Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:12:46 (1564479): wrapper (7.7.26015): starting
06:12:46 (1564479): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 06:12:46] Arguments: --nthreads 3
[2025-06-04 06:12:46] Threads: 3
[2025-06-04 06:12:46] Checking for CVMFS
[2025-06-04 06:12:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:12:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:12:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:12:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:12:46] 2.9.2.0 941083 2115 65560 146767 0 56 29646462 36864001 0 130560 0 1672061 99.992 520376 36778 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 06:12:46] CVMFS is ok
[2025-06-04 06:12:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:12:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:12:46] Further information can be found at the LHC@home message board.
[2025-06-04 06:12:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:12:46] Checking for apptainer binary...
[2025-06-04 06:12:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:12:46] Running /usr/bin/apptainer --version
[2025-06-04 06:12:46] apptainer version 1.3.6-6.1
[2025-06-04 06:12:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:12:46] thA387a
[2025-06-04 06:12:46] apptainer works
[2025-06-04 06:12:46] Set ATHENA_PROC_NUMBER=3
[2025-06-04 06:12:46] Set ATHENA_CORE_NUMBER=3
[2025-06-04 06:12:46] Starting ATLAS job with PandaID=6677784729
[2025-06-04 06:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:37:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:37:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 07:37:08]  is_altstaged=None
[2025-06-04 07:37:08]  is_tar=False
[2025-06-04 07:37:08]  lfn=log.45006595._039333.job.log.tgz.1
[2025-06-04 07:37:08]  mtime=0
[2025-06-04 07:37:08]  protocol_id=None
[2025-06-04 07:37:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:37:08]  replicas=None
[2025-06-04 07:37:08]  scope=mc23_13p6TeV
[2025-06-04 07:37:08]  status=None
[2025-06-04 07:37:08]  status_code=0
[2025-06-04 07:37:08]  storage_token=
[2025-06-04 07:37:08]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677784729/log.45006595._039333.job.log.tgz.1
[2025-06-04 07:37:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/06/log.45006595._039333.job.log.tgz.1
[2025-06-04 07:37:08]  workdir=None
[2025-06-04 07:37:08] ]
[2025-06-04 07:37:08] 2025-06-04 05:36:38,209 | INFO     | transferring file log.45006595._039333.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677784729/log.45006595._039333.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 07:37:08] 2025-06-04 05:36:38,209 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677784729/log.45006595._039333.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0393
[2025-06-04 07:37:08] 2025-06-04 05:36:38,222 | INFO     | adding to output.list: log.45006595._039333.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/06/log.45006595._039333.job.log.tg
[2025-06-04 07:37:08] 2025-06-04 05:36:38,222 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:37:08] 2025-06-04 05:36:38,222 | INFO     | summary of transferred files:
[2025-06-04 07:37:08] 2025-06-04 05:36:38,222 | INFO     |  -- lfn=log.45006595._039333.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:37:08] 2025-06-04 05:36:38,222 | INFO     | stage-out finished correctly
[2025-06-04 07:37:08] 2025-06-04 05:36:39,320 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:37:08] 2025-06-04 05:36:40,581 | INFO     | monitor loop #388: job 0:6677784729 is in state 'finished'
[2025-06-04 07:37:08] 2025-06-04 05:36:40,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:37:08] 2025-06-04 05:36:41,519 | INFO     | job 6677784729 has state=finished
[2025-06-04 07:37:08] 2025-06-04 05:36:41,520 | INFO     | preparing for final server update for job 6677784729 in state='finished'
[2025-06-04 07:37:08] 2025-06-04 05:36:42,165 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 07:37:08] 2025-06-04 05:36:42,165 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:37:08] 2025-06-04 05:36:42,166 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:37:08] 2025-06-04 05:36:42,166 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:37:08] 2025-06-04 05:36:42,166 | INFO     | job 6677784729 has finished - writing final server update
[2025-06-04 07:37:08] 2025-06-04 05:36:42,166 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:37:08] 2025-06-04 05:36:42,167 | INFO     | executing command: lscpu
[2025-06-04 07:37:08] 2025-06-04 05:36:42,180 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:37:08] 2025-06-04 05:36:43,085 | INFO     | monitor loop #389: job 0:6677784729 is in state 'finished'
[2025-06-04 07:37:08] 2025-06-04 05:36:43,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:37:08] 2025-06-04 05:36:45,588 | INFO     | monitor loop #390: job 0:6677784729 is in state 'finished'
[2025-06-04 07:37:08] 2025-06-04 05:36:45,588 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,459 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 07:37:08] 2025-06-04 05:36:47,459 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677784729/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,459 | INFO     | extracted standard info from prmon json
[2025-06-04 07:37:08] 2025-06-04 05:36:47,460 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:37:08] 2025-06-04 05:36:47,460 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:37:08] 2025-06-04 05:36:47,460 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:37:08] 2025-06-04 05:36:47,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:37:08] 2025-06-04 05:36:47,460 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | sum of square deviations: 130793150.0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | sum of deviations: -11570886504.0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | mean x: 1749012965.0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | mean y: 2455592.0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | -- intersect: 154732504620.09912
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | intersect: 154732504620.09912
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | chi2: 0.05748635442133615
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | -- intersect: 154732504620.09912
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | current memory leak: -88.47 B/s (using 75 data points, chi2=0.06)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | ..............................
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . Timing measurements:
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . get job = 0 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . initial setup = 1 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . payload setup = 6 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . stage-in = 0 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . payload execution = 4993 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . stage-out = 0 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,461 | INFO     | . log creation = 0 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,462 | INFO     | ..............................
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | 
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | job summary report
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | --------------------------------------------------
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | PanDA job id: 6677784729
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | task id: 45006595
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | errors: (none)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | pilot state: finished 
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | transexitcode: 0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,494 | INFO     | exeerrorcode: 0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | exeerrordiag: 
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | exitcode: 0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | exitmsg: OK
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | cpuconsumptiontime: 14341 s
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | nevents: 400
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | neventsw: 0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | pid: 1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | pgrp: 1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | corecount: 3
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | event service: False
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | sizes: {0: 2405016, 1: 2405215, 6: 2405421, 11: 2405449, 5003: 2431701, 5005: 2440648, 5006: 2440832, 5014: 2441002}
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | --------------------------------------------------
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | 
[2025-06-04 07:37:08] 2025-06-04 05:36:47,495 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | job 6677784729 has completed (purged errors)
[2025-06-04 07:37:08] 2025-06-04 05:36:47,508 | INFO     | overall cleanup function is called
[2025-06-04 07:37:08] 2025-06-04 05:36:48,509 | INFO     | --- collectZombieJob: --- 10, [1574603]
[2025-06-04 07:37:08] 2025-06-04 05:36:48,510 | INFO     | zombie collector waiting for pid 1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:48,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:37:08] 2025-06-04 05:36:48,510 | INFO     | collected zombie processes
[2025-06-04 07:37:08] 2025-06-04 05:36:48,510 | INFO     | will attempt to kill all subprocesses of pid=1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:48,553 | INFO     | process IDs to be killed: [1574603] (in reverse order)
[2025-06-04 07:37:08] 2025-06-04 05:36:48,579 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:37:08] 2025-06-04 05:36:48,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:37:08] 2025-06-04 05:36:48,581 | INFO     | did not find any defunct processes belonging to 1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | did not find any defunct processes belonging to 1574603
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | ready for new job
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | **************************************
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | **************************************
[2025-06-04 07:37:08] 2025-06-04 05:36:48,582 | INFO     | 
[2025-06-04 07:37:08] 2025-06-04 05:36:48,583 | INFO     | architecture information:
[2025-06-04 07:37:08] 2025-06-04 05:36:48,583 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:37:08] 2025-06-04 05:36:48,593 | INFO     | cat /etc/os-release:
[2025-06-04 07:37:08] NAME="CentOS Linux"
[2025-06-04 07:37:08] VERSION="7 (Core)"
[2025-06-04 07:37:08] ID="centos"
[2025-06-04 07:37:08] ID_LIKE="rhel fedora"
[2025-06-04 07:37:08] VERSION_ID="7"
[2025-06-04 07:37:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:37:08] ANSI_COLOR="0;31"
[2025-06-04 07:37:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:37:08] HOME_URL="https://www.centos.org/"
[2025-06-04 07:37:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:37:08] 
[2025-06-04 07:37:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:37:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:37:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:37:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:37:08] 
[2025-06-04 07:37:08] 2025-06-04 05:36:48,593 | INFO     | **************************************
[2025-06-04 07:37:08] 2025-06-04 05:36:49,097 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 07:37:08] 2025-06-04 05:36:49,110 | INFO     | sufficient remaining disk space (827658862592 B)
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | INFO     | update_server=False
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | INFO     | aborting loop
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:37:08] 2025-06-04 05:36:49,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:37:08] 2025-06-04 05:36:49,340 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:37:08] 2025-06-04 05:36:49,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:37:08] 2025-06-04 05:36:49,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:37:08] 2025-06-04 05:36:49,453 | INFO     | all job control threads have been joined
[2025-06-04 07:37:08] 2025-06-04 05:36:49,619 | INFO     | all payload control threads have been joined
[2025-06-04 07:37:08] 2025-06-04 05:36:49,841 | INFO     | all data control threads have been joined
[2025-06-04 07:37:08] 2025-06-04 05:36:49,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:37:08] 2025-06-04 05:36:50,117 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,117 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,118 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,277 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,318 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,458 | INFO     | [job] control thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,626 | INFO     | [payload] control thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,847 | INFO     | [data] control thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,861 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:50,992 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:51,117 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:51,193 | INFO     | [job] validate thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:51,227 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:51,435 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:36:53,870 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:37:00,047 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:37:08] 2025-06-04 05:37:01,053 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:37:08] 2025-06-04 05:37:02,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140141567121216)>', '<ExcThread(monitor, started 140141041522432)>']
[2025-06-04 07:37:08] 2025-06-04 05:37:03,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:37:08] 2025-06-04 05:37:03,413 | INFO     | [monitor] control thread has ended
[2025-06-04 07:37:08] 2025-06-04 05:37:07,935 | INFO     | all workflow threads have been joined
[2025-06-04 07:37:08] 2025-06-04 05:37:07,936 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:37:08] 2025-06-04 05:37:07,937 | INFO     | traces error code: 0
[2025-06-04 07:37:08] 2025-06-04 05:37:07,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:37:08] 2025-06-04 05:37:07,987 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:37:08] 2025-06-04 05:37:07,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:37:08] 2025-06-04 05:37:07,993 [wrapper] pilotpid: 1568117
[2025-06-04 07:37:08] 2025-06-04 05:37:07,996 [wrapper] Pilot exit status: 0
[2025-06-04 07:37:08] 2025-06-04 05:37:08,003 [wrapper] pandaids: 6677784729
[2025-06-04 07:37:08] 2025-06-04 05:37:08,020 [wrapper] cleanup supervisor_pilot 1587048 1568118
[2025-06-04 07:37:08] 2025-06-04 05:37:08,023 [wrapper] Test setup, not cleaning
[2025-06-04 07:37:08] 2025-06-04 05:37:08,026 [wrapper] apfmon messages muted
[2025-06-04 07:37:08] 2025-06-04 05:37:08,028 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:37:08] 2025-06-04 05:37:08,031 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:37:08]  *** Error codes and diagnostics ***
[2025-06-04 07:37:08]     "exeErrorCode": 0,
[2025-06-04 07:37:08]     "exeErrorDiag": "",
[2025-06-04 07:37:08]     "pilotErrorCode": 0,
[2025-06-04 07:37:08]     "pilotErrorDiag": "",
[2025-06-04 07:37:08]  *** Listing of results directory ***
[2025-06-04 07:37:08] total 392228
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 07:37:08] -rwx------ 1 boinc boinc     37140 Jun  3 18:51 runpilot2-wrapper.sh
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc      5111 Jun  3 18:51 queuedata.json
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc       100 Jun  4 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:37:08] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 06:12 run_atlas
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc       105 Jun  4 06:12 job.xml
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc 214900673 Jun  4 06:12 EVNT.45006593._001577.pool.root.1
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc      6680 Jun  4 06:12 init_data.xml
[2025-06-04 07:37:08] drwxrwx--x 2 boinc boinc      4096 Jun  4 06:12 shared
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc    508875 Jun  4 06:12 input.tar.gz
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc     15093 Jun  4 06:12 start_atlas.sh
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc         0 Jun  4 06:12 boinc_lockfile
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc      2525 Jun  4 06:12 pandaJob.out
[2025-06-04 07:37:08] -rw------- 1 boinc boinc    986077 Jun  4 06:12 agis_schedconf.cvmfs.json
[2025-06-04 07:37:08] -rw------- 1 boinc boinc   1603667 Jun  4 06:12 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:37:08] drwx------ 4 boinc boinc      4096 Jun  4 06:12 pilot3
[2025-06-04 07:37:08] -rw------- 1 boinc boinc 181448741 Jun  4 07:36 HITS.45006595._039333.pool.root.1
[2025-06-04 07:37:08] -rw------- 1 boinc boinc        95 Jun  4 07:36 pilot_heartbeat.json
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc       529 Jun  4 07:36 boinc_task_state.xml
[2025-06-04 07:37:08] -rw------- 1 boinc boinc      1018 Jun  4 07:36 memory_monitor_summary.json
[2025-06-04 07:37:08] -rw------- 1 boinc boinc    241826 Jun  4 07:36 log.45006595._039333.job.log.tgz.1
[2025-06-04 07:37:08] -rw------- 1 boinc boinc      7656 Jun  4 07:36 heartbeat.json
[2025-06-04 07:37:08] -rw------- 1 boinc boinc      4429 Jun  4 07:37 pilotlog.txt
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc      8192 Jun  4 07:37 boinc_mmap_file
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc        27 Jun  4 07:37 wrapper_checkpoint.txt
[2025-06-04 07:37:08] -rw------- 1 boinc boinc    487253 Jun  4 07:37 log.45006595._039333.job.log.1
[2025-06-04 07:37:08] -rw------- 1 boinc boinc       357 Jun  4 07:37 output.list
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc       620 Jun  4 07:37 runtime_log
[2025-06-04 07:37:08] -rw------- 1 boinc boinc    747520 Jun  4 07:37 result.tar.gz
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc      8738 Jun  4 07:37 runtime_log.err
[2025-06-04 07:37:08] -rw------- 1 boinc boinc       659 Jun  4 07:37 DtrLDmE2jg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm89kKDmLOcxwm.diag
[2025-06-04 07:37:08] -rw-r--r-- 1 boinc boinc     21325 Jun  4 07:37 stderr.txt
[2025-06-04 07:37:08] HITS file was successfully produced:
[2025-06-04 07:37:08] -rw------- 1 boinc boinc 181448741 Jun  4 07:36 shared/HITS.pool.root.1
[2025-06-04 07:37:08]  *** Contents of shared directory: ***
[2025-06-04 07:37:08] total 388316
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc 214900673 Jun  4 06:12 ATLAS.root_0
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc    508875 Jun  4 06:12 input.tar.gz
[2025-06-04 07:37:08] -rw-r--r-- 2 boinc boinc     15093 Jun  4 06:12 start_atlas.sh
[2025-06-04 07:37:08] -rw------- 1 boinc boinc 181448741 Jun  4 07:36 HITS.pool.root.1
[2025-06-04 07:37:08] -rw------- 1 boinc boinc    747520 Jun  4 07:37 result.tar.gz
07:37:09 (1564479): run_atlas exited; CPU time 14366.625313
07:37:09 (1564479): called boinc_finish(0)

</stderr_txt>
]]>

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