Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:06 (22937): wrapper (7.7.26015): starting
06:53:06 (22937): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:53:06] Arguments: --nthreads 8
[2025-06-04 06:53:06] Threads: 8
[2025-06-04 06:53:06] Checking for CVMFS
[2025-06-04 06:53:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:53:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:53:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:53:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:53:09] 2.11.2.0 23942 32749 100344 146768 1 69 24548651 25165825 3906 130560 0 17971836 99.847 17386705 1849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:53:09] CVMFS is ok
[2025-06-04 06:53:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:53:09] Checking for apptainer binary...
[2025-06-04 06:53:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:53:09] Running /usr/bin/apptainer --version
[2025-06-04 06:53:09] apptainer version 1.3.2-1.el7
[2025-06-04 06:53:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:03:45] cg-vwn380.simple-grid.lan
[2025-06-04 07:03:45] apptainer works
[2025-06-04 07:03:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:03:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:03:45] Starting ATLAS job with PandaID=6677783187
[2025-06-04 07:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:07:41]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:07:41] 2025-06-04 09:02:27,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:07:41] 2025-06-04 09:02:27,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:07:41] 2025-06-04 09:02:27,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:07:41] 2025-06-04 09:02:27,377 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:07:41] 2025-06-04 09:02:27,377 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 11:07:41] 2025-06-04 09:02:27,379 | INFO     | sum of deviations: 16935642157.999987
[2025-06-04 11:07:41] 2025-06-04 09:02:27,380 | INFO     | mean x: 1749020854.5
[2025-06-04 11:07:41] 2025-06-04 09:02:27,380 | INFO     | mean y: 2477832.6306306305
[2025-06-04 11:07:41] 2025-06-04 09:02:27,380 | INFO     | -- intersect: -8728605259.645737
[2025-06-04 11:07:41] 2025-06-04 09:02:27,380 | INFO     | intersect: -8728605259.645737
[2025-06-04 11:07:41] 2025-06-04 09:02:27,380 | INFO     | chi2: 5.757894146299627
[2025-06-04 11:07:41] 2025-06-04 09:02:27,381 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,382 | INFO     | sum of deviations: 31594728143.000023
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | mean x: 1749020702.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | mean y: 2487625.8479262674
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | -- intersect: -17438102276.34464
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | intersect: -17438102276.34464
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | chi2: 5.034357556816684
[2025-06-04 11:07:41] 2025-06-04 09:02:27,383 | INFO     | current chi2=5.034357556816684 (change=12.5659932450813 %)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,384 | INFO     | right removable region: 216
[2025-06-04 11:07:41] 2025-06-04 09:02:27,384 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,392 | INFO     | sum of deviations: -56553322223.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,392 | INFO     | mean x: 1749021007.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,392 | INFO     | mean y: 2527752.0967741935
[2025-06-04 11:07:41] 2025-06-04 09:02:27,393 | INFO     | -- intersect: 31220503992.690964
[2025-06-04 11:07:41] 2025-06-04 09:02:27,393 | INFO     | intersect: 31220503992.690964
[2025-06-04 11:07:41] 2025-06-04 09:02:27,393 | INFO     | chi2: 1.450814654226518
[2025-06-04 11:07:41] 2025-06-04 09:02:27,393 | INFO     | current chi2=1.450814654226518 (change=74.80303358548369 %)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,394 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,395 | INFO     | sum of deviations: -74084065313.99998
[2025-06-04 11:07:41] 2025-06-04 09:02:27,395 | INFO     | mean x: 1749021159.5
[2025-06-04 11:07:41] 2025-06-04 09:02:27,396 | INFO     | mean y: 2540119.820754717
[2025-06-04 11:07:41] 2025-06-04 09:02:27,396 | INFO     | -- intersect: 43860005161.4349
[2025-06-04 11:07:41] 2025-06-04 09:02:27,396 | INFO     | intersect: 43860005161.4349
[2025-06-04 11:07:41] 2025-06-04 09:02:27,396 | INFO     | chi2: 0.9966579753691237
[2025-06-04 11:07:41] 2025-06-04 09:02:27,396 | INFO     | current chi2=0.9966579753691237 (change=31.303562969559444 %)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,397 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,398 | INFO     | sum of deviations: -68588870005.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,399 | INFO     | mean x: 1749021312.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,399 | INFO     | mean y: 2536009.3188405796
[2025-06-04 11:07:41] 2025-06-04 09:02:27,399 | INFO     | -- intersect: 43620905254.30972
[2025-06-04 11:07:41] 2025-06-04 09:02:27,399 | INFO     | intersect: 43620905254.30972
[2025-06-04 11:07:41] 2025-06-04 09:02:27,399 | INFO     | chi2: 0.9959783214027769
[2025-06-04 11:07:41] 2025-06-04 09:02:27,400 | INFO     | current chi2=0.9959783214027769 (change=0.06819330032402746 %)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,400 | INFO     | left removable region: 30
[2025-06-04 11:07:41] 2025-06-04 09:02:27,400 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 11:07:41] 2025-06-04 09:02:27,401 | INFO     | sum of deviations: -33876332066.0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,402 | INFO     | mean x: 1749021586.5
[2025-06-04 11:07:41] 2025-06-04 09:02:27,402 | INFO     | mean y: 2531656.5268817204
[2025-06-04 11:07:41] 2025-06-04 09:02:27,402 | INFO     | -- intersect: 29697772211.88506
[2025-06-04 11:07:41] 2025-06-04 09:02:27,402 | INFO     | intersect: 29697772211.88506
[2025-06-04 11:07:41] 2025-06-04 09:02:27,402 | INFO     | chi2: 0.17602798156089844
[2025-06-04 11:07:41] 2025-06-04 09:02:27,403 | INFO     | -- intersect: 29697772211.88506
[2025-06-04 11:07:41] 2025-06-04 09:02:27,403 | INFO     | current memory leak: -16.98 B/s (using 186 data points, chi2=0.18)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | ..............................
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . Timing measurements:
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . get job = 0 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . initial setup = 5 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . payload setup = 156 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . stage-in = 0 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . payload execution = 13686 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,404 | INFO     | . stage-out = 3 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,405 | INFO     | . log creation = 1 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,405 | INFO     | ..............................
[2025-06-04 11:07:41] 2025-06-04 09:02:27,533 | INFO     | 
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | job summary report
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | --------------------------------------------------
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | PanDA job id: 6677783187
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | task id: 45006595
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | errors: (none)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:07:41] 2025-06-04 09:02:27,534 | INFO     | pilot state: finished 
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | transexitcode: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | exeerrorcode: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | exeerrordiag: 
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | exitcode: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | exitmsg: OK
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | cpuconsumptiontime: 49461 s
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | nevents: 400
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | neventsw: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | pid: 12923
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | pgrp: 12923
[2025-06-04 11:07:41] 2025-06-04 09:02:27,535 | INFO     | corecount: 8
[2025-06-04 11:07:41] 2025-06-04 09:02:27,536 | INFO     | event service: False
[2025-06-04 11:07:41] 2025-06-04 09:02:27,536 | INFO     | sizes: {0: 2404356, 1: 2405212, 2: 2405212, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 85: 2405798, 88: 2406106, 13
[2025-06-04 11:07:41] 2025-06-04 09:02:27,536 | INFO     | --------------------------------------------------
[2025-06-04 11:07:41] 2025-06-04 09:02:27,536 | INFO     | 
[2025-06-04 11:07:41] 2025-06-04 09:02:27,536 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 11:07:41] 2025-06-04 09:02:27,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:07:41] 2025-06-04 09:02:27,948 | INFO     | job 6677783187 has completed (purged errors)
[2025-06-04 11:07:41] 2025-06-04 09:02:27,948 | INFO     | overall cleanup function is called
[2025-06-04 11:07:41] 2025-06-04 09:02:28,957 | INFO     | --- collectZombieJob: --- 10, [12923]
[2025-06-04 11:07:41] 2025-06-04 09:02:28,957 | INFO     | zombie collector waiting for pid 12923
[2025-06-04 11:07:41] 2025-06-04 09:02:28,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:07:41] 2025-06-04 09:02:28,958 | INFO     | collected zombie processes
[2025-06-04 11:07:41] 2025-06-04 09:02:28,958 | INFO     | will attempt to kill all subprocesses of pid=12923
[2025-06-04 11:07:41] 2025-06-04 09:02:29,107 | INFO     | process IDs to be killed: [12923] (in reverse order)
[2025-06-04 11:07:41] 2025-06-04 09:02:29,867 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:07:41] 2025-06-04 09:02:29,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:07:41] 2025-06-04 09:02:29,870 | INFO     | did not find any defunct processes belonging to 12923
[2025-06-04 11:07:41] 2025-06-04 09:02:29,874 | INFO     | did not find any defunct processes belonging to 12923
[2025-06-04 11:07:41] 2025-06-04 09:02:29,874 | INFO     | ready for new job
[2025-06-04 11:07:41] 2025-06-04 09:02:29,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:07:41] 2025-06-04 09:02:29,877 | INFO     | **************************************
[2025-06-04 11:07:41] 2025-06-04 09:02:29,877 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:07:41] 2025-06-04 09:02:29,877 | INFO     | **************************************
[2025-06-04 11:07:41] 2025-06-04 09:02:29,877 | INFO     | 
[2025-06-04 11:07:41] 2025-06-04 09:02:29,878 | INFO     | pilot is running in a VM
[2025-06-04 11:07:41] 2025-06-04 09:02:29,878 | INFO     | architecture information:
[2025-06-04 11:07:41] 2025-06-04 09:02:29,894 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:07:41] 2025-06-04 09:02:30,280 | INFO     | cat /etc/os-release:
[2025-06-04 11:07:41] NAME="CentOS Linux"
[2025-06-04 11:07:41] VERSION="7 (Core)"
[2025-06-04 11:07:41] ID="centos"
[2025-06-04 11:07:41] ID_LIKE="rhel fedora"
[2025-06-04 11:07:41] VERSION_ID="7"
[2025-06-04 11:07:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:07:41] ANSI_COLOR="0;31"
[2025-06-04 11:07:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:07:41] HOME_URL="https://www.centos.org/"
[2025-06-04 11:07:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:07:41] 
[2025-06-04 11:07:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:07:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:07:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:07:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:07:41] 
[2025-06-04 11:07:41] 2025-06-04 09:02:30,280 | INFO     | **************************************
[2025-06-04 11:07:41] 2025-06-04 09:02:30,784 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 11:07:41] 2025-06-04 09:02:31,044 | INFO     | sufficient remaining disk space (496688431104 B)
[2025-06-04 11:07:41] 2025-06-04 09:02:31,044 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:07:41] 2025-06-04 09:02:31,045 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:07:41] 2025-06-04 09:02:31,045 | INFO     | update_server=False
[2025-06-04 11:07:41] 2025-06-04 09:02:31,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:07:41] 2025-06-04 09:02:31,099 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:07:41] 2025-06-04 09:02:31,099 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:07:41] 2025-06-04 09:02:31,100 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:07:41] 2025-06-04 09:02:31,100 | INFO     | will abort loop
[2025-06-04 11:07:41] 2025-06-04 09:02:31,349 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:07:41] 2025-06-04 09:02:31,585 | INFO     | all data control threads have been joined
[2025-06-04 11:07:41] 2025-06-04 09:02:31,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:07:41] 2025-06-04 09:02:31,797 | INFO     | all payload control threads have been joined
[2025-06-04 11:07:41] 2025-06-04 09:02:31,865 | INFO     | all job control threads have been joined
[2025-06-04 11:07:41] 2025-06-04 09:02:31,991 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:07:41] 2025-06-04 09:02:31,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:07:41] 2025-06-04 09:02:31,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:07:41] 2025-06-04 09:02:32,051 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,106 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,268 | INFO     | [job] validate thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,369 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,450 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:07:41] 2025-06-04 09:02:32,591 | INFO     | [data] control thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,750 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,803 | INFO     | [payload] control thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,871 | INFO     | [job] control thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:32,998 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:33,243 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:33,559 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:33,603 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:33,737 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:35,358 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:41,874 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:07:41] 2025-06-04 09:02:42,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:07:41] 2025-06-04 09:02:44,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140430180403008)>', '<ExcThread(monitor, started 140429500598016)>']
[2025-06-04 11:07:41] 2025-06-04 09:02:45,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:07:41] 2025-06-04 09:02:45,067 | INFO     | [monitor] control thread has ended
[2025-06-04 11:07:41] 2025-06-04 09:02:49,498 | INFO     | all workflow threads have been joined
[2025-06-04 11:07:41] 2025-06-04 09:02:49,498 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:07:41] 2025-06-04 09:02:49,499 | INFO     | traces error code: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:49,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:07:41] 2025-06-04 09:02:49,722 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:07:41] 2025-06-04 09:02:49,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:07:41] 2025-06-04 09:02:49,733 [wrapper] pilotpid: 4317
[2025-06-04 11:07:41] 2025-06-04 09:02:49,737 [wrapper] Pilot exit status: 0
[2025-06-04 11:07:41] 2025-06-04 09:02:49,783 [wrapper] pandaids: 6677783187
[2025-06-04 11:07:41] 2025-06-04 09:02:49,830 [wrapper] cleanup supervisor_pilot 10621 4318
[2025-06-04 11:07:41] 2025-06-04 09:02:49,903 [wrapper] Test setup, not cleaning
[2025-06-04 11:07:41] 2025-06-04 09:02:50,024 [wrapper] apfmon messages muted
[2025-06-04 11:07:41] 2025-06-04 09:02:50,155 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:07:41] 2025-06-04 09:02:50,236 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:07:41]  *** Error codes and diagnostics ***
[2025-06-04 11:07:41]     "exeErrorCode": 0,
[2025-06-04 11:07:41]     "exeErrorDiag": "",
[2025-06-04 11:07:41]     "pilotErrorCode": 0,
[2025-06-04 11:07:41]     "pilotErrorDiag": "",
[2025-06-04 11:07:41]  *** Listing of results directory ***
[2025-06-04 11:07:41] total 390752
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:45 queuedata.json
[2025-06-04 11:07:41] -rwx------. 1 boinc boinc     37140 Jun  3 18:47 runpilot2-wrapper.sh
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:07:41] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:53 run_atlas
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:53 job.xml
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc 216452213 Jun  4 06:53 EVNT.45006593._001570.pool.root.1
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:53 init_data.xml
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 11:07:41] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:53 shared
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc    508884 Jun  4 06:53 input.tar.gz
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:53 boinc_lockfile
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc      2525 Jun  4 07:03 pandaJob.out
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc    986745 Jun  4 07:07 agis_schedconf.cvmfs.json
[2025-06-04 11:07:41] drwx------. 4 boinc boinc      4096 Jun  4 07:07 pilot3
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc 176669989 Jun  4 10:59 HITS.45006595._039151.pool.root.1
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:59 boinc_task_state.xml
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc      1033 Jun  4 11:00 memory_monitor_summary.json
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc   1603667 Jun  4 11:00 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc    391612 Jun  4 11:00 log.45006595._039151.job.log.tgz.1
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc        95 Jun  4 11:01 pilot_heartbeat.json
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc      7698 Jun  4 11:02 heartbeat.json
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc      4674 Jun  4 11:02 pilotlog.txt
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc   1203568 Jun  4 11:02 log.45006595._039151.job.log.1
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc       357 Jun  4 11:02 output.list
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:02 runtime_log
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc   1617920 Jun  4 11:02 result.tar.gz
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc       657 Jun  4 11:02 8wVLDmKyjg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm8IZKDmKV6Kqn.diag
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc      8659 Jun  4 11:02 runtime_log.err
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:07 boinc_mmap_file
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:07 wrapper_checkpoint.txt
[2025-06-04 11:07:41] -rw-r--r--. 1 boinc boinc     20476 Jun  4 11:07 stderr.txt
[2025-06-04 11:07:41] HITS file was successfully produced:
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc 176669989 Jun  4 10:59 shared/HITS.pool.root.1
[2025-06-04 11:07:41]  *** Contents of shared directory: ***
[2025-06-04 11:07:41] total 386008
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc 216452213 Jun  4 06:53 ATLAS.root_0
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 11:07:41] -rw-r--r--. 2 boinc boinc    508884 Jun  4 06:53 input.tar.gz
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc 176669989 Jun  4 10:59 HITS.pool.root.1
[2025-06-04 11:07:41] -rw-------. 1 boinc boinc   1617920 Jun  4 11:02 result.tar.gz
11:07:43 (22937): run_atlas exited; CPU time 49658.487872
11:07:43 (22937): called boinc_finish(0)

</stderr_txt>
]]>

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