 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6677675778/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,089 | INFO     | extracted standard info from prmon json
[2025-06-04 09:46:49] 2025-06-04 07:37:24,089 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:46:49] 2025-06-04 07:37:24,089 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:46:49] 2025-06-04 07:37:24,089 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:46:49] 2025-06-04 07:37:24,089 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:46:49] 2025-06-04 07:37:24,094 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:46:49] 2025-06-04 07:37:24,095 | INFO     | sum of square deviations: 3922276332.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,097 | INFO     | sum of deviations: 25514266260.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,097 | INFO     | mean x: 1749015453.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,097 | INFO     | mean y: 2462975.39055794
[2025-06-04 09:46:49] 2025-06-04 07:37:24,098 | INFO     | -- intersect: -11374819547.164896
[2025-06-04 09:46:49] 2025-06-04 07:37:24,098 | INFO     | intersect: -11374819547.164896
[2025-06-04 09:46:49] 2025-06-04 07:37:24,108 | INFO     | chi2: 2.4308430929058424
[2025-06-04 09:46:49] 2025-06-04 07:37:24,108 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,110 | INFO     | sum of deviations: 40056370776.00001
[2025-06-04 09:46:49] 2025-06-04 07:37:24,110 | INFO     | mean x: 1749015300.5
[2025-06-04 09:46:49] 2025-06-04 07:37:24,110 | INFO     | mean y: 2471784.298245614
[2025-06-04 09:46:49] 2025-06-04 07:37:24,110 | INFO     | -- intersect: -19060499629.45169
[2025-06-04 09:46:49] 2025-06-04 07:37:24,110 | INFO     | intersect: -19060499629.45169
[2025-06-04 09:46:49] 2025-06-04 07:37:24,111 | INFO     | chi2: 1.6636300314123187
[2025-06-04 09:46:49] 2025-06-04 07:37:24,111 | INFO     | current chi2=1.6636300314123187 (change=31.5616036153281 %)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,111 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,113 | INFO     | sum of deviations: 38990342340.00001
[2025-06-04 09:46:49] 2025-06-04 07:37:24,113 | INFO     | mean x: 1749015148.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,113 | INFO     | mean y: 2471096.883408072
[2025-06-04 09:46:49] 2025-06-04 07:37:24,113 | INFO     | -- intersect: -19829520941.989098
[2025-06-04 09:46:49] 2025-06-04 07:37:24,114 | INFO     | intersect: -19829520941.989098
[2025-06-04 09:46:49] 2025-06-04 07:37:24,114 | INFO     | chi2: 1.664489887519842
[2025-06-04 09:46:49] 2025-06-04 07:37:24,114 | INFO     | current chi2=1.664489887519842 (change=-0.05168553652480629 %)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,114 | INFO     | right removable region: 222
[2025-06-04 09:46:49] 2025-06-04 07:37:24,115 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,116 | INFO     | sum of deviations: -14350220415.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | mean x: 1749015605.5
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | mean y: 2487372.307017544
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | -- intersect: 6831810247.9611845
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | intersect: 6831810247.9611845
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | chi2: 0.8451515686936002
[2025-06-04 09:46:49] 2025-06-04 07:37:24,117 | INFO     | current chi2=0.8451515686936002 (change=65.23216281790934 %)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,118 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,119 | INFO     | sum of deviations: -14779390856.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | mean x: 1749015758.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | mean y: 2487626.538116592
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | -- intersect: 7519858504.309492
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | intersect: 7519858504.309492
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | chi2: 0.8349366173126673
[2025-06-04 09:46:49] 2025-06-04 07:37:24,120 | INFO     | current chi2=0.8349366173126673 (change=1.2086531882941083 %)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,121 | INFO     | left removable region: 20
[2025-06-04 09:46:49] 2025-06-04 07:37:24,130 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 09:46:49] 2025-06-04 07:37:24,132 | INFO     | sum of deviations: 5738466359.0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,132 | INFO     | mean x: 1749015727.5
[2025-06-04 09:46:49] 2025-06-04 07:37:24,132 | INFO     | mean y: 2492866.9702970297
[2025-06-04 09:46:49] 2025-06-04 07:37:24,132 | INFO     | -- intersect: -3924568301.853072
[2025-06-04 09:46:49] 2025-06-04 07:37:24,132 | INFO     | intersect: -3924568301.853072
[2025-06-04 09:46:49] 2025-06-04 07:37:24,133 | INFO     | chi2: 0.0006660700952051566
[2025-06-04 09:46:49] 2025-06-04 07:37:24,133 | INFO     | -- intersect: -3924568301.853072
[2025-06-04 09:46:49] 2025-06-04 07:37:24,133 | INFO     | current memory leak: 2.25 B/s (using 202 data points, chi2=0.00)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | ..............................
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | . Timing measurements:
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | . get job = 0 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | . initial setup = 2 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | . payload setup = 15 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,134 | INFO     | . stage-in = 0 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,135 | INFO     | . payload execution = 14190 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,135 | INFO     | . stage-out = 3 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,135 | INFO     | . log creation = 1 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,135 | INFO     | ..............................
[2025-06-04 09:46:49] 2025-06-04 07:37:24,499 | INFO     | 
[2025-06-04 09:46:49] 2025-06-04 07:37:24,499 | INFO     | job summary report
[2025-06-04 09:46:49] 2025-06-04 07:37:24,499 | INFO     | --------------------------------------------------
[2025-06-04 09:46:49] 2025-06-04 07:37:24,499 | INFO     | PanDA job id: 6677675778
[2025-06-04 09:46:49] 2025-06-04 07:37:24,499 | INFO     | task id: 45006595
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | errors: (none)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | pilot state: finished 
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | transexitcode: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | exeerrorcode: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | exeerrordiag: 
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | exitcode: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | exitmsg: OK
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | cpuconsumptiontime: 53698 s
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | nevents: 400
[2025-06-04 09:46:49] 2025-06-04 07:37:24,500 | INFO     | neventsw: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | pid: 2001
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | pgrp: 2001
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | corecount: 8
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | event service: False
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | sizes: {0: 2404354, 1: 2405211, 2: 2405211, 8: 2405445, 12: 2405473, 14210: 2435499, 14214: 2444442, 14217: 2444498, 14304: 2444668}
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | --------------------------------------------------
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | 
[2025-06-04 09:46:49] 2025-06-04 07:37:24,501 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 09:46:49] 2025-06-04 07:37:24,799 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,799 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,799 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,799 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,800 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | job 6677675778 has completed (purged errors)
[2025-06-04 09:46:49] 2025-06-04 07:37:24,801 | INFO     | overall cleanup function is called
[2025-06-04 09:46:49] 2025-06-04 07:37:25,811 | INFO     | --- collectZombieJob: --- 10, [2001]
[2025-06-04 09:46:49] 2025-06-04 07:37:25,811 | INFO     | zombie collector waiting for pid 2001
[2025-06-04 09:46:49] 2025-06-04 07:37:25,811 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:46:49] 2025-06-04 07:37:25,811 | INFO     | collected zombie processes
[2025-06-04 09:46:49] 2025-06-04 07:37:25,811 | INFO     | will attempt to kill all subprocesses of pid=2001
[2025-06-04 09:46:49] 2025-06-04 07:37:25,946 | INFO     | process IDs to be killed: [2001] (in reverse order)
[2025-06-04 09:46:49] 2025-06-04 07:37:26,723 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:46:49] 2025-06-04 07:37:26,723 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:46:49] 2025-06-04 07:37:26,727 | INFO     | did not find any defunct processes belonging to 2001
[2025-06-04 09:46:49] 2025-06-04 07:37:26,730 | INFO     | did not find any defunct processes belonging to 2001
[2025-06-04 09:46:49] 2025-06-04 07:37:26,731 | INFO     | ready for new job
[2025-06-04 09:46:49] 2025-06-04 07:37:26,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:46:49] 2025-06-04 07:37:26,733 | INFO     | **************************************
[2025-06-04 09:46:49] 2025-06-04 07:37:26,733 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:46:49] 2025-06-04 07:37:26,733 | INFO     | **************************************
[2025-06-04 09:46:49] 2025-06-04 07:37:26,733 | INFO     | 
[2025-06-04 09:46:49] 2025-06-04 07:37:26,734 | INFO     | pilot is running in a VM
[2025-06-04 09:46:49] 2025-06-04 07:37:26,734 | INFO     | architecture information:
[2025-06-04 09:46:49] 2025-06-04 07:37:26,735 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:46:49] 2025-06-04 07:37:26,924 | INFO     | cat /etc/os-release:
[2025-06-04 09:46:49] NAME="CentOS Linux"
[2025-06-04 09:46:49] VERSION="7 (Core)"
[2025-06-04 09:46:49] ID="centos"
[2025-06-04 09:46:49] ID_LIKE="rhel fedora"
[2025-06-04 09:46:49] VERSION_ID="7"
[2025-06-04 09:46:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:46:49] ANSI_COLOR="0;31"
[2025-06-04 09:46:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:46:49] HOME_URL="https://www.centos.org/"
[2025-06-04 09:46:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:46:49] 
[2025-06-04 09:46:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:46:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:46:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:46:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:46:49] 
[2025-06-04 09:46:49] 2025-06-04 07:37:26,924 | INFO     | **************************************
[2025-06-04 09:46:49] 2025-06-04 07:37:27,428 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 09:46:49] 2025-06-04 07:37:27,645 | INFO     | sufficient remaining disk space (497162387456 B)
[2025-06-04 09:46:49] 2025-06-04 07:37:27,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:46:49] 2025-06-04 07:37:27,646 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:46:49] 2025-06-04 07:37:27,646 | INFO     | update_server=False
[2025-06-04 09:46:49] 2025-06-04 07:37:27,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:46:49] 2025-06-04 07:37:27,665 | INFO     | all payload control threads have been joined
[2025-06-04 09:46:49] 2025-06-04 07:37:27,670 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:46:49] 2025-06-04 07:37:27,883 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:46:49] 2025-06-04 07:37:27,883 | INFO     | aborting loop
[2025-06-04 09:46:49] 2025-06-04 07:37:28,107 | INFO     | all data control threads have been joined
[2025-06-04 09:46:49] 2025-06-04 07:37:28,321 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:46:49] 2025-06-04 07:37:28,321 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:46:49] 2025-06-04 07:37:28,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:46:49] 2025-06-04 07:37:28,652 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:28,668 | INFO     | all job control threads have been joined
[2025-06-04 09:46:49] 2025-06-04 07:37:28,675 | INFO     | [payload] control thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:28,683 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:28,839 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:46:49] 2025-06-04 07:37:28,889 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,113 | INFO     | [data] control thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,185 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,186 | INFO     | [job] validate thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:46:49] 2025-06-04 07:37:29,308 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,644 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,674 | INFO     | [job] control thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,676 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,789 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:29,815 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:30,298 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:32,848 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:46:49] 2025-06-04 07:37:32,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923248486208)>', '<ExcThread(monitor, started 139922577024768)>']
[2025-06-04 09:46:49] 2025-06-04 07:37:33,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:46:49] 2025-06-04 07:37:33,351 | INFO     | [monitor] control thread has ended
[2025-06-04 09:46:49] 2025-06-04 07:37:37,946 | INFO     | all workflow threads have been joined
[2025-06-04 09:46:49] 2025-06-04 07:37:37,946 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:46:49] 2025-06-04 07:37:37,946 | INFO     | traces error code: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:37,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:46:49] 2025-06-04 07:37:38,238 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:46:49] 2025-06-04 07:37:38,268 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:46:49] 2025-06-04 07:37:38,306 [wrapper] pilotpid: 25887
[2025-06-04 09:46:49] 2025-06-04 07:37:38,347 [wrapper] Pilot exit status: 0
[2025-06-04 09:46:49] 2025-06-04 07:37:38,671 [wrapper] pandaids: 6677675778
[2025-06-04 09:46:49] 2025-06-04 07:37:39,623 [wrapper] cleanup supervisor_pilot 20248 25888
[2025-06-04 09:46:49] 2025-06-04 07:37:39,684 [wrapper] Test setup, not cleaning
[2025-06-04 09:46:49] 2025-06-04 07:37:39,765 [wrapper] apfmon messages muted
[2025-06-04 09:46:49] 2025-06-04 07:37:39,824 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:46:49] 2025-06-04 07:37:39,931 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:46:49]  *** Error codes and diagnostics ***
[2025-06-04 09:46:49]     "exeErrorCode": 0,
[2025-06-04 09:46:49]     "exeErrorDiag": "",
[2025-06-04 09:46:49]     "pilotErrorCode": 0,
[2025-06-04 09:46:49]     "pilotErrorDiag": "",
[2025-06-04 09:46:49]  *** Listing of results directory ***
[2025-06-04 09:46:49] total 398448
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:52 pilot3.tar.gz
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc      5111 Jun  3 16:52 queuedata.json
[2025-06-04 09:46:49] -rwx------. 1 boinc boinc     37140 Jun  3 16:53 runpilot2-wrapper.sh
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc       100 Jun  4 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:46:49] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 05:10 run_atlas
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc       105 Jun  4 05:10 job.xml
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc      6393 Jun  4 05:10 init_data.xml
[2025-06-04 09:46:49] -rw-r--r--. 2 boinc boinc 214297226 Jun  4 05:10 EVNT.45006593._001450.pool.root.1
[2025-06-04 09:46:49] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:10 start_atlas.sh
[2025-06-04 09:46:49] drwxrwx--x. 2 boinc boinc        68 Jun  4 05:10 shared
[2025-06-04 09:46:49] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:10 input.tar.gz
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc         0 Jun  4 05:10 boinc_lockfile
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc      2524 Jun  4 05:38 pandaJob.out
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc    986077 Jun  4 05:38 agis_schedconf.cvmfs.json
[2025-06-04 09:46:49] drwx------. 4 boinc boinc      4096 Jun  4 05:38 pilot3
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc 186674301 Jun  4 09:34 HITS.45006595._036078.pool.root.1
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc       531 Jun  4 09:34 boinc_task_state.xml
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc      1017 Jun  4 09:35 memory_monitor_summary.json
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc   1603667 Jun  4 09:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc    374785 Jun  4 09:35 log.45006595._036078.job.log.tgz.1
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc        95 Jun  4 09:36 pilot_heartbeat.json
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc      7685 Jun  4 09:37 heartbeat.json
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc      4417 Jun  4 09:37 pilotlog.txt
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc   1233636 Jun  4 09:37 log.45006595._036078.job.log.1
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc       357 Jun  4 09:37 output.list
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc       620 Jun  4 09:37 runtime_log
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc   1628160 Jun  4 09:37 result.tar.gz
[2025-06-04 09:46:49] -rw-------. 1 boinc boinc       657 Jun  4 09:37 YNoLDm5Big7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkekKDm9AY9Fo.diag
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc      8673 Jun  4 09:37 runtime_log.err
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc      8192 Jun  4 09:46 boinc_mmap_file
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc        28 Jun  4 09:46 wrapper_checkpoint.txt
[2025-06-04 09:46:49] -rw-r--r--. 1 boinc boinc     20486 Jun  4 09:46 stderr.txt
[2025-06-04 09:46:50] HITS file was successfully produced:
[2025-06-04 09:46:50] -rw-------. 1 boinc boinc 186674301 Jun  4 09:34 shared/HITS.pool.root.1
[2025-06-04 09:46:50]  *** Contents of shared directory: ***
[2025-06-04 09:46:50] total 393684
[2025-06-04 09:46:50] -rw-r--r--. 2 boinc boinc 214297226 Jun  4 05:10 ATLAS.root_0
[2025-06-04 09:46:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:10 start_atlas.sh
[2025-06-04 09:46:50] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:10 input.tar.gz
[2025-06-04 09:46:50] -rw-------. 1 boinc boinc 186674301 Jun  4 09:34 HITS.pool.root.1
[2025-06-04 09:46:50] -rw-------. 1 boinc boinc   1628160 Jun  4 09:37 result.tar.gz
09:46:51 (9722): run_atlas exited; CPU time 53877.611201
09:46:51 (9722): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN