Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 12:38:14 (9956): Detected: vboxwrapper 26206
2025-06-04 12:38:14 (9956): Detected: BOINC client v7.16.20
2025-06-04 12:38:15 (9956): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-06-04 12:38:15 (9956): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 12:38:15 (9956): Create VM. (boinc_c9e9dff99c1b33bd, slot#1)
2025-06-04 12:38:16 (9956): Setting Memory Size for VM. (4800MB)
2025-06-04 12:38:16 (9956): Setting CPU Count for VM. (8)
2025-06-04 12:38:16 (9956): Setting Chipset Options for VM.
2025-06-04 12:38:17 (9956): Setting Graphics Controller Options for VM.
2025-06-04 12:38:17 (9956): Setting Boot Options for VM.
2025-06-04 12:38:17 (9956): Setting Network Configuration for NAT.
2025-06-04 12:38:18 (9956): Enabling VM Network Access.
2025-06-04 12:38:18 (9956): Disabling USB Support for VM.
2025-06-04 12:38:18 (9956): Disabling COM Port Support for VM.
2025-06-04 12:38:18 (9956): Disabling LPT Port Support for VM.
2025-06-04 12:38:19 (9956): Disabling Audio Support for VM.
2025-06-04 12:38:19 (9956): Disabling Clipboard Support for VM.
2025-06-04 12:38:19 (9956): Disabling Drag and Drop Support for VM.
2025-06-04 12:38:19 (9956): Adding storage controller(s) to VM.
2025-06-04 12:38:20 (9956): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 12:38:21 (9956): Adding VirtualBox Guest Additions to VM.
2025-06-04 12:38:21 (9956): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 12:38:21 (9956): forwarding host port 50750 to guest port 80
2025-06-04 12:38:22 (9956): Enabling remote desktop for VM.
2025-06-04 12:38:22 (9956): Required extension pack not installed, remote desktop not enabled.
2025-06-04 12:38:22 (9956): Enabling shared directory for VM.
2025-06-04 12:38:22 (9956): Starting VM using VBoxManage interface. (boinc_c9e9dff99c1b33bd, slot#1)
2025-06-04 12:38:26 (9956): Successfully started VM. (PID = '16896')
2025-06-04 12:38:26 (9956): Reporting VM Process ID to BOINC.
2025-06-04 12:38:26 (9956): Guest Log: BIOS: VirtualBox 6.1.32
2025-06-04 12:38:26 (9956): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 12:38:26 (9956): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 12:38:26 (9956): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 12:38:26 (9956): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 12:38:26 (9956): Detected: Web Application Enabled (http://localhost:50750)
2025-06-04 12:38:26 (9956): Preference change detected
2025-06-04 12:38:26 (9956): Setting CPU throttle for VM. (15%)
2025-06-04 12:38:26 (9956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:38:28 (9956): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 12:38:28 (9956): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 12:38:33 (9956): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 12:38:33 (9956): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 12:38:33 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 12:38:34 (9956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 12:38:52 (9956): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 12:38:52 (9956): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 12:39:17 (9956): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000064 main     Log opened 2025-06-04T12:39:14.721345000Z
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000112 main     OS Product: Linux
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000125 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000136 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000147 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000147 main     Process ID: 1385
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000147 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 12:39:17 (9956): Guest Log: 00:00:00.000657 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 12:39:17 (9956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 12:39:17 (9956): Guest Log: [INFO] Mounting shared directory
2025-06-04 12:39:17 (9956): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 12:39:23 (9956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 12:39:23 (9956): Guest Log: [INFO] Detected branch: prod
2025-06-04 12:39:24 (9956): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 12:39:24 (9956): Guest Log: Copying input files
2025-06-04 12:39:27 (9956): Guest Log: 00:00:10.003178 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 259 573 000ns (GuestNow=1 749 029 966 463 424 000 ns GuestLast=1 749 040 754 722 997 000 ns fSetTimeLastLoop=true )
2025-06-04 12:39:30 (9956): Guest Log: Copied input files into RunAtlas.
2025-06-04 12:39:30 (9956): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 12:39:30 (9956): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 12:39:30 (9956): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 12:39:30 (9956): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 12:39:40 (9956): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 12:39:41 (9956): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 12:39:41 (9956): Guest Log: 2.6.3.0 1664 0 30188 146775 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 12:39:42 (9956): Guest Log: copied the webapp to /var/www
2025-06-04 12:39:42 (9956): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 12:39:42 (9956): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 12:39:42 (9956): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 12:39:42 (9956): Guest Log:  *** Starting ATLAS job. (PandaID=6677785186 taskID=45006595) ***
2025-06-04 14:18:30 (9956): Status Report: Elapsed Time: '6000.000000'
2025-06-04 14:18:30 (9956): Status Report: CPU Time: '5114.359375'
2025-06-04 14:55:10 (9956): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 14:55:20 (9956): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 15:58:45 (9956): Status Report: Elapsed Time: '12000.000000'
2025-06-04 15:58:45 (9956): Status Report: CPU Time: '12204.718750'
2025-06-04 17:38:09 (9956): Guest Log:  *** Job finished ***
2025-06-04 17:38:09 (9956): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:53,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:54,903 | INFO     | [job] queue monitor thread has finished
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:55,109 | INFO     | [data] queue_monitor thread has finished
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:55,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712531326784)>', '<ExcThread(monitor, started 140711584331520)>']
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:56,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:37:56,111 | INFO     | [monitor] control thread has ended
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:00,967 | INFO     | all workflow threads have been joined
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:00,967 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:00,967 | INFO     | traces error code: 0
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:00,967 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:01,286 [wrapper] ==== pilot stdout END ====
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:01,383 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:01,385 [wrapper] pilotpid: 6019
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:01,387 [wrapper] Pilot exit status: 0
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:01,721 [wrapper] pandaids: 6677785186
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:02,028 [wrapper] cleanup supervisor_pilot  7745 6020
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:02,032 [wrapper] Test setup, not cleaning
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:02,034 [wrapper] apfmon messages muted
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:02,038 [wrapper] ==== wrapper stdout END ====
2025-06-04 17:38:09 (9956): Guest Log: 2025-06-04 14:38:02,134 [wrapper] ==== wrapper stderr END ====
2025-06-04 17:38:09 (9956): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 17:38:09 (9956): Guest Log:     "exeErrorCode": 0,
2025-06-04 17:38:09 (9956): Guest Log:     "exeErrorDiag": "",
2025-06-04 17:38:09 (9956): Guest Log:     "pilotErrorCode": 0,
2025-06-04 17:38:09 (9956): Guest Log:     "pilotErrorDiag": "",
2025-06-04 17:38:09 (9956): Guest Log:  *** Listing of results directory ***
2025-06-04 17:38:09 (9956): Guest Log: total 179752
2025-06-04 17:38:09 (9956): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 16:42 pilot3.tar.gz
2025-06-04 17:38:09 (9956): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 16:53 queuedata.json
2025-06-04 17:38:09 (9956): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 16:54 runpilot2-wrapper.sh
2025-06-04 17:38:09 (9956): Guest Log: -rwxr-xr-x. 1 atlas atlas     11678 Jun  4 09:39 init_data.xml
2025-06-04 17:38:09 (9956): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 Jun  4 09:39 input.tar.gz
2025-06-04 17:38:09 (9956): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 09:39 start_atlas.sh
2025-06-04 17:38:09 (9956): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 09:39 EVNT.45006593._001586.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 17:38:09 (9956): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  4 09:39 pandaJob.out
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas    986766 Jun  4 09:41 agis_schedconf.cvmfs.json
2025-06-04 17:38:09 (9956): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 09:41 pilot3
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas 178249373 Jun  4 14:35 HITS.45006595._039537.pool.root.1
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas      1028 Jun  4 14:36 memory_monitor_summary.json
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 14:37 agis_ddmendpoints.agis.ALL.json
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas    336723 Jun  4 14:37 log.45006595._039537.job.log.tgz.1
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 14:37 pilot_heartbeat.json
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas      7720 Jun  4 14:37 heartbeat.json
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 14:38 pilotlog.txt
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas    690308 Jun  4 14:38 log.45006595._039537.job.log.1
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 14:38 output.list
2025-06-04 17:38:09 (9956): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 14:38 runtime_log
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas   1044480 Jun  4 14:38 result.tar.gz
2025-06-04 17:38:09 (9956): Guest Log: -rw-r--r--. 1 atlas atlas      8593 Jun  4 14:38 runtime_log.err
2025-06-04 17:38:09 (9956): Guest Log: -rw-------. 1 atlas atlas       657 Jun  4 14:38 9UoNDmP5jg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNDlKDm7SLtjm.diag
2025-06-04 17:38:10 (9956): Guest Log: Looking for outputfile HITS.45006595._039537.pool.root.1
2025-06-04 17:38:10 (9956): Guest Log: HITS file was successfully produced
2025-06-04 17:38:10 (9956): Guest Log: -rw-------. 1 atlas atlas 178249373 Jun  4 14:35 /home/atlas/RunAtlas/HITS.45006595._039537.pool.root.1
2025-06-04 17:38:13 (9956): Guest Log: Successfully finished the ATLAS job!
2025-06-04 17:38:13 (9956): Guest Log: Copying the results back to the shared directory!
2025-06-04 17:38:13 (9956): Guest Log:  *** Contents of shared directory: ***
2025-06-04 17:38:13 (9956): Guest Log: total 386252
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root 215685526 Jun  4 09:38 ATLAS.root_0
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root 178249373 Jun  4  2025 HITS.pool.root.1
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root     11678 Jun  4 09:38 init_data.xml
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root    508885 Jun  3 19:39 input.tar.gz
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root   1044480 Jun  4  2025 result.tar.gz
2025-06-04 17:38:13 (9956): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 19:39 start_atlas.sh
2025-06-04 17:38:13 (9956): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 17:38:13 (9956): VM Completion File Detected.
2025-06-04 17:38:13 (9956): Powering off VM.
2025-06-04 17:38:14 (9956): Successfully stopped VM.
2025-06-04 17:38:14 (9956): Deregistering VM. (boinc_c9e9dff99c1b33bd, slot#1)
2025-06-04 17:38:14 (9956): Removing network bandwidth throttle group from VM.
2025-06-04 17:38:14 (9956): Removing VM from VirtualBox.
17:38:19 (9956): called boinc_finish(0)

</stderr_txt>
]]>

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