Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:04:05 (19448): wrapper (7.7.26015): starting
06:04:05 (19448): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:04:05] Arguments: --nthreads 8
[2025-06-04 06:04:05] Threads: 8
[2025-06-04 06:04:05] Checking for CVMFS
[2025-06-04 06:04:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:04:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:04:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:04:07] 2.11.2.0 7869 32716 89124 146767 0 114 14364096 25165824 3621 130560 0 16473484 99.762 20022613 2012 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:04:07] CVMFS is ok
[2025-06-04 06:04:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:04:07] Checking for apptainer binary...
[2025-06-04 06:04:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:04:07] Running /usr/bin/apptainer --version
[2025-06-04 06:04:07] apptainer version 1.3.2-1.el7
[2025-06-04 06:04:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:04:09] cg-vwn276.simple-grid.lan
[2025-06-04 06:04:09] apptainer works
[2025-06-04 06:04:09] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:04:09] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:04:09] Starting ATLAS job with PandaID=6677783105
[2025-06-04 06:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:43:23]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:43:23] 2025-06-04 07:38:29,354 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6677783105/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,355 | INFO     | extracted standard info from prmon json
[2025-06-04 09:43:23] 2025-06-04 07:38:29,355 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:43:23] 2025-06-04 07:38:29,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:43:23] 2025-06-04 07:38:29,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:43:23] 2025-06-04 07:38:29,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:43:23] 2025-06-04 07:38:29,361 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:43:23] 2025-06-04 07:38:29,362 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,363 | INFO     | sum of deviations: -38985213826.00001
[2025-06-04 09:43:23] 2025-06-04 07:38:29,363 | INFO     | mean x: 1749016271.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,364 | INFO     | mean y: 2489929.7942583733
[2025-06-04 09:43:23] 2025-06-04 07:38:29,364 | INFO     | -- intersect: 24089696133.00567
[2025-06-04 09:43:23] 2025-06-04 07:38:29,364 | INFO     | intersect: 24089696133.00567
[2025-06-04 09:43:23] 2025-06-04 07:38:29,364 | INFO     | chi2: 3.6670663696839227
[2025-06-04 09:43:23] 2025-06-04 07:38:29,365 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,366 | INFO     | sum of deviations: -9812261811.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,366 | INFO     | mean x: 1749016118.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,366 | INFO     | mean y: 2512046.5196078434
[2025-06-04 09:43:23] 2025-06-04 07:38:29,366 | INFO     | -- intersect: 6521864323.424922
[2025-06-04 09:43:23] 2025-06-04 07:38:29,367 | INFO     | intersect: 6521864323.424922
[2025-06-04 09:43:23] 2025-06-04 07:38:29,367 | INFO     | chi2: 2.0162450681402744
[2025-06-04 09:43:23] 2025-06-04 07:38:29,367 | INFO     | current chi2=2.0162450681402744 (change=45.017491780110284 %)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,367 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,369 | INFO     | sum of deviations: -9357505896.000006
[2025-06-04 09:43:23] 2025-06-04 07:38:29,369 | INFO     | mean x: 1749015966.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,369 | INFO     | mean y: 2512413.8040201003
[2025-06-04 09:43:23] 2025-06-04 07:38:29,369 | INFO     | -- intersect: 6700235641.869761
[2025-06-04 09:43:23] 2025-06-04 07:38:29,369 | INFO     | intersect: 6700235641.869761
[2025-06-04 09:43:23] 2025-06-04 07:38:29,370 | INFO     | chi2: 2.0155809723367595
[2025-06-04 09:43:23] 2025-06-04 07:38:29,370 | INFO     | current chi2=2.0155809723367595 (change=0.03293725619016341 %)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,370 | INFO     | right removable region: 198
[2025-06-04 09:43:23] 2025-06-04 07:38:29,370 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,372 | INFO     | sum of deviations: -77145856644.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,372 | INFO     | mean x: 1749016423.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,372 | INFO     | mean y: 2519017.8774509802
[2025-06-04 09:43:23] 2025-06-04 07:38:29,372 | INFO     | -- intersect: 51258907561.24624
[2025-06-04 09:43:23] 2025-06-04 07:38:29,372 | INFO     | intersect: 51258907561.24624
[2025-06-04 09:43:23] 2025-06-04 07:38:29,373 | INFO     | chi2: 1.9249610483018562
[2025-06-04 09:43:23] 2025-06-04 07:38:29,373 | INFO     | current chi2=1.9249610483018562 (change=47.506784599925986 %)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,373 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,375 | INFO     | sum of deviations: -73527505706.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,375 | INFO     | mean x: 1749016576.0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,375 | INFO     | mean y: 2516064.32160804
[2025-06-04 09:43:23] 2025-06-04 07:38:29,375 | INFO     | -- intersect: 52630541106.313705
[2025-06-04 09:43:23] 2025-06-04 07:38:29,375 | INFO     | intersect: 52630541106.313705
[2025-06-04 09:43:23] 2025-06-04 07:38:29,376 | INFO     | chi2: 1.9173964275130781
[2025-06-04 09:43:23] 2025-06-04 07:38:29,376 | INFO     | current chi2=1.9173964275130781 (change=0.3929752654190769 %)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,376 | INFO     | left removable region: 20
[2025-06-04 09:43:23] 2025-06-04 07:38:29,376 | INFO     | sum of square deviations: 1748737904.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,378 | INFO     | sum of deviations: -32282243801.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,378 | INFO     | mean x: 1749016545.5
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | mean y: 2530418.691011236
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | -- intersect: 32289918019.425842
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | intersect: 32289918019.425842
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | chi2: 0.18537441943533958
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | -- intersect: 32289918019.425842
[2025-06-04 09:43:23] 2025-06-04 07:38:29,379 | INFO     | current memory leak: -18.46 B/s (using 178 data points, chi2=0.19)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,380 | INFO     | ..............................
[2025-06-04 09:43:23] 2025-06-04 07:38:29,380 | INFO     | . Timing measurements:
[2025-06-04 09:43:23] 2025-06-04 07:38:29,380 | INFO     | . get job = 0 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . initial setup = 2 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . payload setup = 13 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . stage-in = 0 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . payload execution = 12713 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . stage-out = 4 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | . log creation = 1 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,381 | INFO     | ..............................
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | 
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | job summary report
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | --------------------------------------------------
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | PanDA job id: 6677783105
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | task id: 45006595
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | errors: (none)
[2025-06-04 09:43:23] 2025-06-04 07:38:29,910 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | pilot state: finished 
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | transexitcode: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | exeerrorcode: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | exeerrordiag: 
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | exitcode: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | exitmsg: OK
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | cpuconsumptiontime: 48944 s
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | nevents: 400
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | neventsw: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | pid: 31734
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | pgrp: 31734
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | corecount: 8
[2025-06-04 09:43:23] 2025-06-04 07:38:29,911 | INFO     | event service: False
[2025-06-04 09:43:23] 2025-06-04 07:38:29,912 | INFO     | sizes: {0: 2405013, 1: 2405212, 10: 2405418, 12: 2405446, 12731: 2434701, 12735: 2443642, 12738: 2443826, 12817: 2443996}
[2025-06-04 09:43:23] 2025-06-04 07:38:29,912 | INFO     | --------------------------------------------------
[2025-06-04 09:43:23] 2025-06-04 07:38:29,912 | INFO     | 
[2025-06-04 09:43:23] 2025-06-04 07:38:29,912 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | job 6677783105 has completed (purged errors)
[2025-06-04 09:43:23] 2025-06-04 07:38:30,173 | INFO     | overall cleanup function is called
[2025-06-04 09:43:23] 2025-06-04 07:38:31,183 | INFO     | --- collectZombieJob: --- 10, [31734]
[2025-06-04 09:43:23] 2025-06-04 07:38:31,183 | INFO     | zombie collector waiting for pid 31734
[2025-06-04 09:43:23] 2025-06-04 07:38:31,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:43:23] 2025-06-04 07:38:31,183 | INFO     | collected zombie processes
[2025-06-04 09:43:23] 2025-06-04 07:38:31,183 | INFO     | will attempt to kill all subprocesses of pid=31734
[2025-06-04 09:43:23] 2025-06-04 07:38:31,276 | INFO     | process IDs to be killed: [31734] (in reverse order)
[2025-06-04 09:43:23] 2025-06-04 07:38:32,099 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:43:23] 2025-06-04 07:38:32,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:43:23] 2025-06-04 07:38:32,103 | INFO     | did not find any defunct processes belonging to 31734
[2025-06-04 09:43:23] 2025-06-04 07:38:32,106 | INFO     | did not find any defunct processes belonging to 31734
[2025-06-04 09:43:23] 2025-06-04 07:38:32,106 | INFO     | ready for new job
[2025-06-04 09:43:23] 2025-06-04 07:38:32,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:43:23] 2025-06-04 07:38:32,109 | INFO     | **************************************
[2025-06-04 09:43:23] 2025-06-04 07:38:32,109 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:43:23] 2025-06-04 07:38:32,109 | INFO     | **************************************
[2025-06-04 09:43:23] 2025-06-04 07:38:32,109 | INFO     | 
[2025-06-04 09:43:23] 2025-06-04 07:38:32,110 | INFO     | pilot is running in a VM
[2025-06-04 09:43:23] 2025-06-04 07:38:32,110 | INFO     | architecture information:
[2025-06-04 09:43:23] 2025-06-04 07:38:32,122 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:43:23] 2025-06-04 07:38:32,435 | INFO     | cat /etc/os-release:
[2025-06-04 09:43:23] NAME="CentOS Linux"
[2025-06-04 09:43:23] VERSION="7 (Core)"
[2025-06-04 09:43:23] ID="centos"
[2025-06-04 09:43:23] ID_LIKE="rhel fedora"
[2025-06-04 09:43:23] VERSION_ID="7"
[2025-06-04 09:43:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:43:23] ANSI_COLOR="0;31"
[2025-06-04 09:43:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:43:23] HOME_URL="https://www.centos.org/"
[2025-06-04 09:43:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:43:23] 
[2025-06-04 09:43:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:43:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:43:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:43:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:43:23] 
[2025-06-04 09:43:23] 2025-06-04 07:38:32,436 | INFO     | **************************************
[2025-06-04 09:43:23] 2025-06-04 07:38:32,939 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 09:43:23] 2025-06-04 07:38:33,212 | INFO     | sufficient remaining disk space (497123590144 B)
[2025-06-04 09:43:23] 2025-06-04 07:38:33,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:43:23] 2025-06-04 07:38:33,212 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:43:23] 2025-06-04 07:38:33,212 | INFO     | update_server=False
[2025-06-04 09:43:23] 2025-06-04 07:38:33,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:43:23] 2025-06-04 07:38:33,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:43:23] 2025-06-04 07:38:33,214 | INFO     | aborting loop
[2025-06-04 09:43:23] 2025-06-04 07:38:33,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:43:23] 2025-06-04 07:38:33,433 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:43:23] 2025-06-04 07:38:33,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:43:23] 2025-06-04 07:38:33,433 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:43:23] 2025-06-04 07:38:33,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:43:23] 2025-06-04 07:38:33,681 | INFO     | all payload control threads have been joined
[2025-06-04 09:43:23] 2025-06-04 07:38:33,751 | INFO     | all job control threads have been joined
[2025-06-04 09:43:23] 2025-06-04 07:38:33,872 | INFO     | all data control threads have been joined
[2025-06-04 09:43:23] 2025-06-04 07:38:34,219 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,220 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,522 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:43:23] 2025-06-04 07:38:34,583 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,687 | INFO     | [payload] control thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,688 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,757 | INFO     | [job] control thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,861 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,861 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,870 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:34,878 | INFO     | [data] control thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:35,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:35,380 | INFO     | [job] validate thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:35,459 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:35,528 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:35,672 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:37,324 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:43:23] 2025-06-04 07:38:38,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844100540224)>', '<ExcThread(monitor, started 139843480819456)>']
[2025-06-04 09:43:23] 2025-06-04 07:38:39,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:43:23] 2025-06-04 07:38:39,469 | INFO     | [monitor] control thread has ended
[2025-06-04 09:43:23] 2025-06-04 07:38:43,798 | INFO     | all workflow threads have been joined
[2025-06-04 09:43:23] 2025-06-04 07:38:43,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:43:23] 2025-06-04 07:38:43,798 | INFO     | traces error code: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:43,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:43:23] 2025-06-04 07:38:44,189 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:43:23] 2025-06-04 07:38:44,302 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:43:23] 2025-06-04 07:38:44,447 [wrapper] pilotpid: 23191
[2025-06-04 09:43:23] 2025-06-04 07:38:44,551 [wrapper] Pilot exit status: 0
[2025-06-04 09:43:23] 2025-06-04 07:38:45,058 [wrapper] pandaids: 6677783105
[2025-06-04 09:43:23] 2025-06-04 07:38:46,104 [wrapper] cleanup supervisor_pilot 13558 23192
[2025-06-04 09:43:23] 2025-06-04 07:38:46,159 [wrapper] Test setup, not cleaning
[2025-06-04 09:43:23] 2025-06-04 07:38:46,260 [wrapper] apfmon messages muted
[2025-06-04 09:43:23] 2025-06-04 07:38:46,382 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:43:23] 2025-06-04 07:38:46,496 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:43:23]  *** Error codes and diagnostics ***
[2025-06-04 09:43:23]     "exeErrorCode": 0,
[2025-06-04 09:43:23]     "exeErrorDiag": "",
[2025-06-04 09:43:23]     "pilotErrorCode": 0,
[2025-06-04 09:43:23]     "pilotErrorDiag": "",
[2025-06-04 09:43:23]  *** Listing of results directory ***
[2025-06-04 09:43:23] total 392960
[2025-06-04 09:43:23] -rwx------. 1 boinc boinc     37140 Jun  3 18:42 runpilot2-wrapper.sh
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:42 queuedata.json
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:43:23] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:04 run_atlas
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:04 job.xml
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc 216968742 Jun  4 06:04 EVNT.45006593._001567.pool.root.1
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:04 start_atlas.sh
[2025-06-04 09:43:23] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:04 shared
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc    508874 Jun  4 06:04 input.tar.gz
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc      6390 Jun  4 06:04 init_data.xml
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:04 boinc_lockfile
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:04 pandaJob.out
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc    986077 Jun  4 06:04 agis_schedconf.cvmfs.json
[2025-06-04 09:43:23] drwx------. 4 boinc boinc      4096 Jun  4 06:04 pilot3
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc 178630525 Jun  4 09:35 HITS.45006595._039069.pool.root.1
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc       530 Jun  4 09:35 boinc_task_state.xml
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc      1017 Jun  4 09:36 memory_monitor_summary.json
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc   1603667 Jun  4 09:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc    374235 Jun  4 09:37 log.45006595._039069.job.log.tgz.1
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc        95 Jun  4 09:37 pilot_heartbeat.json
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc      7690 Jun  4 09:38 heartbeat.json
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc      4416 Jun  4 09:38 pilotlog.txt
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc   1113074 Jun  4 09:38 log.45006595._039069.job.log.1
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc       357 Jun  4 09:38 output.list
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc       620 Jun  4 09:38 runtime_log
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc   1505280 Jun  4 09:38 result.tar.gz
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc      8659 Jun  4 09:38 runtime_log.err
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc       657 Jun  4 09:38 6LSNDmUtjg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUIZKDmcMCCYn.diag
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc      8192 Jun  4 09:43 boinc_mmap_file
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc        28 Jun  4 09:43 wrapper_checkpoint.txt
[2025-06-04 09:43:23] -rw-r--r--. 1 boinc boinc     20481 Jun  4 09:43 stderr.txt
[2025-06-04 09:43:23] HITS file was successfully produced:
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc 178630525 Jun  4 09:35 shared/HITS.pool.root.1
[2025-06-04 09:43:23]  *** Contents of shared directory: ***
[2025-06-04 09:43:23] total 388316
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc 216968742 Jun  4 06:04 ATLAS.root_0
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:04 start_atlas.sh
[2025-06-04 09:43:23] -rw-r--r--. 2 boinc boinc    508874 Jun  4 06:04 input.tar.gz
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc 178630525 Jun  4 09:35 HITS.pool.root.1
[2025-06-04 09:43:23] -rw-------. 1 boinc boinc   1505280 Jun  4 09:38 result.tar.gz
09:43:25 (19448): run_atlas exited; CPU time 49107.717993
09:43:25 (19448): called boinc_finish(0)

</stderr_txt>
]]>

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