Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:40:59 (1039728): wrapper (7.7.26015): starting
15:40:59 (1039728): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:40:59] Arguments: --nthreads 8
[2025-06-03 15:40:59] Threads: 8
[2025-06-03 15:40:59] Checking for CVMFS
[2025-06-03 15:40:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:40:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:40:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:40:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:40:59] 2.12.6.0 5195 298 67788 146753 1 187 32879057 32935936 5398 16776704 0 1716546 99.996 148454 60494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 15:40:59] CVMFS is ok
[2025-06-03 15:40:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:40:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:40:59] Further information can be found at the LHC@home message board.
[2025-06-03 15:40:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:40:59] Checking for apptainer binary...
[2025-06-03 15:40:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:40:59] Running /usr/bin/apptainer --version
[2025-06-03 15:40:59] apptainer version 1.4.1-1.el9
[2025-06-03 15:41:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:41:00] c6-1-24-3.aglt2.org
[2025-06-03 15:41:00] apptainer works
[2025-06-03 15:41:00] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:41:00] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:41:00] Starting ATLAS job with PandaID=6677733564
[2025-06-03 15:41:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:58:35]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:58:35]  domain=
[2025-06-03 16:58:35]  filesize=311624
[2025-06-03 16:58:35]  filetype=log
[2025-06-03 16:58:35]  guid=288b0469-f43d-4399-8264-b07cdbc61e09
[2025-06-03 16:58:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 16:58:35]  is_altstaged=None
[2025-06-03 16:58:35]  is_tar=False
[2025-06-03 16:58:35]  lfn=log.45006595._037552.job.log.tgz.1
[2025-06-03 16:58:35]  mtime=0
[2025-06-03 16:58:35]  protocol_id=None
[2025-06-03 16:58:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 16:58:35]  replicas=None
[2025-06-03 16:58:35]  scope=mc23_13p6TeV
[2025-06-03 16:58:35]  status=None
[2025-06-03 16:58:35]  status_code=0
[2025-06-03 16:58:35]  storage_token=
[2025-06-03 16:58:35]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6677733564/log.45006595._037552.job.log.tgz.1
[2025-06-03 16:58:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/06/log.45006595._037552.job.log.tgz.1
[2025-06-03 16:58:35]  workdir=None
[2025-06-03 16:58:35] ]
[2025-06-03 16:58:35] 2025-06-03 20:58:13,214 | INFO     | transferring file log.45006595._037552.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6677733564/log.45006595._037552.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 16:58:35] 2025-06-03 20:58:13,214 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6677733564/log.45006595._037552.job.log.tgz.1 /tmp/boinchome/slots/6/log.45006595._037552.job
[2025-06-03 16:58:35] 2025-06-03 20:58:13,229 | INFO     | adding to output.list: log.45006595._037552.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/06/log.45006595._037552.job.log.tg
[2025-06-03 16:58:35] 2025-06-03 20:58:13,230 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 16:58:35] 2025-06-03 20:58:13,230 | INFO     | summary of transferred files:
[2025-06-03 16:58:35] 2025-06-03 20:58:13,230 | INFO     |  -- lfn=log.45006595._037552.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 16:58:35] 2025-06-03 20:58:13,230 | INFO     | stage-out finished correctly
[2025-06-03 16:58:35] 2025-06-03 20:58:13,700 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 16:58:35] 2025-06-03 20:58:14,696 | INFO     | monitor loop #344: job 0:6677733564 is in state 'finished'
[2025-06-03 16:58:35] 2025-06-03 20:58:14,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:58:35] 2025-06-03 20:58:16,107 | INFO     | job 6677733564 has state=finished
[2025-06-03 16:58:35] 2025-06-03 20:58:16,107 | INFO     | preparing for final server update for job 6677733564 in state='finished'
[2025-06-03 16:58:35] 2025-06-03 20:58:16,108 | INFO     | this job has now completed (state=finished)
[2025-06-03 16:58:35] 2025-06-03 20:58:16,108 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 16:58:35] 2025-06-03 20:58:16,108 | INFO     | log transfer has been attempted: DONE
[2025-06-03 16:58:35] 2025-06-03 20:58:16,108 | INFO     | job 6677733564 has finished - writing final server update
[2025-06-03 16:58:35] 2025-06-03 20:58:16,108 | INFO     | total number of processed events: 400 (read)
[2025-06-03 16:58:35] 2025-06-03 20:58:16,123 | INFO     | executing command: lscpu
[2025-06-03 16:58:35] 2025-06-03 20:58:16,195 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 16:58:35] 2025-06-03 20:58:17,199 | INFO     | monitor loop #345: job 0:6677733564 is in state 'finished'
[2025-06-03 16:58:35] 2025-06-03 20:58:17,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,170 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 16:58:35] 2025-06-03 20:58:19,170 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6677733564/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,171 | INFO     | extracted standard info from prmon json
[2025-06-03 16:58:35] 2025-06-03 20:58:19,171 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:58:35] 2025-06-03 20:58:19,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:58:35] 2025-06-03 20:58:19,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:58:35] 2025-06-03 20:58:19,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | sum of square deviations: 101843770.0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | sum of deviations: 9453805132.0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | mean x: 1748982070.0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | mean y: 2098834.797101449
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | -- intersect: -162349861124.48157
[2025-06-03 16:58:35] 2025-06-03 20:58:19,173 | INFO     | intersect: -162349861124.48157
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | chi2: 0.8777454616184563
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | -- intersect: -162349861124.48157
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | current memory leak: 92.83 B/s (using 69 data points, chi2=0.88)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | ..............................
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . Timing measurements:
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . get job = 0 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . initial setup = 2 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . payload setup = 4 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . stage-in = 0 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . payload execution = 4601 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . stage-out = 0 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | . log creation = 0 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,174 | INFO     | ..............................
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | 
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | job summary report
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | --------------------------------------------------
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | PanDA job id: 6677733564
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | task id: 45006595
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | errors: (none)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | pilot state: finished 
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | transexitcode: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | exeerrorcode: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | exeerrordiag: 
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | exitcode: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | exitmsg: OK
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | cpuconsumptiontime: 31497 s
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | nevents: 400
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | neventsw: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | pid: 1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | pgrp: 1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | corecount: 8
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | event service: False
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | sizes: {0: 2405013, 1: 2405212, 5: 2405418, 11: 2405474, 4609: 2431560, 4610: 2440501, 4611: 2440685, 4616: 2440855}
[2025-06-03 16:58:35] 2025-06-03 20:58:19,435 | INFO     | --------------------------------------------------
[2025-06-03 16:58:35] 2025-06-03 20:58:19,436 | INFO     | 
[2025-06-03 16:58:35] 2025-06-03 20:58:19,436 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,453 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:58:35] 2025-06-03 20:58:19,454 | INFO     | job 6677733564 has completed (purged errors)
[2025-06-03 16:58:35] 2025-06-03 20:58:19,455 | INFO     | overall cleanup function is called
[2025-06-03 16:58:35] 2025-06-03 20:58:20,462 | INFO     | --- collectZombieJob: --- 10, [1049934]
[2025-06-03 16:58:35] 2025-06-03 20:58:20,462 | INFO     | zombie collector waiting for pid 1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:20,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:58:35] 2025-06-03 20:58:20,462 | INFO     | collected zombie processes
[2025-06-03 16:58:35] 2025-06-03 20:58:20,463 | INFO     | will attempt to kill all subprocesses of pid=1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:20,679 | INFO     | process IDs to be killed: [1049934] (in reverse order)
[2025-06-03 16:58:35] 2025-06-03 20:58:20,749 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:58:35] 2025-06-03 20:58:20,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:58:35] 2025-06-03 20:58:20,757 | INFO     | did not find any defunct processes belonging to 1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:20,764 | INFO     | did not find any defunct processes belonging to 1049934
[2025-06-03 16:58:35] 2025-06-03 20:58:20,765 | INFO     | ready for new job
[2025-06-03 16:58:35] 2025-06-03 20:58:20,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:58:35] 2025-06-03 20:58:20,766 | INFO     | **************************************
[2025-06-03 16:58:35] 2025-06-03 20:58:20,766 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:58:35] 2025-06-03 20:58:20,766 | INFO     | **************************************
[2025-06-03 16:58:35] 2025-06-03 20:58:20,766 | INFO     | 
[2025-06-03 16:58:35] 2025-06-03 20:58:20,781 | INFO     | architecture information:
[2025-06-03 16:58:35] 2025-06-03 20:58:20,781 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:58:35] 2025-06-03 20:58:20,795 | INFO     | cat /etc/os-release:
[2025-06-03 16:58:35] NAME="CentOS Linux"
[2025-06-03 16:58:35] VERSION="7 (Core)"
[2025-06-03 16:58:35] ID="centos"
[2025-06-03 16:58:35] ID_LIKE="rhel fedora"
[2025-06-03 16:58:35] VERSION_ID="7"
[2025-06-03 16:58:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:58:35] ANSI_COLOR="0;31"
[2025-06-03 16:58:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:58:35] HOME_URL="https://www.centos.org/"
[2025-06-03 16:58:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:58:35] 
[2025-06-03 16:58:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:58:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:58:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:58:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:58:35] 
[2025-06-03 16:58:35] 2025-06-03 20:58:20,795 | INFO     | **************************************
[2025-06-03 16:58:35] 2025-06-03 20:58:21,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-06-03 16:58:35] 2025-06-03 20:58:21,313 | INFO     | sufficient remaining disk space (73246179328 B)
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | INFO     | update_server=False
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:58:35] 2025-06-03 20:58:21,314 | INFO     | aborting loop
[2025-06-03 16:58:35] 2025-06-03 20:58:21,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:58:35] 2025-06-03 20:58:21,340 | INFO     | all payload control threads have been joined
[2025-06-03 16:58:35] 2025-06-03 20:58:21,349 | INFO     | all data control threads have been joined
[2025-06-03 16:58:35] 2025-06-03 20:58:21,381 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:58:35] 2025-06-03 20:58:21,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:58:35] 2025-06-03 20:58:21,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:58:35] 2025-06-03 20:58:22,112 | INFO     | all job control threads have been joined
[2025-06-03 16:58:35] 2025-06-03 20:58:22,316 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,319 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,346 | INFO     | [payload] control thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,354 | INFO     | [data] control thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,367 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,368 | INFO     | [job] validate thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,544 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,713 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:22,938 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:23,118 | INFO     | [job] control thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:23,324 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:23,484 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:23,778 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:24,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:58:35] 2025-06-03 20:58:24,289 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:58:35] 2025-06-03 20:58:25,233 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:28,295 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:58:35] 2025-06-03 20:58:30,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875625203520)>', '<ExcThread(monitor, started 139875005232896)>']
[2025-06-03 16:58:35] 2025-06-03 20:58:30,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:58:35] 2025-06-03 20:58:30,427 | INFO     | [monitor] control thread has ended
[2025-06-03 16:58:35] 2025-06-03 20:58:35,312 | INFO     | all workflow threads have been joined
[2025-06-03 16:58:35] 2025-06-03 20:58:35,313 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:58:35] 2025-06-03 20:58:35,313 | INFO     | traces error code: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:35,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:58:35] 2025-06-03 20:58:35,438 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:58:35] 2025-06-03 20:58:35,441 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:58:35] 2025-06-03 20:58:35,443 [wrapper] pilotpid: 1043364
[2025-06-03 16:58:35] 2025-06-03 20:58:35,445 [wrapper] Pilot exit status: 0
[2025-06-03 16:58:35] 2025-06-03 20:58:35,455 [wrapper] pandaids: 6677733564
[2025-06-03 16:58:35] 2025-06-03 20:58:35,504 [wrapper] cleanup supervisor_pilot 1271439 1043365
[2025-06-03 16:58:35] 2025-06-03 20:58:35,507 [wrapper] Test setup, not cleaning
[2025-06-03 16:58:35] 2025-06-03 20:58:35,510 [wrapper] apfmon messages muted
[2025-06-03 16:58:35] 2025-06-03 20:58:35,512 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:58:35] 2025-06-03 20:58:35,515 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:58:35]  *** Error codes and diagnostics ***
[2025-06-03 16:58:35]     "exeErrorCode": 0,
[2025-06-03 16:58:35]     "exeErrorDiag": "",
[2025-06-03 16:58:35]     "pilotErrorCode": 0,
[2025-06-03 16:58:35]     "pilotErrorDiag": "",
[2025-06-03 16:58:35]  *** Listing of results directory ***
[2025-06-03 16:58:35] total 393204
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 11:35 pilot3.tar.gz
[2025-06-03 16:58:35] -rwx------. 1 boincer umatlas     37140 Jun  3 11:46 runpilot2-wrapper.sh
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 11:46 queuedata.json
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas       100 Jun  3 15:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:58:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 15:40 run_atlas
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas       105 Jun  3 15:40 job.xml
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas 212587044 Jun  3 15:40 EVNT.45006593._001507.pool.root.1
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas    508881 Jun  3 15:40 input.tar.gz
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:40 start_atlas.sh
[2025-06-03 16:58:35] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 15:40 shared
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas         0 Jun  3 15:40 boinc_lockfile
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 15:41 pandaJob.out
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas    986893 Jun  3 15:41 agis_schedconf.cvmfs.json
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas   1603667 Jun  3 15:41 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:58:35] drwx------. 4 boincer umatlas      4096 Jun  3 15:41 pilot3
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas        95 Jun  3 16:57 pilot_heartbeat.json
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas      6840 Jun  3 16:57 init_data.xml
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas 184674968 Jun  3 16:57 HITS.45006595._037552.pool.root.1
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas       529 Jun  3 16:57 boinc_task_state.xml
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas      1034 Jun  3 16:58 memory_monitor_summary.json
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas    311624 Jun  3 16:58 log.45006595._037552.job.log.tgz.1
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas      7711 Jun  3 16:58 heartbeat.json
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas      4353 Jun  3 16:58 pilotlog.txt
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas    457178 Jun  3 16:58 log.45006595._037552.job.log.1
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 16:58 boinc_mmap_file
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas       357 Jun  3 16:58 output.list
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas       620 Jun  3 16:58 runtime_log
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas    788480 Jun  3 16:58 result.tar.gz
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas        27 Jun  3 16:58 wrapper_checkpoint.txt
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas      8664 Jun  3 16:58 runtime_log.err
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas       652 Jun  3 16:58 2DALDm70ig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8tkKDmR4SeMo.diag
[2025-06-03 16:58:35] -rw-r--r--. 1 boincer umatlas     21041 Jun  3 16:58 stderr.txt
[2025-06-03 16:58:35] HITS file was successfully produced:
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas 184674968 Jun  3 16:57 shared/HITS.pool.root.1
[2025-06-03 16:58:35]  *** Contents of shared directory: ***
[2025-06-03 16:58:35] total 389252
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas 212587044 Jun  3 15:40 ATLAS.root_0
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas    508881 Jun  3 15:40 input.tar.gz
[2025-06-03 16:58:35] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:40 start_atlas.sh
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas 184674968 Jun  3 16:57 HITS.pool.root.1
[2025-06-03 16:58:35] -rw-------. 1 boincer umatlas    788480 Jun  3 16:58 result.tar.gz
16:58:37 (1039728): run_atlas exited; CPU time 31576.589066
16:58:37 (1039728): called boinc_finish(0)

</stderr_txt>
]]>

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