Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:33:37 (949897): wrapper (7.7.26015): starting
15:33:37 (949897): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:33:38] Arguments: --nthreads 8
[2025-06-03 15:33:38] Threads: 8
[2025-06-03 15:33:38] Checking for CVMFS
[2025-06-03 15:33:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:33:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:33:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:33:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:33:38] 2.12.6.0 9880 322 75848 146753 1 187 18937285 32935937 2767 16776704 0 1610383 99.998 80637 40278 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 15:33:38] CVMFS is ok
[2025-06-03 15:33:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:33:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:33:38] Further information can be found at the LHC@home message board.
[2025-06-03 15:33:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:33:38] Checking for apptainer binary...
[2025-06-03 15:33:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:33:38] Running /usr/bin/apptainer --version
[2025-06-03 15:33:38] apptainer version 1.4.1-1.el9
[2025-06-03 15:33:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:33:38] c-8-39.aglt2.org
[2025-06-03 15:33:38] apptainer works
[2025-06-03 15:33:38] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:33:38] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:33:38] Starting ATLAS job with PandaID=6677783056
[2025-06-03 15:33:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:05:22]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:05:22]  mtime=0
[2025-06-03 17:05:22]  protocol_id=None
[2025-06-03 17:05:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 17:05:22]  replicas=None
[2025-06-03 17:05:22]  scope=mc23_13p6TeV
[2025-06-03 17:05:22]  status=None
[2025-06-03 17:05:22]  status_code=0
[2025-06-03 17:05:22]  storage_token=
[2025-06-03 17:05:22]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6677783056/log.45006595._039020.job.log.tgz.1
[2025-06-03 17:05:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/df/log.45006595._039020.job.log.tgz.1
[2025-06-03 17:05:22]  workdir=None
[2025-06-03 17:05:22] ]
[2025-06-03 17:05:22] 2025-06-03 21:04:56,020 | INFO     | transferring file log.45006595._039020.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6677783056/log.45006595._039020.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 17:05:22] 2025-06-03 21:04:56,020 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6677783056/log.45006595._039020.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._039020.job
[2025-06-03 17:05:22] 2025-06-03 21:04:56,030 | INFO     | adding to output.list: log.45006595._039020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/df/log.45006595._039020.job.log.tg
[2025-06-03 17:05:22] 2025-06-03 21:04:56,031 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 17:05:22] 2025-06-03 21:04:56,031 | INFO     | summary of transferred files:
[2025-06-03 17:05:22] 2025-06-03 21:04:56,031 | INFO     |  -- lfn=log.45006595._039020.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 17:05:22] 2025-06-03 21:04:56,031 | INFO     | stage-out finished correctly
[2025-06-03 17:05:22] 2025-06-03 21:04:56,110 | WARNING  | process 960061 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 17:05:22] 2025-06-03 21:04:56,110 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677783056/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:05:22] 2025-06-03 21:04:56,268 | INFO     | number of running child processes to parent process 960061: 1
[2025-06-03 17:05:22] 2025-06-03 21:04:56,268 | INFO     | maximum number of monitored processes: 6
[2025-06-03 17:05:22] 2025-06-03 21:04:58,770 | INFO     | monitor loop #404: job 0:6677783056 is in state 'finished'
[2025-06-03 17:05:22] 2025-06-03 21:04:58,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 17:05:22] 2025-06-03 21:04:58,830 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 17:05:22] 2025-06-03 21:04:59,137 | INFO     | job 6677783056 has state=finished
[2025-06-03 17:05:22] 2025-06-03 21:04:59,137 | INFO     | preparing for final server update for job 6677783056 in state='finished'
[2025-06-03 17:05:22] 2025-06-03 21:04:59,137 | INFO     | this job has now completed (state=finished)
[2025-06-03 17:05:22] 2025-06-03 21:04:59,137 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 17:05:22] 2025-06-03 21:04:59,138 | INFO     | log transfer has been attempted: DONE
[2025-06-03 17:05:22] 2025-06-03 21:04:59,138 | INFO     | job 6677783056 has finished - writing final server update
[2025-06-03 17:05:22] 2025-06-03 21:04:59,138 | INFO     | total number of processed events: 400 (read)
[2025-06-03 17:05:22] 2025-06-03 21:04:59,151 | INFO     | executing command: lscpu
[2025-06-03 17:05:22] 2025-06-03 21:04:59,189 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 17:05:22] 2025-06-03 21:05:01,273 | INFO     | monitor loop #405: job 0:6677783056 is in state 'finished'
[2025-06-03 17:05:22] 2025-06-03 21:05:01,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,528 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 17:05:22] 2025-06-03 21:05:01,528 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677783056/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,528 | INFO     | extracted standard info from prmon json
[2025-06-03 17:05:22] 2025-06-03 21:05:01,528 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:05:22] 2025-06-03 21:05:01,529 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:05:22] 2025-06-03 21:05:01,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:05:22] 2025-06-03 21:05:01,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:05:22] 2025-06-03 21:05:01,530 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:05:22] 2025-06-03 21:05:01,530 | INFO     | sum of square deviations: 177275882.0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,530 | INFO     | sum of deviations: 10819271161.0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | mean x: 1748982053.0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | mean y: 2109005.4096385543
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | -- intersect: -106739489872.26213
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | intersect: -106739489872.26213
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | chi2: 0.9137581597926018
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | -- intersect: -106739489872.26213
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | current memory leak: 61.03 B/s (using 83 data points, chi2=0.91)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | ..............................
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | . Timing measurements:
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | . get job = 0 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,531 | INFO     | . initial setup = 2 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | . payload setup = 4 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | . stage-in = 0 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | . payload execution = 5448 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | . stage-out = 0 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | . log creation = 0 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,532 | INFO     | ..............................
[2025-06-03 17:05:22] 2025-06-03 21:05:01,583 | INFO     | 
[2025-06-03 17:05:22] 2025-06-03 21:05:01,583 | INFO     | job summary report
[2025-06-03 17:05:22] 2025-06-03 21:05:01,583 | INFO     | --------------------------------------------------
[2025-06-03 17:05:22] 2025-06-03 21:05:01,583 | INFO     | PanDA job id: 6677783056
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | task id: 45006595
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | errors: (none)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | pilot state: finished 
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | transexitcode: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | exeerrorcode: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | exeerrordiag: 
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | exitcode: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | exitmsg: OK
[2025-06-03 17:05:22] 2025-06-03 21:05:01,584 | INFO     | cpuconsumptiontime: 37754 s
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | nevents: 400
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | neventsw: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | pid: 960061
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | pgrp: 960061
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | corecount: 8
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | event service: False
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | sizes: {0: 2405013, 1: 2405212, 3: 2405418, 11: 2405446, 5456: 2431934, 5457: 2440875, 5460: 2441059, 5462: 2441229}
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | --------------------------------------------------
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | 
[2025-06-03 17:05:22] 2025-06-03 21:05:01,585 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | job 6677783056 has completed (purged errors)
[2025-06-03 17:05:22] 2025-06-03 21:05:01,599 | INFO     | overall cleanup function is called
[2025-06-03 17:05:22] 2025-06-03 21:05:02,607 | INFO     | --- collectZombieJob: --- 10, [960061]
[2025-06-03 17:05:22] 2025-06-03 21:05:02,607 | INFO     | zombie collector waiting for pid 960061
[2025-06-03 17:05:22] 2025-06-03 21:05:02,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:05:22] 2025-06-03 21:05:02,607 | INFO     | collected zombie processes
[2025-06-03 17:05:22] 2025-06-03 21:05:02,607 | INFO     | will attempt to kill all subprocesses of pid=960061
[2025-06-03 17:05:22] 2025-06-03 21:05:02,810 | INFO     | process IDs to be killed: [960061] (in reverse order)
[2025-06-03 17:05:22] 2025-06-03 21:05:02,854 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:05:22] 2025-06-03 21:05:02,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:05:22] 2025-06-03 21:05:02,858 | INFO     | did not find any defunct processes belonging to 960061
[2025-06-03 17:05:22] 2025-06-03 21:05:02,861 | INFO     | did not find any defunct processes belonging to 960061
[2025-06-03 17:05:22] 2025-06-03 21:05:02,862 | INFO     | ready for new job
[2025-06-03 17:05:22] 2025-06-03 21:05:02,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:05:22] 2025-06-03 21:05:02,863 | INFO     | **************************************
[2025-06-03 17:05:22] 2025-06-03 21:05:02,863 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:05:22] 2025-06-03 21:05:02,863 | INFO     | **************************************
[2025-06-03 17:05:22] 2025-06-03 21:05:02,863 | INFO     | 
[2025-06-03 17:05:22] 2025-06-03 21:05:02,876 | INFO     | architecture information:
[2025-06-03 17:05:22] 2025-06-03 21:05:02,876 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:05:22] 2025-06-03 21:05:02,884 | INFO     | cat /etc/os-release:
[2025-06-03 17:05:22] NAME="CentOS Linux"
[2025-06-03 17:05:22] VERSION="7 (Core)"
[2025-06-03 17:05:22] ID="centos"
[2025-06-03 17:05:22] ID_LIKE="rhel fedora"
[2025-06-03 17:05:22] VERSION_ID="7"
[2025-06-03 17:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:05:22] ANSI_COLOR="0;31"
[2025-06-03 17:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:05:22] HOME_URL="https://www.centos.org/"
[2025-06-03 17:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:05:22] 
[2025-06-03 17:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:05:22] 
[2025-06-03 17:05:22] 2025-06-03 21:05:02,884 | INFO     | **************************************
[2025-06-03 17:05:22] 2025-06-03 21:05:03,387 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | INFO     | sufficient remaining disk space (74138517504 B)
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | INFO     | update_server=False
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:05:22] 2025-06-03 21:05:03,397 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:05:22] 2025-06-03 21:05:03,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:05:22] 2025-06-03 21:05:03,398 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:05:22] 2025-06-03 21:05:03,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:05:22] 2025-06-03 21:05:03,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:05:22] 2025-06-03 21:05:03,511 | INFO     | all data control threads have been joined
[2025-06-03 17:05:22] 2025-06-03 21:05:03,774 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 17:05:22] 2025-06-03 21:05:03,774 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 17:05:22] 2025-06-03 21:05:03,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:05:22] 2025-06-03 21:05:03,774 | INFO     | will abort loop
[2025-06-03 17:05:22] 2025-06-03 21:05:04,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:05:22] 2025-06-03 21:05:04,102 | INFO     | all payload control threads have been joined
[2025-06-03 17:05:22] 2025-06-03 21:05:04,402 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,403 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,516 | INFO     | [data] control thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,530 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,701 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,779 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,844 | INFO     | [job] validate thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:04,897 | INFO     | all job control threads have been joined
[2025-06-03 17:05:22] 2025-06-03 21:05:04,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:05:22] 2025-06-03 21:05:04,951 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:05,068 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:05,107 | INFO     | [payload] control thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:05,481 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:05,484 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:05,902 | INFO     | [job] control thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:06,098 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:08,932 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:14,253 | INFO     | job.realtimelogging is not enabled
[2025-06-03 17:05:22] 2025-06-03 21:05:15,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:05:22] 2025-06-03 21:05:17,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300039018304)>', '<ExcThread(monitor, started 140299334579968)>']
[2025-06-03 17:05:22] 2025-06-03 21:05:17,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:05:22] 2025-06-03 21:05:17,470 | INFO     | [monitor] control thread has ended
[2025-06-03 17:05:22] 2025-06-03 21:05:22,027 | INFO     | all workflow threads have been joined
[2025-06-03 17:05:22] 2025-06-03 21:05:22,028 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:05:22] 2025-06-03 21:05:22,028 | INFO     | traces error code: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:22,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:05:22] 2025-06-03 21:05:22,096 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:05:22] 2025-06-03 21:05:22,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:05:22] 2025-06-03 21:05:22,100 [wrapper] pilotpid: 953522
[2025-06-03 17:05:22] 2025-06-03 21:05:22,101 [wrapper] Pilot exit status: 0
[2025-06-03 17:05:22] 2025-06-03 21:05:22,107 [wrapper] pandaids: 6677783056
[2025-06-03 17:05:22] 2025-06-03 21:05:22,134 [wrapper] cleanup supervisor_pilot 1189790 953523
[2025-06-03 17:05:22] 2025-06-03 21:05:22,136 [wrapper] Test setup, not cleaning
[2025-06-03 17:05:22] 2025-06-03 21:05:22,137 [wrapper] apfmon messages muted
[2025-06-03 17:05:22] 2025-06-03 21:05:22,139 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:05:22] 2025-06-03 21:05:22,141 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:05:22]  *** Error codes and diagnostics ***
[2025-06-03 17:05:22]     "exeErrorCode": 0,
[2025-06-03 17:05:22]     "exeErrorDiag": "",
[2025-06-03 17:05:22]     "pilotErrorCode": 0,
[2025-06-03 17:05:22]     "pilotErrorDiag": "",
[2025-06-03 17:05:22]  *** Listing of results directory ***
[2025-06-03 17:05:22] total 388120
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 12:42 queuedata.json
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 12:42 pilot3.tar.gz
[2025-06-03 17:05:22] -rwx------. 1 boincer umatlas     37140 Jun  3 12:44 runpilot2-wrapper.sh
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas       100 Jun  3 15:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:05:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 15:33 run_atlas
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas       105 Jun  3 15:33 job.xml
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas 215460285 Jun  3 15:33 EVNT.45006593._001565.pool.root.1
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:33 start_atlas.sh
[2025-06-03 17:05:22] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 15:33 shared
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 15:33 input.tar.gz
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas         0 Jun  3 15:33 boinc_lockfile
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 15:33 pandaJob.out
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas    986893 Jun  3 15:33 agis_schedconf.cvmfs.json
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas   1603667 Jun  3 15:33 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:05:22] drwx------. 4 boincer umatlas      4096 Jun  3 15:33 pilot3
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas      6613 Jun  3 17:03 init_data.xml
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas       529 Jun  3 17:04 boinc_task_state.xml
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas 176453582 Jun  3 17:04 HITS.45006595._039020.pool.root.1
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas        95 Jun  3 17:04 pilot_heartbeat.json
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas      1028 Jun  3 17:04 memory_monitor_summary.json
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas    313768 Jun  3 17:04 log.45006595._039020.job.log.tgz.1
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas      7709 Jun  3 17:05 heartbeat.json
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 17:05 boinc_mmap_file
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas        27 Jun  3 17:05 wrapper_checkpoint.txt
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas      4734 Jun  3 17:05 pilotlog.txt
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas    529488 Jun  3 17:05 log.45006595._039020.job.log.1
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas       357 Jun  3 17:05 output.list
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas       620 Jun  3 17:05 runtime_log
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas    860160 Jun  3 17:05 result.tar.gz
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas      8649 Jun  3 17:05 runtime_log.err
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas       649 Jun  3 17:05 NQTMDmEvjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT7kKDmq7FA2n.diag
[2025-06-03 17:05:22] -rw-r--r--. 1 boincer umatlas     21628 Jun  3 17:05 stderr.txt
[2025-06-03 17:05:22] HITS file was successfully produced:
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas 176453582 Jun  3 17:04 shared/HITS.pool.root.1
[2025-06-03 17:05:22]  *** Contents of shared directory: ***
[2025-06-03 17:05:22] total 384096
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas 215460285 Jun  3 15:33 ATLAS.root_0
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:33 start_atlas.sh
[2025-06-03 17:05:22] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 15:33 input.tar.gz
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas 176453582 Jun  3 17:04 HITS.pool.root.1
[2025-06-03 17:05:22] -rw-------. 1 boincer umatlas    860160 Jun  3 17:05 result.tar.gz
17:05:23 (949897): run_atlas exited; CPU time 37936.121575
17:05:23 (949897): called boinc_finish(0)

</stderr_txt>
]]>

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