Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:26:27 (918209): wrapper (7.7.26015): starting
15:26:27 (918209): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:26:27] Arguments: --nthreads 8
[2025-06-03 15:26:27] Threads: 8
[2025-06-03 15:26:27] Checking for CVMFS
[2025-06-03 15:26:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:26:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:26:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:26:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:26:28] 2.12.6.0 9880 315 72168 146753 1 186 18937285 32935937 2953 16776704 0 1535201 99.998 80636 40277 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 15:26:28] CVMFS is ok
[2025-06-03 15:26:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:26:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:26:28] Further information can be found at the LHC@home message board.
[2025-06-03 15:26:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:26:28] Checking for apptainer binary...
[2025-06-03 15:26:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:26:28] Running /usr/bin/apptainer --version
[2025-06-03 15:26:28] apptainer version 1.4.1-1.el9
[2025-06-03 15:26:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:26:28] c-8-39.aglt2.org
[2025-06-03 15:26:28] apptainer works
[2025-06-03 15:26:28] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:26:28] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:26:28] Starting ATLAS job with PandaID=6677785209
[2025-06-03 15:26:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:58:07]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:58:07]  is_altstaged=None
[2025-06-03 16:58:07]  is_tar=False
[2025-06-03 16:58:07]  lfn=log.45006595._039560.job.log.tgz.1
[2025-06-03 16:58:07]  mtime=0
[2025-06-03 16:58:07]  protocol_id=None
[2025-06-03 16:58:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 16:58:07]  replicas=None
[2025-06-03 16:58:07]  scope=mc23_13p6TeV
[2025-06-03 16:58:07]  status=None
[2025-06-03 16:58:07]  status_code=0
[2025-06-03 16:58:07]  storage_token=
[2025-06-03 16:58:07]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677785209/log.45006595._039560.job.log.tgz.1
[2025-06-03 16:58:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/05/log.45006595._039560.job.log.tgz.1
[2025-06-03 16:58:07]  workdir=None
[2025-06-03 16:58:07] ]
[2025-06-03 16:58:07] 2025-06-03 20:57:42,877 | INFO     | transferring file log.45006595._039560.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677785209/log.45006595._039560.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 16:58:07] 2025-06-03 20:57:42,877 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677785209/log.45006595._039560.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._039560.job
[2025-06-03 16:58:07] 2025-06-03 20:57:42,894 | INFO     | adding to output.list: log.45006595._039560.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/05/log.45006595._039560.job.log.tg
[2025-06-03 16:58:07] 2025-06-03 20:57:42,895 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 16:58:07] 2025-06-03 20:57:42,895 | INFO     | summary of transferred files:
[2025-06-03 16:58:07] 2025-06-03 20:57:42,895 | INFO     |  -- lfn=log.45006595._039560.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 16:58:07] 2025-06-03 20:57:42,896 | INFO     | stage-out finished correctly
[2025-06-03 16:58:07] 2025-06-03 20:57:43,885 | INFO     | monitor loop #405: job 0:6677785209 is in state 'finished'
[2025-06-03 16:58:07] 2025-06-03 20:57:43,885 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:58:07] 2025-06-03 20:57:44,019 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 16:58:07] 2025-06-03 20:57:44,726 | INFO     | job 6677785209 has state=finished
[2025-06-03 16:58:07] 2025-06-03 20:57:44,726 | INFO     | preparing for final server update for job 6677785209 in state='finished'
[2025-06-03 16:58:07] 2025-06-03 20:57:44,794 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 16:58:07] 2025-06-03 20:57:44,795 | INFO     | this job has now completed (state=finished)
[2025-06-03 16:58:07] 2025-06-03 20:57:44,795 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 16:58:07] 2025-06-03 20:57:44,795 | INFO     | log transfer has been attempted: DONE
[2025-06-03 16:58:07] 2025-06-03 20:57:44,795 | INFO     | job 6677785209 has finished - writing final server update
[2025-06-03 16:58:07] 2025-06-03 20:57:44,796 | INFO     | total number of processed events: 400 (read)
[2025-06-03 16:58:07] 2025-06-03 20:57:44,811 | INFO     | executing command: lscpu
[2025-06-03 16:58:07] 2025-06-03 20:57:44,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 16:58:07] 2025-06-03 20:57:46,389 | INFO     | monitor loop #406: job 0:6677785209 is in state 'finished'
[2025-06-03 16:58:07] 2025-06-03 20:57:46,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,169 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 16:58:07] 2025-06-03 20:57:48,169 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677785209/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,170 | INFO     | extracted standard info from prmon json
[2025-06-03 16:58:07] 2025-06-03 20:57:48,170 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:58:07] 2025-06-03 20:57:48,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:58:07] 2025-06-03 20:57:48,171 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:58:07] 2025-06-03 20:57:48,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:58:07] 2025-06-03 20:57:48,174 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:58:07] 2025-06-03 20:57:48,174 | INFO     | sum of square deviations: 177275882.0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,174 | INFO     | sum of deviations: 9203177787.000002
[2025-06-03 16:58:07] 2025-06-03 20:57:48,175 | INFO     | mean x: 1748981622.0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,175 | INFO     | mean y: 2108930.8554216865
[2025-06-03 16:58:07] 2025-06-03 20:57:48,175 | INFO     | -- intersect: -90795289067.48952
[2025-06-03 16:58:07] 2025-06-03 20:57:48,175 | INFO     | intersect: -90795289067.48952
[2025-06-03 16:58:07] 2025-06-03 20:57:48,175 | INFO     | chi2: 0.7449821070488943
[2025-06-03 16:58:07] 2025-06-03 20:57:48,176 | INFO     | -- intersect: -90795289067.48952
[2025-06-03 16:58:07] 2025-06-03 20:57:48,176 | INFO     | current memory leak: 51.91 B/s (using 83 data points, chi2=0.74)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,176 | INFO     | ..............................
[2025-06-03 16:58:07] 2025-06-03 20:57:48,176 | INFO     | . Timing measurements:
[2025-06-03 16:58:07] 2025-06-03 20:57:48,176 | INFO     | . get job = 0 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . initial setup = 2 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . payload setup = 3 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . stage-in = 0 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . payload execution = 5448 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . stage-out = 0 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | . log creation = 0 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,177 | INFO     | ..............................
[2025-06-03 16:58:07] 2025-06-03 20:57:48,283 | INFO     | 
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | job summary report
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | --------------------------------------------------
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | PanDA job id: 6677785209
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | task id: 45006595
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | errors: (none)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | pilot state: finished 
[2025-06-03 16:58:07] 2025-06-03 20:57:48,284 | INFO     | transexitcode: 0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | exeerrorcode: 0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | exeerrordiag: 
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | exitcode: 0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | exitmsg: OK
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | cpuconsumptiontime: 38143 s
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | nevents: 400
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | neventsw: 0
[2025-06-03 16:58:07] 2025-06-03 20:57:48,285 | INFO     | pid: 928461
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | pgrp: 928461
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | corecount: 8
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | event service: False
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | sizes: {0: 2405178, 3: 2405384, 11: 2405412, 5452: 2431870, 5453: 2431869, 5454: 2440866, 5455: 2441050, 5459: 2441220}
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | --------------------------------------------------
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | 
[2025-06-03 16:58:07] 2025-06-03 20:57:48,286 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 16:58:07] 2025-06-03 20:57:48,300 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,300 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,300 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,303 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:58:07] 2025-06-03 20:57:48,303 | INFO     | job 6677785209 has completed (purged errors)
[2025-06-03 16:58:07] 2025-06-03 20:57:48,303 | INFO     | overall cleanup function is called
[2025-06-03 16:58:07] 2025-06-03 20:57:49,311 | INFO     | --- collectZombieJob: --- 10, [928461]
[2025-06-03 16:58:07] 2025-06-03 20:57:49,311 | INFO     | zombie collector waiting for pid 928461
[2025-06-03 16:58:07] 2025-06-03 20:57:49,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:58:07] 2025-06-03 20:57:49,311 | INFO     | collected zombie processes
[2025-06-03 16:58:07] 2025-06-03 20:57:49,311 | INFO     | will attempt to kill all subprocesses of pid=928461
[2025-06-03 16:58:07] 2025-06-03 20:57:49,632 | INFO     | process IDs to be killed: [928461] (in reverse order)
[2025-06-03 16:58:07] 2025-06-03 20:57:49,705 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:58:07] 2025-06-03 20:57:49,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:58:07] 2025-06-03 20:57:49,729 | INFO     | did not find any defunct processes belonging to 928461
[2025-06-03 16:58:07] 2025-06-03 20:57:49,743 | INFO     | did not find any defunct processes belonging to 928461
[2025-06-03 16:58:07] 2025-06-03 20:57:49,743 | INFO     | ready for new job
[2025-06-03 16:58:07] 2025-06-03 20:57:49,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:58:07] 2025-06-03 20:57:49,744 | INFO     | **************************************
[2025-06-03 16:58:07] 2025-06-03 20:57:49,744 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:58:07] 2025-06-03 20:57:49,745 | INFO     | **************************************
[2025-06-03 16:58:07] 2025-06-03 20:57:49,745 | INFO     | 
[2025-06-03 16:58:07] 2025-06-03 20:57:49,759 | INFO     | architecture information:
[2025-06-03 16:58:07] 2025-06-03 20:57:49,759 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:58:07] 2025-06-03 20:57:49,770 | INFO     | cat /etc/os-release:
[2025-06-03 16:58:07] NAME="CentOS Linux"
[2025-06-03 16:58:07] VERSION="7 (Core)"
[2025-06-03 16:58:07] ID="centos"
[2025-06-03 16:58:07] ID_LIKE="rhel fedora"
[2025-06-03 16:58:07] VERSION_ID="7"
[2025-06-03 16:58:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:58:07] ANSI_COLOR="0;31"
[2025-06-03 16:58:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:58:07] HOME_URL="https://www.centos.org/"
[2025-06-03 16:58:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:58:07] 
[2025-06-03 16:58:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:58:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:58:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:58:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:58:07] 
[2025-06-03 16:58:07] 2025-06-03 20:57:49,770 | INFO     | **************************************
[2025-06-03 16:58:07] 2025-06-03 20:57:50,026 | INFO     | PID=921896 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 16:58:07] 2025-06-03 20:57:50,026 | INFO     | .. there are 6 such processes running
[2025-06-03 16:58:07] 2025-06-03 20:57:50,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 16:58:07] 2025-06-03 20:57:50,286 | INFO     | sufficient remaining disk space (73629958144 B)
[2025-06-03 16:58:07] 2025-06-03 20:57:50,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:58:07] 2025-06-03 20:57:50,287 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:58:07] 2025-06-03 20:57:50,287 | INFO     | update_server=False
[2025-06-03 16:58:07] 2025-06-03 20:57:50,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:58:07] 2025-06-03 20:57:50,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:58:07] 2025-06-03 20:57:50,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:58:07] 2025-06-03 20:57:50,288 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 16:58:07] 2025-06-03 20:57:50,288 | INFO     | aborting loop
[2025-06-03 16:58:07] 2025-06-03 20:57:50,288 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:58:07] 2025-06-03 20:57:50,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:58:07] 2025-06-03 20:57:50,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:58:07] 2025-06-03 20:57:50,521 | INFO     | all payload control threads have been joined
[2025-06-03 16:58:07] 2025-06-03 20:57:50,871 | INFO     | all data control threads have been joined
[2025-06-03 16:58:07] 2025-06-03 20:57:51,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:58:07] 2025-06-03 20:57:51,282 | INFO     | all job control threads have been joined
[2025-06-03 16:58:07] 2025-06-03 20:57:51,292 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,293 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,424 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,443 | INFO     | [job] validate thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,526 | INFO     | [payload] control thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,574 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,645 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,768 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,877 | INFO     | [data] control thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:51,980 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:52,287 | INFO     | [job] control thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:52,576 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:53,017 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:53,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:58:07] 2025-06-03 20:57:54,289 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:57:54,295 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:58:00,707 | INFO     | job.realtimelogging is not enabled
[2025-06-03 16:58:07] 2025-06-03 20:58:01,712 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:58:07] 2025-06-03 20:58:02,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041106589504)>', '<ExcThread(monitor, started 140040495691520)>']
[2025-06-03 16:58:07] 2025-06-03 20:58:02,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:58:07] 2025-06-03 20:58:02,340 | INFO     | [monitor] control thread has ended
[2025-06-03 16:58:07] 2025-06-03 20:58:07,050 | INFO     | all workflow threads have been joined
[2025-06-03 16:58:07] 2025-06-03 20:58:07,050 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:58:07] 2025-06-03 20:58:07,051 | INFO     | traces error code: 0
[2025-06-03 16:58:07] 2025-06-03 20:58:07,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:58:07] 2025-06-03 20:58:07,159 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:58:07] 2025-06-03 20:58:07,162 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:58:07] 2025-06-03 20:58:07,164 [wrapper] pilotpid: 921896
[2025-06-03 16:58:07] 2025-06-03 20:58:07,166 [wrapper] Pilot exit status: 0
[2025-06-03 16:58:07] 2025-06-03 20:58:07,173 [wrapper] pandaids: 6677785209
[2025-06-03 16:58:07] 2025-06-03 20:58:07,222 [wrapper] cleanup supervisor_pilot 1146892 921897
[2025-06-03 16:58:07] 2025-06-03 20:58:07,223 [wrapper] Test setup, not cleaning
[2025-06-03 16:58:07] 2025-06-03 20:58:07,225 [wrapper] apfmon messages muted
[2025-06-03 16:58:07] 2025-06-03 20:58:07,227 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:58:07] 2025-06-03 20:58:07,228 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:58:07]  *** Error codes and diagnostics ***
[2025-06-03 16:58:07]     "exeErrorCode": 0,
[2025-06-03 16:58:07]     "exeErrorDiag": "",
[2025-06-03 16:58:07]     "pilotErrorCode": 0,
[2025-06-03 16:58:07]     "pilotErrorDiag": "",
[2025-06-03 16:58:07]  *** Listing of results directory ***
[2025-06-03 16:58:07] total 388820
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 12:42 pilot3.tar.gz
[2025-06-03 16:58:07] -rwx------. 1 boincer umatlas     37140 Jun  3 12:51 runpilot2-wrapper.sh
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 12:51 queuedata.json
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas       100 Jun  3 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:58:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 15:26 run_atlas
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas       105 Jun  3 15:26 job.xml
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas 215150311 Jun  3 15:26 EVNT.45006593._001587.pool.root.1
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:26 start_atlas.sh
[2025-06-03 16:58:07] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 15:26 shared
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 15:26 input.tar.gz
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas         0 Jun  3 15:26 boinc_lockfile
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas      2522 Jun  3 15:26 pandaJob.out
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas    986893 Jun  3 15:26 agis_schedconf.cvmfs.json
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas   1603667 Jun  3 15:26 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:58:07] drwx------. 4 boincer umatlas      4096 Jun  3 15:26 pilot3
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas      6613 Jun  3 16:54 init_data.xml
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas 177505909 Jun  3 16:57 HITS.45006595._039560.pool.root.1
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas        95 Jun  3 16:57 pilot_heartbeat.json
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas       529 Jun  3 16:57 boinc_task_state.xml
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas      1028 Jun  3 16:57 memory_monitor_summary.json
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas    297454 Jun  3 16:57 log.45006595._039560.job.log.tgz.1
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas      7700 Jun  3 16:57 heartbeat.json
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas        27 Jun  3 16:58 wrapper_checkpoint.txt
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 16:58 boinc_mmap_file
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas      4942 Jun  3 16:58 pilotlog.txt
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas    529925 Jun  3 16:58 log.45006595._039560.job.log.1
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas       357 Jun  3 16:58 output.list
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas       620 Jun  3 16:58 runtime_log
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas    849920 Jun  3 16:58 result.tar.gz
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas       650 Jun  3 16:58 UM3NDmU2jg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyLZKDm2qYNyn.diag
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas      8649 Jun  3 16:58 runtime_log.err
[2025-06-03 16:58:07] -rw-r--r--. 1 boincer umatlas     21464 Jun  3 16:58 stderr.txt
[2025-06-03 16:58:07] HITS file was successfully produced:
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas 177505909 Jun  3 16:57 shared/HITS.pool.root.1
[2025-06-03 16:58:07]  *** Contents of shared directory: ***
[2025-06-03 16:58:07] total 384812
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas 215150311 Jun  3 15:26 ATLAS.root_0
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 15:26 start_atlas.sh
[2025-06-03 16:58:07] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 15:26 input.tar.gz
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas 177505909 Jun  3 16:57 HITS.pool.root.1
[2025-06-03 16:58:07] -rw-------. 1 boincer umatlas    849920 Jun  3 16:58 result.tar.gz
16:58:08 (918209): run_atlas exited; CPU time 38316.592475
16:58:08 (918209): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN