Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:09:30 (12675): wrapper (7.7.26015): starting
06:09:30 (12675): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:09:30] Arguments: --nthreads 8
[2025-06-04 06:09:30] Threads: 8
[2025-06-04 06:09:30] Checking for CVMFS
[2025-06-04 06:09:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:09:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:09:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:09:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:09:32] 2.11.2.0 15047 32718 93072 146767 2 59 14588489 25165824 4290 130560 0 17907289 99.818 19363888 2077 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:09:32] CVMFS is ok
[2025-06-04 06:09:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:09:32] Checking for apptainer binary...
[2025-06-04 06:09:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:09:32] Running /usr/bin/apptainer --version
[2025-06-04 06:09:32] apptainer version 1.3.2-1.el7
[2025-06-04 06:09:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:26:42] cg-vwn358.simple-grid.lan
[2025-06-04 06:26:42] apptainer works
[2025-06-04 06:26:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:26:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:26:42] Starting ATLAS job with PandaID=6677784153
[2025-06-04 06:26:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:32:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:32:38] 2025-06-04 08:06:44,982 | INFO     | extracted standard info from prmon json
[2025-06-04 10:32:38] 2025-06-04 08:06:44,982 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:32:38] 2025-06-04 08:06:44,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:32:38] 2025-06-04 08:06:44,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:32:38] 2025-06-04 08:06:44,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:32:38] 2025-06-04 08:06:44,987 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:32:38] 2025-06-04 08:06:44,988 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 10:32:38] 2025-06-04 08:06:44,990 | INFO     | sum of deviations: 6813622438.49999
[2025-06-04 10:32:38] 2025-06-04 08:06:44,990 | INFO     | mean x: 1749017829.5
[2025-06-04 10:32:38] 2025-06-04 08:06:44,990 | INFO     | mean y: 2476217.070754717
[2025-06-04 10:32:38] 2025-06-04 08:06:44,991 | INFO     | -- intersect: -4031152845.9550004
[2025-06-04 10:32:38] 2025-06-04 08:06:44,991 | INFO     | intersect: -4031152845.9550004
[2025-06-04 10:32:38] 2025-06-04 08:06:44,991 | INFO     | chi2: 2.610846561682121
[2025-06-04 10:32:38] 2025-06-04 08:06:44,992 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 10:32:38] 2025-06-04 08:06:44,993 | INFO     | sum of deviations: 20519985078.00003
[2025-06-04 10:32:38] 2025-06-04 08:06:44,993 | INFO     | mean x: 1749017677.0
[2025-06-04 10:32:38] 2025-06-04 08:06:44,994 | INFO     | mean y: 2486256.3381642513
[2025-06-04 10:32:38] 2025-06-04 08:06:44,994 | INFO     | -- intersect: -13046954939.95504
[2025-06-04 10:32:38] 2025-06-04 08:06:44,994 | INFO     | intersect: -13046954939.95504
[2025-06-04 10:32:38] 2025-06-04 08:06:44,994 | INFO     | chi2: 1.849558744025175
[2025-06-04 10:32:38] 2025-06-04 08:06:44,994 | INFO     | current chi2=1.849558744025175 (change=29.158657916934878 %)
[2025-06-04 10:32:38] 2025-06-04 08:06:44,995 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 10:32:38] 2025-06-04 08:06:44,996 | INFO     | sum of deviations: 20028163641.5
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | mean x: 1749017524.5
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | mean y: 2485870.698019802
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | -- intersect: -13703598579.140673
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | intersect: -13703598579.140673
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | chi2: 1.8509456078034776
[2025-06-04 10:32:38] 2025-06-04 08:06:44,997 | INFO     | current chi2=1.8509456078034776 (change=-0.0749834944568634 %)
[2025-06-04 10:32:38] 2025-06-04 08:06:44,998 | INFO     | right removable region: 201
[2025-06-04 10:32:38] 2025-06-04 08:06:44,998 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,000 | INFO     | sum of deviations: -31242532321.0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,000 | INFO     | mean x: 1749017982.0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,000 | INFO     | mean y: 2504399.15942029
[2025-06-04 10:32:38] 2025-06-04 08:06:45,000 | INFO     | -- intersect: 19870825837.611885
[2025-06-04 10:32:38] 2025-06-04 08:06:45,000 | INFO     | intersect: 19870825837.611885
[2025-06-04 10:32:38] 2025-06-04 08:06:45,001 | INFO     | chi2: 0.9105776036827037
[2025-06-04 10:32:38] 2025-06-04 08:06:45,001 | INFO     | current chi2=0.9105776036827037 (change=65.12328158051405 %)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,001 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 10:32:38] 2025-06-04 08:06:45,003 | INFO     | sum of deviations: -26812647386.499996
[2025-06-04 10:32:38] 2025-06-04 08:06:45,003 | INFO     | mean x: 1749018134.5
[2025-06-04 10:32:38] 2025-06-04 08:06:45,003 | INFO     | mean y: 2500894.3217821782
[2025-06-04 10:32:38] 2025-06-04 08:06:45,003 | INFO     | -- intersect: 18351489056.78806
[2025-06-04 10:32:38] 2025-06-04 08:06:45,003 | INFO     | intersect: 18351489056.78806
[2025-06-04 10:32:38] 2025-06-04 08:06:45,004 | INFO     | chi2: 0.893980967331077
[2025-06-04 10:32:38] 2025-06-04 08:06:45,004 | INFO     | current chi2=0.893980967331077 (change=1.8226493035304072 %)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,004 | INFO     | left removable region: 20
[2025-06-04 10:32:38] 2025-06-04 08:06:45,005 | INFO     | sum of square deviations: 1838657730.0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,006 | INFO     | sum of deviations: 1237350656.9999998
[2025-06-04 10:32:38] 2025-06-04 08:06:45,006 | INFO     | mean x: 1749018104.0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,006 | INFO     | mean y: 2499240.5966850827
[2025-06-04 10:32:38] 2025-06-04 08:06:45,006 | INFO     | -- intersect: -1174527165.5573814
[2025-06-04 10:32:38] 2025-06-04 08:06:45,006 | INFO     | intersect: -1174527165.5573814
[2025-06-04 10:32:38] 2025-06-04 08:06:45,007 | INFO     | chi2: 0.025652122941298188
[2025-06-04 10:32:38] 2025-06-04 08:06:45,007 | INFO     | -- intersect: -1174527165.5573814
[2025-06-04 10:32:38] 2025-06-04 08:06:45,007 | INFO     | current memory leak: 0.67 B/s (using 181 data points, chi2=0.03)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,008 | INFO     | ..............................
[2025-06-04 10:32:38] 2025-06-04 08:06:45,008 | INFO     | . Timing measurements:
[2025-06-04 10:32:38] 2025-06-04 08:06:45,008 | INFO     | . get job = 0 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,008 | INFO     | . initial setup = 2 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | . payload setup = 27 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | . stage-in = 0 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | . payload execution = 12963 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | . stage-out = 4 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | . log creation = 1 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,009 | INFO     | ..............................
[2025-06-04 10:32:38] 2025-06-04 08:06:45,145 | INFO     | 
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | job summary report
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | --------------------------------------------------
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | PanDA job id: 6677784153
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | task id: 45006595
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | errors: (none)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:32:38] 2025-06-04 08:06:45,146 | INFO     | pilot state: finished 
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | transexitcode: 0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | exeerrorcode: 0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | exeerrordiag: 
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | exitcode: 0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | exitmsg: OK
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | cpuconsumptiontime: 49855 s
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | nevents: 400
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | neventsw: 0
[2025-06-04 10:32:38] 2025-06-04 08:06:45,147 | INFO     | pid: 4705
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | pgrp: 4705
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | corecount: 8
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | event service: False
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | sizes: {0: 2404957, 1: 2405212, 2: 2405212, 12: 2405240, 14: 2405474, 23: 2405502, 12995: 2434976, 13001: 2443917, 13003: 2443973, 13098: 2444143}
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | --------------------------------------------------
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | 
[2025-06-04 10:32:38] 2025-06-04 08:06:45,148 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 10:32:38] 2025-06-04 08:06:45,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,461 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,462 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,463 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:32:38] 2025-06-04 08:06:45,464 | INFO     | job 6677784153 has completed (purged errors)
[2025-06-04 10:32:38] 2025-06-04 08:06:45,464 | INFO     | overall cleanup function is called
[2025-06-04 10:32:38] 2025-06-04 08:06:46,473 | INFO     | --- collectZombieJob: --- 10, [4705]
[2025-06-04 10:32:38] 2025-06-04 08:06:46,474 | INFO     | zombie collector waiting for pid 4705
[2025-06-04 10:32:38] 2025-06-04 08:06:46,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:32:38] 2025-06-04 08:06:46,474 | INFO     | collected zombie processes
[2025-06-04 10:32:38] 2025-06-04 08:06:46,474 | INFO     | will attempt to kill all subprocesses of pid=4705
[2025-06-04 10:32:38] 2025-06-04 08:06:46,609 | INFO     | process IDs to be killed: [4705] (in reverse order)
[2025-06-04 10:32:38] 2025-06-04 08:06:47,297 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:32:38] 2025-06-04 08:06:47,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:32:38] 2025-06-04 08:06:47,301 | INFO     | did not find any defunct processes belonging to 4705
[2025-06-04 10:32:38] 2025-06-04 08:06:47,305 | INFO     | did not find any defunct processes belonging to 4705
[2025-06-04 10:32:38] 2025-06-04 08:06:47,305 | INFO     | ready for new job
[2025-06-04 10:32:38] 2025-06-04 08:06:47,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:32:38] 2025-06-04 08:06:47,308 | INFO     | **************************************
[2025-06-04 10:32:38] 2025-06-04 08:06:47,308 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:32:38] 2025-06-04 08:06:47,308 | INFO     | **************************************
[2025-06-04 10:32:38] 2025-06-04 08:06:47,308 | INFO     | 
[2025-06-04 10:32:38] 2025-06-04 08:06:47,309 | INFO     | pilot is running in a VM
[2025-06-04 10:32:38] 2025-06-04 08:06:47,309 | INFO     | architecture information:
[2025-06-04 10:32:38] 2025-06-04 08:06:47,314 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:32:38] 2025-06-04 08:06:47,579 | INFO     | cat /etc/os-release:
[2025-06-04 10:32:38] NAME="CentOS Linux"
[2025-06-04 10:32:38] VERSION="7 (Core)"
[2025-06-04 10:32:38] ID="centos"
[2025-06-04 10:32:38] ID_LIKE="rhel fedora"
[2025-06-04 10:32:38] VERSION_ID="7"
[2025-06-04 10:32:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:32:38] ANSI_COLOR="0;31"
[2025-06-04 10:32:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:32:38] HOME_URL="https://www.centos.org/"
[2025-06-04 10:32:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:32:38] 
[2025-06-04 10:32:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:32:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:32:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:32:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:32:38] 
[2025-06-04 10:32:38] 2025-06-04 08:06:47,579 | INFO     | **************************************
[2025-06-04 10:32:38] 2025-06-04 08:06:48,083 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 10:32:38] 2025-06-04 08:06:48,323 | INFO     | sufficient remaining disk space (496447258624 B)
[2025-06-04 10:32:38] 2025-06-04 08:06:48,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:32:38] 2025-06-04 08:06:48,324 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:32:38] 2025-06-04 08:06:48,324 | INFO     | update_server=False
[2025-06-04 10:32:38] 2025-06-04 08:06:48,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:32:38] 2025-06-04 08:06:48,327 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:32:38] 2025-06-04 08:06:48,328 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:32:38] 2025-06-04 08:06:48,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:32:38] 2025-06-04 08:06:48,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:32:38] 2025-06-04 08:06:48,766 | INFO     | all job control threads have been joined
[2025-06-04 10:32:38] 2025-06-04 08:06:49,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:32:38] 2025-06-04 08:06:49,055 | INFO     | aborting loop
[2025-06-04 10:32:38] 2025-06-04 08:06:49,056 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:32:38] 2025-06-04 08:06:49,325 | INFO     | all data control threads have been joined
[2025-06-04 10:32:38] 2025-06-04 08:06:49,333 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:49,388 | INFO     | [job] validate thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:49,434 | INFO     | all payload control threads have been joined
[2025-06-04 10:32:38] 2025-06-04 08:06:49,773 | INFO     | [job] control thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:49,807 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:49,823 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,061 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,138 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:32:38] 2025-06-04 08:06:50,281 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,332 | INFO     | [data] control thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,337 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,412 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,440 | INFO     | [payload] control thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:50,796 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:51,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:32:38] 2025-06-04 08:06:51,063 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:51,168 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:55,045 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:32:38] 2025-06-04 08:06:56,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455041181504)>', '<ExcThread(monitor, started 140454574135040)>']
[2025-06-04 10:32:38] 2025-06-04 08:06:56,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:32:38] 2025-06-04 08:06:56,376 | INFO     | [monitor] control thread has ended
[2025-06-04 10:32:38] 2025-06-04 08:07:01,130 | INFO     | all workflow threads have been joined
[2025-06-04 10:32:38] 2025-06-04 08:07:01,131 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:32:38] 2025-06-04 08:07:01,131 | INFO     | traces error code: 0
[2025-06-04 10:32:38] 2025-06-04 08:07:01,131 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:32:38] 2025-06-04 08:07:01,479 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:32:38] 2025-06-04 08:07:01,537 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:32:38] 2025-06-04 08:07:01,652 [wrapper] pilotpid: 26270
[2025-06-04 10:32:38] 2025-06-04 08:07:01,730 [wrapper] Pilot exit status: 0
[2025-06-04 10:32:38] 2025-06-04 08:07:02,161 [wrapper] pandaids: 6677784153
[2025-06-04 10:32:38] 2025-06-04 08:07:02,904 [wrapper] cleanup supervisor_pilot 19451 26271
[2025-06-04 10:32:38] 2025-06-04 08:07:02,989 [wrapper] Test setup, not cleaning
[2025-06-04 10:32:38] 2025-06-04 08:07:03,121 [wrapper] apfmon messages muted
[2025-06-04 10:32:38] 2025-06-04 08:07:03,204 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:32:38] 2025-06-04 08:07:03,262 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:32:38]  *** Error codes and diagnostics ***
[2025-06-04 10:32:38]     "exeErrorCode": 0,
[2025-06-04 10:32:38]     "exeErrorDiag": "",
[2025-06-04 10:32:38]     "pilotErrorCode": 0,
[2025-06-04 10:32:38]     "pilotErrorDiag": "",
[2025-06-04 10:32:38]  *** Listing of results directory ***
[2025-06-04 10:32:38] total 393220
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 10:32:38] -rwx------. 1 boinc boinc     37140 Jun  3 18:51 runpilot2-wrapper.sh
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:51 queuedata.json
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:32:38] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:09 run_atlas
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:09 job.xml
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:09 init_data.xml
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc 216935205 Jun  4 06:09 EVNT.45006593._001574.pool.root.1
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:09 start_atlas.sh
[2025-06-04 10:32:38] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:09 shared
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc    508881 Jun  4 06:09 input.tar.gz
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:09 boinc_lockfile
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:26 pandaJob.out
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc    986077 Jun  4 06:27 agis_schedconf.cvmfs.json
[2025-06-04 10:32:38] drwx------. 4 boinc boinc      4096 Jun  4 06:27 pilot3
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc 178885238 Jun  4 10:03 HITS.45006595._039246.pool.root.1
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:03 boinc_task_state.xml
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc      1013 Jun  4 10:04 memory_monitor_summary.json
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc   1603667 Jun  4 10:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc    376584 Jun  4 10:05 log.45006595._039246.job.log.tgz.1
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc        95 Jun  4 10:06 pilot_heartbeat.json
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc      7680 Jun  4 10:06 heartbeat.json
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc      4539 Jun  4 10:07 pilotlog.txt
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc   1131186 Jun  4 10:07 log.45006595._039246.job.log.1
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc       357 Jun  4 10:07 output.list
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:07 runtime_log
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc   1525760 Jun  4 10:07 result.tar.gz
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc      8659 Jun  4 10:07 runtime_log.err
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc       656 Jun  4 10:07 fCTLDmU2jg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvKZKDm3wmrZm.diag
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:32 boinc_mmap_file
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:32 wrapper_checkpoint.txt
[2025-06-04 10:32:38] -rw-r--r--. 1 boinc boinc     20492 Jun  4 10:32 stderr.txt
[2025-06-04 10:32:38] HITS file was successfully produced:
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc 178885238 Jun  4 10:03 shared/HITS.pool.root.1
[2025-06-04 10:32:38]  *** Contents of shared directory: ***
[2025-06-04 10:32:38] total 388556
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc 216935205 Jun  4 06:09 ATLAS.root_0
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:09 start_atlas.sh
[2025-06-04 10:32:38] -rw-r--r--. 2 boinc boinc    508881 Jun  4 06:09 input.tar.gz
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc 178885238 Jun  4 10:03 HITS.pool.root.1
[2025-06-04 10:32:38] -rw-------. 1 boinc boinc   1525760 Jun  4 10:07 result.tar.gz
10:32:40 (12675): run_atlas exited; CPU time 50030.532985
10:32:40 (12675): called boinc_finish(0)

</stderr_txt>
]]>

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