Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:07:29 (11886): wrapper (7.7.26015): starting
06:07:29 (11886): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:07:29] Arguments: --nthreads 8
[2025-06-04 06:07:29] Threads: 8
[2025-06-04 06:07:29] Checking for CVMFS
[2025-06-04 06:07:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:07:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:07:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:07:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:07:31] 2.11.2.0 6428 32695 95044 146767 1 59 17823929 25165824 3910 130560 0 17839012 99.848 19019599 2114 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:07:31] CVMFS is ok
[2025-06-04 06:07:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:07:31] Checking for apptainer binary...
[2025-06-04 06:07:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:07:31] Running /usr/bin/apptainer --version
[2025-06-04 06:07:31] apptainer version 1.3.2-1.el7
[2025-06-04 06:07:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:38:07] cg-vwn335.simple-grid.lan
[2025-06-04 06:38:07] apptainer works
[2025-06-04 06:38:07] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:38:07] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:38:07] Starting ATLAS job with PandaID=6677920905
[2025-06-04 06:38:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:44:30]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:44:31] 2025-06-04 08:31:23,426 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:44:31] 2025-06-04 08:31:23,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:44:31] 2025-06-04 08:31:23,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:44:31] 2025-06-04 08:31:23,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:44:31] 2025-06-04 08:31:23,433 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:44:31] 2025-06-04 08:31:23,434 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,435 | INFO     | sum of deviations: 88726150904.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,436 | INFO     | mean x: 1749019157.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,436 | INFO     | mean y: 2417221.064516129
[2025-06-04 10:44:31] 2025-06-04 08:31:23,436 | INFO     | -- intersect: -48975217198.91504
[2025-06-04 10:44:31] 2025-06-04 08:31:23,436 | INFO     | intersect: -48975217198.91504
[2025-06-04 10:44:31] 2025-06-04 08:31:23,437 | INFO     | chi2: 6.972508722656812
[2025-06-04 10:44:31] 2025-06-04 08:31:23,437 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,439 | INFO     | sum of deviations: 100681642713.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,439 | INFO     | mean x: 1749019004.5
[2025-06-04 10:44:31] 2025-06-04 08:31:23,439 | INFO     | mean y: 2425548.7075471696
[2025-06-04 10:44:31] 2025-06-04 08:31:23,439 | INFO     | -- intersect: -59600623586.243965
[2025-06-04 10:44:31] 2025-06-04 08:31:23,439 | INFO     | intersect: -59600623586.243965
[2025-06-04 10:44:31] 2025-06-04 08:31:23,440 | INFO     | chi2: 6.265013103334132
[2025-06-04 10:44:31] 2025-06-04 08:31:23,440 | INFO     | current chi2=6.265013103334132 (change=10.146930573549646 %)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,440 | INFO     | right removable region: 211
[2025-06-04 10:44:31] 2025-06-04 08:31:23,440 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,442 | INFO     | sum of deviations: 14735023634.500002
[2025-06-04 10:44:31] 2025-06-04 08:31:23,442 | INFO     | mean x: 1749019309.5
[2025-06-04 10:44:31] 2025-06-04 08:31:23,442 | INFO     | mean y: 2469892.6650943398
[2025-06-04 10:44:31] 2025-06-04 08:31:23,442 | INFO     | -- intersect: -8720594880.403654
[2025-06-04 10:44:31] 2025-06-04 08:31:23,443 | INFO     | intersect: -8720594880.403654
[2025-06-04 10:44:31] 2025-06-04 08:31:23,443 | INFO     | chi2: 2.173865565026091
[2025-06-04 10:44:31] 2025-06-04 08:31:23,443 | INFO     | current chi2=2.173865565026091 (change=68.82233280021256 %)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,443 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,445 | INFO     | sum of deviations: -20331885722.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,445 | INFO     | mean x: 1749019462.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,445 | INFO     | mean y: 2495905.188405797
[2025-06-04 10:44:31] 2025-06-04 08:31:23,446 | INFO     | -- intersect: 12932330742.23152
[2025-06-04 10:44:31] 2025-06-04 08:31:23,446 | INFO     | intersect: 12932330742.23152
[2025-06-04 10:44:31] 2025-06-04 08:31:23,446 | INFO     | chi2: 0.8965510605941084
[2025-06-04 10:44:31] 2025-06-04 08:31:23,446 | INFO     | current chi2=0.8965510605941084 (change=58.75775047831221 %)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,446 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 10:44:31] 2025-06-04 08:31:23,448 | INFO     | sum of deviations: -17826860301.5
[2025-06-04 10:44:31] 2025-06-04 08:31:23,448 | INFO     | mean x: 1749019614.5
[2025-06-04 10:44:31] 2025-06-04 08:31:23,448 | INFO     | mean y: 2493893.9455445544
[2025-06-04 10:44:31] 2025-06-04 08:31:23,448 | INFO     | -- intersect: 12202151791.3377
[2025-06-04 10:44:31] 2025-06-04 08:31:23,448 | INFO     | intersect: 12202151791.3377
[2025-06-04 10:44:31] 2025-06-04 08:31:23,449 | INFO     | chi2: 0.8762979264613211
[2025-06-04 10:44:31] 2025-06-04 08:31:23,449 | INFO     | current chi2=0.8762979264613211 (change=2.2590050944077125 %)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,449 | INFO     | left removable region: 30
[2025-06-04 10:44:31] 2025-06-04 08:31:23,449 | INFO     | sum of square deviations: 1838657730.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,451 | INFO     | sum of deviations: 6500024336.000001
[2025-06-04 10:44:31] 2025-06-04 08:31:23,451 | INFO     | mean x: 1749019889.0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,451 | INFO     | mean y: 2495187.9392265193
[2025-06-04 10:44:31] 2025-06-04 08:31:23,451 | INFO     | -- intersect: -6180641378.02078
[2025-06-04 10:44:31] 2025-06-04 08:31:23,451 | INFO     | intersect: -6180641378.02078
[2025-06-04 10:44:31] 2025-06-04 08:31:23,452 | INFO     | chi2: 0.0005597082289854772
[2025-06-04 10:44:31] 2025-06-04 08:31:23,452 | INFO     | -- intersect: -6180641378.02078
[2025-06-04 10:44:31] 2025-06-04 08:31:23,452 | INFO     | current memory leak: 3.54 B/s (using 181 data points, chi2=0.00)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,453 | INFO     | ..............................
[2025-06-04 10:44:31] 2025-06-04 08:31:23,453 | INFO     | . Timing measurements:
[2025-06-04 10:44:31] 2025-06-04 08:31:23,453 | INFO     | . get job = 0 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,453 | INFO     | . initial setup = 5 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,453 | INFO     | . payload setup = 170 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,454 | INFO     | . stage-in = 0 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,454 | INFO     | . payload execution = 13355 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,454 | INFO     | . stage-out = 3 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,454 | INFO     | . log creation = 0 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,454 | INFO     | ..............................
[2025-06-04 10:44:31] 2025-06-04 08:31:23,621 | INFO     | 
[2025-06-04 10:44:31] 2025-06-04 08:31:23,621 | INFO     | job summary report
[2025-06-04 10:44:31] 2025-06-04 08:31:23,621 | INFO     | --------------------------------------------------
[2025-06-04 10:44:31] 2025-06-04 08:31:23,622 | INFO     | PanDA job id: 6677920905
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | task id: 45006595
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | errors: (none)
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | pilot state: finished 
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | transexitcode: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | exeerrorcode: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | exeerrordiag: 
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | exitcode: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | exitmsg: OK
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | cpuconsumptiontime: 49999 s
[2025-06-04 10:44:31] 2025-06-04 08:31:23,623 | INFO     | nevents: 400
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | neventsw: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | pid: 14196
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | pgrp: 14196
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | corecount: 8
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | event service: False
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 95: 2405798, 98: 2406106, 1
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | --------------------------------------------------
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | 
[2025-06-04 10:44:31] 2025-06-04 08:31:23,624 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 10:44:31] 2025-06-04 08:31:24,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | job 6677920905 has completed (purged errors)
[2025-06-04 10:44:31] 2025-06-04 08:31:24,245 | INFO     | overall cleanup function is called
[2025-06-04 10:44:31] 2025-06-04 08:31:25,254 | INFO     | --- collectZombieJob: --- 10, [14196]
[2025-06-04 10:44:31] 2025-06-04 08:31:25,255 | INFO     | zombie collector waiting for pid 14196
[2025-06-04 10:44:31] 2025-06-04 08:31:25,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:44:31] 2025-06-04 08:31:25,255 | INFO     | collected zombie processes
[2025-06-04 10:44:31] 2025-06-04 08:31:25,255 | INFO     | will attempt to kill all subprocesses of pid=14196
[2025-06-04 10:44:31] 2025-06-04 08:31:25,363 | INFO     | process IDs to be killed: [14196] (in reverse order)
[2025-06-04 10:44:31] 2025-06-04 08:31:26,202 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:44:31] 2025-06-04 08:31:26,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:44:31] 2025-06-04 08:31:26,206 | INFO     | did not find any defunct processes belonging to 14196
[2025-06-04 10:44:31] 2025-06-04 08:31:26,209 | INFO     | did not find any defunct processes belonging to 14196
[2025-06-04 10:44:31] 2025-06-04 08:31:26,209 | INFO     | ready for new job
[2025-06-04 10:44:31] 2025-06-04 08:31:26,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:44:31] 2025-06-04 08:31:26,211 | INFO     | **************************************
[2025-06-04 10:44:31] 2025-06-04 08:31:26,212 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:44:31] 2025-06-04 08:31:26,212 | INFO     | **************************************
[2025-06-04 10:44:31] 2025-06-04 08:31:26,212 | INFO     | 
[2025-06-04 10:44:31] 2025-06-04 08:31:26,212 | INFO     | pilot is running in a VM
[2025-06-04 10:44:31] 2025-06-04 08:31:26,213 | INFO     | architecture information:
[2025-06-04 10:44:31] 2025-06-04 08:31:26,227 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:44:31] 2025-06-04 08:31:26,440 | INFO     | cat /etc/os-release:
[2025-06-04 10:44:31] NAME="CentOS Linux"
[2025-06-04 10:44:31] VERSION="7 (Core)"
[2025-06-04 10:44:31] ID="centos"
[2025-06-04 10:44:31] ID_LIKE="rhel fedora"
[2025-06-04 10:44:31] VERSION_ID="7"
[2025-06-04 10:44:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:44:31] ANSI_COLOR="0;31"
[2025-06-04 10:44:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:44:31] HOME_URL="https://www.centos.org/"
[2025-06-04 10:44:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:44:31] 
[2025-06-04 10:44:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:44:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:44:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:44:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:44:31] 
[2025-06-04 10:44:31] 2025-06-04 08:31:26,440 | INFO     | **************************************
[2025-06-04 10:44:31] 2025-06-04 08:31:26,944 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 10:44:31] 2025-06-04 08:31:27,130 | INFO     | sufficient remaining disk space (496716742656 B)
[2025-06-04 10:44:31] 2025-06-04 08:31:27,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:44:31] 2025-06-04 08:31:27,131 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:44:31] 2025-06-04 08:31:27,131 | INFO     | update_server=False
[2025-06-04 10:44:31] 2025-06-04 08:31:27,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:44:31] 2025-06-04 08:31:27,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:44:31] 2025-06-04 08:31:27,132 | INFO     | aborting loop
[2025-06-04 10:44:31] 2025-06-04 08:31:27,138 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:44:31] 2025-06-04 08:31:27,139 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:44:31] 2025-06-04 08:31:27,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:44:31] 2025-06-04 08:31:27,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:44:31] 2025-06-04 08:31:27,507 | INFO     | all payload control threads have been joined
[2025-06-04 10:44:31] 2025-06-04 08:31:27,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:44:31] 2025-06-04 08:31:28,095 | INFO     | all data control threads have been joined
[2025-06-04 10:44:31] 2025-06-04 08:31:28,137 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,138 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,370 | INFO     | [job] validate thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,422 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,493 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,513 | INFO     | [payload] control thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,635 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:44:31] 2025-06-04 08:31:28,653 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:28,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:44:31] 2025-06-04 08:31:28,821 | INFO     | all job control threads have been joined
[2025-06-04 10:44:31] 2025-06-04 08:31:29,101 | INFO     | [data] control thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,484 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,501 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,539 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,621 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,641 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:29,827 | INFO     | [job] control thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:32,680 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:37,460 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:44:31] 2025-06-04 08:31:38,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:44:31] 2025-06-04 08:31:39,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510943708992)>', '<ExcThread(monitor, started 140510492604160)>']
[2025-06-04 10:44:31] 2025-06-04 08:31:40,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:44:31] 2025-06-04 08:31:40,218 | INFO     | [monitor] control thread has ended
[2025-06-04 10:44:31] 2025-06-04 08:31:44,958 | INFO     | all workflow threads have been joined
[2025-06-04 10:44:31] 2025-06-04 08:31:44,959 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:44:31] 2025-06-04 08:31:44,959 | INFO     | traces error code: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:44,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:44:31] 2025-06-04 08:31:45,409 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:44:31] 2025-06-04 08:31:45,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:44:31] 2025-06-04 08:31:45,541 [wrapper] pilotpid: 5557
[2025-06-04 10:44:31] 2025-06-04 08:31:45,599 [wrapper] Pilot exit status: 0
[2025-06-04 10:44:31] 2025-06-04 08:31:46,082 [wrapper] pandaids: 6677920905
[2025-06-04 10:44:31] 2025-06-04 08:31:46,861 [wrapper] cleanup supervisor_pilot 25198 5558
[2025-06-04 10:44:31] 2025-06-04 08:31:46,944 [wrapper] Test setup, not cleaning
[2025-06-04 10:44:31] 2025-06-04 08:31:47,044 [wrapper] apfmon messages muted
[2025-06-04 10:44:31] 2025-06-04 08:31:47,115 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:44:31] 2025-06-04 08:31:47,203 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:44:31]  *** Error codes and diagnostics ***
[2025-06-04 10:44:31]     "exeErrorCode": 0,
[2025-06-04 10:44:31]     "exeErrorDiag": "",
[2025-06-04 10:44:31]     "pilotErrorCode": 0,
[2025-06-04 10:44:31]     "pilotErrorDiag": "",
[2025-06-04 10:44:31]  *** Listing of results directory ***
[2025-06-04 10:44:31] total 391564
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:32 queuedata.json
[2025-06-04 10:44:31] -rwx------. 1 boinc boinc     37140 Jun  3 20:33 runpilot2-wrapper.sh
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:44:31] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:07 run_atlas
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:07 job.xml
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc      6391 Jun  4 06:07 init_data.xml
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc 213131022 Jun  4 06:07 EVNT.45006593._001701.pool.root.1
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:07 start_atlas.sh
[2025-06-04 10:44:31] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:07 shared
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc    508882 Jun  4 06:07 input.tar.gz
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:07 boinc_lockfile
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:38 pandaJob.out
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc    986077 Jun  4 06:41 agis_schedconf.cvmfs.json
[2025-06-04 10:44:31] drwx------. 4 boinc boinc      4096 Jun  4 06:41 pilot3
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc 180874740 Jun  4 10:28 HITS.45006595._042415.pool.root.1
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:28 boinc_task_state.xml
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc      1029 Jun  4 10:29 memory_monitor_summary.json
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc   1603667 Jun  4 10:29 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc    387529 Jun  4 10:29 log.45006595._042415.job.log.tgz.1
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc        95 Jun  4 10:30 pilot_heartbeat.json
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc      7691 Jun  4 10:31 heartbeat.json
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc      4611 Jun  4 10:31 pilotlog.txt
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc   1176301 Jun  4 10:31 log.45006595._042415.job.log.1
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc       357 Jun  4 10:31 output.list
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:31 runtime_log
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc   1587200 Jun  4 10:31 result.tar.gz
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc       657 Jun  4 10:31 wLHLDmadlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNjlKDm4h2pmm.diag
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc      8659 Jun  4 10:31 runtime_log.err
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:44 boinc_mmap_file
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:44 wrapper_checkpoint.txt
[2025-06-04 10:44:31] -rw-r--r--. 1 boinc boinc     20492 Jun  4 10:44 stderr.txt
[2025-06-04 10:44:31] HITS file was successfully produced:
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc 180874740 Jun  4 10:28 shared/HITS.pool.root.1
[2025-06-04 10:44:31]  *** Contents of shared directory: ***
[2025-06-04 10:44:31] total 386840
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc 213131022 Jun  4 06:07 ATLAS.root_0
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:07 start_atlas.sh
[2025-06-04 10:44:31] -rw-r--r--. 2 boinc boinc    508882 Jun  4 06:07 input.tar.gz
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc 180874740 Jun  4 10:28 HITS.pool.root.1
[2025-06-04 10:44:31] -rw-------. 1 boinc boinc   1587200 Jun  4 10:31 result.tar.gz
10:44:32 (11886): run_atlas exited; CPU time 50193.989586
10:44:32 (11886): called boinc_finish(0)

</stderr_txt>
]]>

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