Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:53 (3967): wrapper (7.7.26015): starting
05:32:53 (3967): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:32:53] Arguments: --nthreads 8
[2025-06-04 05:32:53] Threads: 8
[2025-06-04 05:32:53] Checking for CVMFS
[2025-06-04 05:32:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:32:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:32:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:32:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:32:55] 2.11.2.0 2200 32670 90776 146766 1 16 15881142 25165824 2745 130560 0 17379025 99.749 21150556 2205 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 05:32:55] CVMFS is ok
[2025-06-04 05:32:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:32:55] Checking for apptainer binary...
[2025-06-04 05:32:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:32:55] Running /usr/bin/apptainer --version
[2025-06-04 05:32:55] apptainer version 1.3.2-1.el7
[2025-06-04 05:32:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:06:12] cg-vwn296.simple-grid.lan
[2025-06-04 06:06:12] apptainer works
[2025-06-04 06:06:12] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:06:12] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:06:12] Starting ATLAS job with PandaID=6677785120
[2025-06-04 06:06:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:02:13]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:02:13] 2025-06-04 08:01:09,392 | INFO     | extracted standard info from prmon json
[2025-06-04 10:02:13] 2025-06-04 08:01:09,393 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:02:13] 2025-06-04 08:01:09,393 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:02:13] 2025-06-04 08:01:09,393 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:02:13] 2025-06-04 08:01:09,393 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:02:13] 2025-06-04 08:01:09,399 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:02:13] 2025-06-04 08:01:09,400 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,402 | INFO     | sum of deviations: 93775015800.99998
[2025-06-04 10:02:13] 2025-06-04 08:01:09,402 | INFO     | mean x: 1749017307.5
[2025-06-04 10:02:13] 2025-06-04 08:01:09,402 | INFO     | mean y: 2432576.0545454547
[2025-06-04 10:02:13] 2025-06-04 08:01:09,402 | INFO     | -- intersect: -49673240443.906555
[2025-06-04 10:02:13] 2025-06-04 08:01:09,402 | INFO     | intersect: -49673240443.906555
[2025-06-04 10:02:13] 2025-06-04 08:01:09,403 | INFO     | chi2: 6.85235315838954
[2025-06-04 10:02:13] 2025-06-04 08:01:09,403 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,405 | INFO     | sum of deviations: 91606418465.00002
[2025-06-04 10:02:13] 2025-06-04 08:01:09,405 | INFO     | mean x: 1749017155.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,405 | INFO     | mean y: 2431072.8604651163
[2025-06-04 10:02:13] 2025-06-04 08:01:09,406 | INFO     | -- intersect: -51989454088.182236
[2025-06-04 10:02:13] 2025-06-04 08:01:09,406 | INFO     | intersect: -51989454088.182236
[2025-06-04 10:02:13] 2025-06-04 08:01:09,406 | INFO     | chi2: 6.86726240364396
[2025-06-04 10:02:13] 2025-06-04 08:01:09,406 | INFO     | current chi2=6.86726240364396 (change=-0.21757847136303501 %)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,406 | INFO     | right removable region: 214
[2025-06-04 10:02:13] 2025-06-04 08:01:09,407 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | sum of deviations: 16572189030.000006
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | mean x: 1749017460.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | mean y: 2486049.0325581394
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | -- intersect: -9403181300.536177
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | intersect: -9403181300.536177
[2025-06-04 10:02:13] 2025-06-04 08:01:09,409 | INFO     | chi2: 1.7219049833795688
[2025-06-04 10:02:13] 2025-06-04 08:01:09,410 | INFO     | current chi2=1.7219049833795688 (change=74.87133334230754 %)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,410 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 10:02:13] 2025-06-04 08:01:09,412 | INFO     | sum of deviations: -22616524456.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,412 | INFO     | mean x: 1749017612.5
[2025-06-04 10:02:13] 2025-06-04 08:01:09,412 | INFO     | mean y: 2514320.723809524
[2025-06-04 10:02:13] 2025-06-04 08:01:09,412 | INFO     | -- intersect: 13777577175.351213
[2025-06-04 10:02:13] 2025-06-04 08:01:09,412 | INFO     | intersect: 13777577175.351213
[2025-06-04 10:02:13] 2025-06-04 08:01:09,413 | INFO     | chi2: 0.1755222114601314
[2025-06-04 10:02:13] 2025-06-04 08:01:09,413 | INFO     | current chi2=0.1755222114601314 (change=89.8065100482121 %)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,413 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,415 | INFO     | sum of deviations: -23598194588.999992
[2025-06-04 10:02:13] 2025-06-04 08:01:09,415 | INFO     | mean x: 1749017765.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,415 | INFO     | mean y: 2515012.5707317074
[2025-06-04 10:02:13] 2025-06-04 08:01:09,415 | INFO     | -- intersect: 15453043027.329517
[2025-06-04 10:02:13] 2025-06-04 08:01:09,415 | INFO     | intersect: 15453043027.329517
[2025-06-04 10:02:13] 2025-06-04 08:01:09,416 | INFO     | chi2: 0.14570310890636823
[2025-06-04 10:02:13] 2025-06-04 08:01:09,416 | INFO     | current chi2=0.14570310890636823 (change=16.988791507185606 %)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,416 | INFO     | left removable region: 30
[2025-06-04 10:02:13] 2025-06-04 08:01:09,416 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,418 | INFO     | sum of deviations: -1540010331.0000005
[2025-06-04 10:02:13] 2025-06-04 08:01:09,418 | INFO     | mean x: 1749018039.5
[2025-06-04 10:02:13] 2025-06-04 08:01:09,418 | INFO     | mean y: 2496322.815217391
[2025-06-04 10:02:13] 2025-06-04 08:01:09,418 | INFO     | -- intersect: 1396933194.9238112
[2025-06-04 10:02:13] 2025-06-04 08:01:09,418 | INFO     | intersect: 1396933194.9238112
[2025-06-04 10:02:13] 2025-06-04 08:01:09,419 | INFO     | chi2: 0.039569529898943474
[2025-06-04 10:02:13] 2025-06-04 08:01:09,419 | INFO     | -- intersect: 1396933194.9238112
[2025-06-04 10:02:13] 2025-06-04 08:01:09,419 | INFO     | current memory leak: -0.80 B/s (using 184 data points, chi2=0.04)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | ..............................
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | . Timing measurements:
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | . get job = 0 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | . initial setup = 14 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | . payload setup = 144 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,420 | INFO     | . stage-in = 0 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,421 | INFO     | . payload execution = 13568 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,421 | INFO     | . stage-out = 2 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,421 | INFO     | . log creation = 0 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,421 | INFO     | ..............................
[2025-06-04 10:02:13] 2025-06-04 08:01:09,552 | INFO     | 
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | job summary report
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | --------------------------------------------------
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | PanDA job id: 6677785120
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | task id: 45006595
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | errors: (none)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:02:13] 2025-06-04 08:01:09,553 | INFO     | pilot state: finished 
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | transexitcode: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | exeerrorcode: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | exeerrordiag: 
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | exitcode: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | exitmsg: OK
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | cpuconsumptiontime: 49294 s
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | nevents: 400
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | neventsw: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | pid: 4556
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | pgrp: 4556
[2025-06-04 10:02:13] 2025-06-04 08:01:09,554 | INFO     | corecount: 8
[2025-06-04 10:02:13] 2025-06-04 08:01:09,555 | INFO     | event service: False
[2025-06-04 10:02:13] 2025-06-04 08:01:09,555 | INFO     | sizes: {0: 2404958, 1: 2405213, 12: 2405213, 23: 2405241, 34: 2405269, 44: 2405297, 55: 2405453, 66: 2405481, 77: 2405509, 82: 2405771, 87: 2405827, 13715: 2435710
[2025-06-04 10:02:13] 2025-06-04 08:01:09,555 | INFO     | --------------------------------------------------
[2025-06-04 10:02:13] 2025-06-04 08:01:09,555 | INFO     | 
[2025-06-04 10:02:13] 2025-06-04 08:01:09,555 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-06-04 10:02:13] 2025-06-04 08:01:09,589 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | job 6677785120 has completed (purged errors)
[2025-06-04 10:02:13] 2025-06-04 08:01:09,592 | INFO     | overall cleanup function is called
[2025-06-04 10:02:13] 2025-06-04 08:01:10,602 | INFO     | --- collectZombieJob: --- 10, [4556]
[2025-06-04 10:02:13] 2025-06-04 08:01:10,603 | INFO     | zombie collector waiting for pid 4556
[2025-06-04 10:02:13] 2025-06-04 08:01:10,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:02:13] 2025-06-04 08:01:10,603 | INFO     | collected zombie processes
[2025-06-04 10:02:13] 2025-06-04 08:01:10,603 | INFO     | will attempt to kill all subprocesses of pid=4556
[2025-06-04 10:02:13] 2025-06-04 08:01:10,767 | INFO     | process IDs to be killed: [4556] (in reverse order)
[2025-06-04 10:02:13] 2025-06-04 08:01:10,853 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:02:13] 2025-06-04 08:01:10,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:02:13] 2025-06-04 08:01:10,858 | INFO     | did not find any defunct processes belonging to 4556
[2025-06-04 10:02:13] 2025-06-04 08:01:10,861 | INFO     | did not find any defunct processes belonging to 4556
[2025-06-04 10:02:13] 2025-06-04 08:01:10,862 | INFO     | ready for new job
[2025-06-04 10:02:13] 2025-06-04 08:01:10,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:02:13] 2025-06-04 08:01:10,864 | INFO     | **************************************
[2025-06-04 10:02:13] 2025-06-04 08:01:10,864 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:02:13] 2025-06-04 08:01:10,865 | INFO     | **************************************
[2025-06-04 10:02:13] 2025-06-04 08:01:10,865 | INFO     | 
[2025-06-04 10:02:13] 2025-06-04 08:01:10,865 | INFO     | pilot is running in a VM
[2025-06-04 10:02:13] 2025-06-04 08:01:10,865 | INFO     | architecture information:
[2025-06-04 10:02:13] 2025-06-04 08:01:10,867 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:02:13] 2025-06-04 08:01:10,944 | INFO     | cat /etc/os-release:
[2025-06-04 10:02:13] NAME="CentOS Linux"
[2025-06-04 10:02:13] VERSION="7 (Core)"
[2025-06-04 10:02:13] ID="centos"
[2025-06-04 10:02:13] ID_LIKE="rhel fedora"
[2025-06-04 10:02:13] VERSION_ID="7"
[2025-06-04 10:02:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:02:13] ANSI_COLOR="0;31"
[2025-06-04 10:02:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:02:13] HOME_URL="https://www.centos.org/"
[2025-06-04 10:02:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:02:13] 
[2025-06-04 10:02:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:02:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:02:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:02:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:02:13] 
[2025-06-04 10:02:13] 2025-06-04 08:01:10,945 | INFO     | **************************************
[2025-06-04 10:02:13] 2025-06-04 08:01:11,449 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-06-04 10:02:13] 2025-06-04 08:01:11,509 | INFO     | sufficient remaining disk space (497302896640 B)
[2025-06-04 10:02:13] 2025-06-04 08:01:11,509 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:02:13] 2025-06-04 08:01:11,510 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:02:13] 2025-06-04 08:01:11,510 | INFO     | update_server=False
[2025-06-04 10:02:13] 2025-06-04 08:01:11,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:02:13] 2025-06-04 08:01:11,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:02:13] 2025-06-04 08:01:11,511 | INFO     | aborting loop
[2025-06-04 10:02:13] 2025-06-04 08:01:11,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:02:13] 2025-06-04 08:01:11,514 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:02:13] 2025-06-04 08:01:11,514 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:02:13] 2025-06-04 08:01:11,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:02:13] 2025-06-04 08:01:11,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:02:13] 2025-06-04 08:01:11,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:02:13] 2025-06-04 08:01:12,204 | INFO     | all data control threads have been joined
[2025-06-04 10:02:13] 2025-06-04 08:01:12,399 | INFO     | all payload control threads have been joined
[2025-06-04 10:02:13] 2025-06-04 08:01:12,515 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:12,517 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:12,524 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:12,731 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:12,903 | INFO     | all job control threads have been joined
[2025-06-04 10:02:13] 2025-06-04 08:01:12,952 | INFO     | [job] validate thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,165 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,211 | INFO     | [data] control thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:02:13] 2025-06-04 08:01:13,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,307 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,310 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,406 | INFO     | [payload] control thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,521 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,753 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,909 | INFO     | [job] control thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:13,951 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:17,221 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:02:13] 2025-06-04 08:01:17,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139984802293568)>', '<ExcThread(monitor, started 139984350717696)>']
[2025-06-04 10:02:13] 2025-06-04 08:01:18,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:02:13] 2025-06-04 08:01:18,555 | INFO     | [monitor] control thread has ended
[2025-06-04 10:02:13] 2025-06-04 08:01:22,670 | INFO     | all workflow threads have been joined
[2025-06-04 10:02:13] 2025-06-04 08:01:22,671 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:02:13] 2025-06-04 08:01:22,671 | INFO     | traces error code: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:22,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:02:13] 2025-06-04 08:01:23,009 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:02:13] 2025-06-04 08:01:23,131 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:02:13] 2025-06-04 08:01:23,221 [wrapper] pilotpid: 26362
[2025-06-04 10:02:13] 2025-06-04 08:01:23,291 [wrapper] Pilot exit status: 0
[2025-06-04 10:02:13] 2025-06-04 08:01:23,801 [wrapper] pandaids: 6677785120
[2025-06-04 10:02:13] 2025-06-04 08:01:24,747 [wrapper] cleanup supervisor_pilot 14042 26363
[2025-06-04 10:02:13] 2025-06-04 08:01:24,866 [wrapper] Test setup, not cleaning
[2025-06-04 10:02:13] 2025-06-04 08:01:24,941 [wrapper] apfmon messages muted
[2025-06-04 10:02:13] 2025-06-04 08:01:25,036 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:02:13] 2025-06-04 08:01:25,162 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:02:13]  *** Error codes and diagnostics ***
[2025-06-04 10:02:13]     "exeErrorCode": 0,
[2025-06-04 10:02:13]     "exeErrorDiag": "",
[2025-06-04 10:02:13]     "pilotErrorCode": 0,
[2025-06-04 10:02:13]     "pilotErrorDiag": "",
[2025-06-04 10:02:13]  *** Listing of results directory ***
[2025-06-04 10:02:13] total 390120
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:50 queuedata.json
[2025-06-04 10:02:13] -rwx------. 1 boinc boinc     37140 Jun  3 18:50 runpilot2-wrapper.sh
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc       100 Jun  4 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:02:13] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 05:32 run_atlas
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc       105 Jun  4 05:32 job.xml
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc 215473851 Jun  4 05:32 EVNT.45006593._001583.pool.root.1
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:32 start_atlas.sh
[2025-06-04 10:02:13] drwxrwx--x. 2 boinc boinc        68 Jun  4 05:32 shared
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc    508878 Jun  4 05:32 input.tar.gz
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc      6392 Jun  4 05:32 init_data.xml
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc         0 Jun  4 05:32 boinc_lockfile
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:06 pandaJob.out
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc    986077 Jun  4 06:09 agis_schedconf.cvmfs.json
[2025-06-04 10:02:13] drwx------. 4 boinc boinc      4096 Jun  4 06:09 pilot3
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc 177052101 Jun  4 10:00 HITS.45006595._039472.pool.root.1
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:00 boinc_task_state.xml
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc        95 Jun  4 10:00 pilot_heartbeat.json
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc      1015 Jun  4 10:00 memory_monitor_summary.json
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc   1603667 Jun  4 10:00 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc    383582 Jun  4 10:00 log.45006595._039472.job.log.tgz.1
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc      7691 Jun  4 10:01 heartbeat.json
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc      4540 Jun  4 10:01 pilotlog.txt
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc   1185832 Jun  4 10:01 log.45006595._039472.job.log.1
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc       357 Jun  4 10:01 output.list
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:01 runtime_log
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc   1587200 Jun  4 10:01 result.tar.gz
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc      8673 Jun  4 10:01 runtime_log.err
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc       657 Jun  4 10:01 jm9LDmG1jg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmuJZKDmbERWXm.diag
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:02 boinc_mmap_file
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:02 wrapper_checkpoint.txt
[2025-06-04 10:02:13] -rw-r--r--. 1 boinc boinc     20520 Jun  4 10:02 stderr.txt
[2025-06-04 10:02:13] HITS file was successfully produced:
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc 177052101 Jun  4 10:00 shared/HITS.pool.root.1
[2025-06-04 10:02:13]  *** Contents of shared directory: ***
[2025-06-04 10:02:13] total 385396
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc 215473851 Jun  4 05:32 ATLAS.root_0
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:32 start_atlas.sh
[2025-06-04 10:02:13] -rw-r--r--. 2 boinc boinc    508878 Jun  4 05:32 input.tar.gz
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc 177052101 Jun  4 10:00 HITS.pool.root.1
[2025-06-04 10:02:13] -rw-------. 1 boinc boinc   1587200 Jun  4 10:01 result.tar.gz
10:02:15 (3967): run_atlas exited; CPU time 49487.701102
10:02:15 (3967): called boinc_finish(0)

</stderr_txt>
]]>

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