Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:27:43 (1073003): wrapper (7.7.26015): starting
18:27:43 (1073003): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 18:27:43] Arguments: --nthreads 4
[2025-06-06 18:27:43] Threads: 4
[2025-06-06 18:27:43] Checking for CVMFS
[2025-06-06 18:27:43] No cvmfs_config command found, will try listing directly
[2025-06-06 18:27:43] CVMFS is ok
[2025-06-06 18:27:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:27:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:27:43] Further information can be found at the LHC@home message board.
[2025-06-06 18:27:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:27:43] Checking for apptainer binary...
[2025-06-06 18:27:43] which: no apptainer in ((null))
[2025-06-06 18:27:43] apptainer is not installed, using version from CVMFS
[2025-06-06 18:27:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:27:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-06 18:27:43] apptainer works
[2025-06-06 18:27:43] Set ATHENA_PROC_NUMBER=4
[2025-06-06 18:27:43] Set ATHENA_CORE_NUMBER=4
[2025-06-06 18:27:43] Starting ATLAS job with PandaID=6677783063
[2025-06-06 18:27:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 19:47:46]  *** The last 200 lines of the pilot log: ***
[2025-06-06 19:47:46]  mtime=0
[2025-06-06 19:47:46]  protocol_id=None
[2025-06-06 19:47:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 19:47:46]  replicas=None
[2025-06-06 19:47:46]  scope=mc23_13p6TeV
[2025-06-06 19:47:46]  status=None
[2025-06-06 19:47:46]  status_code=0
[2025-06-06 19:47:46]  storage_token=
[2025-06-06 19:47:46]  surl=/scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677783063/log.45006595._039027.job.log.tgz.1
[2025-06-06 19:47:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/83/log.45006595._039027.job.log.tgz.1
[2025-06-06 19:47:46]  workdir=None
[2025-06-06 19:47:46] ]
[2025-06-06 19:47:46] 2025-06-06 17:47:19,309 | INFO     | transferring file log.45006595._039027.job.log.tgz.1 from /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677783063/log.45006595._039027.job.log.tgz.1 to /scratch/b
[2025-06-06 19:47:46] 2025-06-06 17:47:19,310 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677783063/log.45006595._039027.job.log.tgz.1 /scratch/boinc/var/slot36/slots/0/lo
[2025-06-06 19:47:46] 2025-06-06 17:47:19,323 | INFO     | adding to output.list: log.45006595._039027.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/83/log.45006595._039027.job.log.tg
[2025-06-06 19:47:46] 2025-06-06 17:47:19,323 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 19:47:46] 2025-06-06 17:47:19,323 | INFO     | summary of transferred files:
[2025-06-06 19:47:46] 2025-06-06 17:47:19,324 | INFO     |  -- lfn=log.45006595._039027.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 19:47:46] 2025-06-06 17:47:19,324 | INFO     | stage-out finished correctly
[2025-06-06 19:47:46] 2025-06-06 17:47:20,056 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 19:47:46] 2025-06-06 17:47:20,619 | INFO     | monitor loop #363: job 0:6677783063 is in state 'finished'
[2025-06-06 19:47:46] 2025-06-06 17:47:20,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:47:46] 2025-06-06 17:47:22,087 | INFO     | job 6677783063 has state=finished
[2025-06-06 19:47:46] 2025-06-06 17:47:22,087 | INFO     | preparing for final server update for job 6677783063 in state='finished'
[2025-06-06 19:47:46] 2025-06-06 17:47:22,087 | INFO     | this job has now completed (state=finished)
[2025-06-06 19:47:46] 2025-06-06 17:47:22,087 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 19:47:46] 2025-06-06 17:47:22,087 | INFO     | log transfer has been attempted: DONE
[2025-06-06 19:47:46] 2025-06-06 17:47:22,088 | INFO     | job 6677783063 has finished - writing final server update
[2025-06-06 19:47:46] 2025-06-06 17:47:22,088 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_410965/.job.ad'
[2025-06-06 19:47:46] 2025-06-06 17:47:22,088 | INFO     | total number of processed events: 400 (read)
[2025-06-06 19:47:46] 2025-06-06 17:47:22,090 | INFO     | executing command: lscpu
[2025-06-06 19:47:46] 2025-06-06 17:47:22,127 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 19:47:46] 2025-06-06 17:47:23,122 | INFO     | monitor loop #364: job 0:6677783063 is in state 'finished'
[2025-06-06 19:47:46] 2025-06-06 17:47:23,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:47:46] 2025-06-06 17:47:25,626 | INFO     | monitor loop #365: job 0:6677783063 is in state 'finished'
[2025-06-06 19:47:46] 2025-06-06 17:47:25,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,250 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 19:47:46] 2025-06-06 17:47:26,251 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677783063/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,251 | INFO     | extracted standard info from prmon json
[2025-06-06 19:47:46] 2025-06-06 17:47:26,251 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 19:47:46] 2025-06-06 17:47:26,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 19:47:46] 2025-06-06 17:47:26,252 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 19:47:46] 2025-06-06 17:47:26,252 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | fitting pss+swap vs Time
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | sum of square deviations: 110960220.0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | sum of deviations: -9958146666.0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | mean x: 1749229730.0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | mean y: 2578243.4929577466
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | -- intersect: 156987542799.868
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | intersect: 156987542799.868
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | chi2: 0.05062075522310273
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | -- intersect: 156987542799.868
[2025-06-06 19:47:46] 2025-06-06 17:47:26,253 | INFO     | current memory leak: -89.75 B/s (using 71 data points, chi2=0.05)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | ..............................
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . Timing measurements:
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . get job = 0 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . initial setup = 1 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . payload setup = 4 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . stage-in = 0 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . payload execution = 4748 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . stage-out = 0 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | . log creation = 0 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,254 | INFO     | ..............................
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | 
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | job summary report
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | --------------------------------------------------
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | PanDA job id: 6677783063
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | task id: 45006595
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | errors: (none)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | pilot state: finished 
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | transexitcode: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | exeerrorcode: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | exeerrordiag: 
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | exitcode: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | exitmsg: OK
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | cpuconsumptiontime: 18209 s
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | nevents: 400
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | neventsw: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | pid: 1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | pgrp: 1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | corecount: 4
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | event service: False
[2025-06-06 19:47:46] 2025-06-06 17:47:26,299 | INFO     | sizes: {0: 2397182, 1: 2397381, 3: 2397587, 11: 2397615, 4756: 2432787, 4757: 2432787, 4763: 2433085}
[2025-06-06 19:47:46] 2025-06-06 17:47:26,300 | INFO     | --------------------------------------------------
[2025-06-06 19:47:46] 2025-06-06 17:47:26,300 | INFO     | 
[2025-06-06 19:47:46] 2025-06-06 17:47:26,300 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | job 6677783063 has completed (purged errors)
[2025-06-06 19:47:46] 2025-06-06 17:47:26,313 | INFO     | overall cleanup function is called
[2025-06-06 19:47:46] 2025-06-06 17:47:26,719 | INFO     | PID=1076699 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 19:47:46] 2025-06-06 17:47:26,719 | INFO     | .. there are 2 such processes running
[2025-06-06 19:47:46] 2025-06-06 17:47:27,320 | INFO     | --- collectZombieJob: --- 10, [1083723]
[2025-06-06 19:47:46] 2025-06-06 17:47:27,320 | INFO     | zombie collector waiting for pid 1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:27,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 19:47:46] 2025-06-06 17:47:27,320 | INFO     | collected zombie processes
[2025-06-06 19:47:46] 2025-06-06 17:47:27,320 | INFO     | will attempt to kill all subprocesses of pid=1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:27,434 | INFO     | process IDs to be killed: [1083723] (in reverse order)
[2025-06-06 19:47:46] 2025-06-06 17:47:27,482 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 19:47:46] 2025-06-06 17:47:27,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 19:47:46] 2025-06-06 17:47:27,489 | INFO     | did not find any defunct processes belonging to 1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:27,492 | INFO     | did not find any defunct processes belonging to 1083723
[2025-06-06 19:47:46] 2025-06-06 17:47:27,493 | INFO     | ready for new job
[2025-06-06 19:47:46] 2025-06-06 17:47:27,493 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 19:47:46] 2025-06-06 17:47:27,494 | INFO     | **************************************
[2025-06-06 19:47:46] 2025-06-06 17:47:27,494 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 19:47:46] 2025-06-06 17:47:27,494 | INFO     | **************************************
[2025-06-06 19:47:46] 2025-06-06 17:47:27,494 | INFO     | 
[2025-06-06 19:47:46] 2025-06-06 17:47:27,496 | INFO     | architecture information:
[2025-06-06 19:47:46] 2025-06-06 17:47:27,496 | INFO     | executing command: cat /etc/os-release
[2025-06-06 19:47:46] 2025-06-06 17:47:27,505 | INFO     | cat /etc/os-release:
[2025-06-06 19:47:46] NAME="CentOS Linux"
[2025-06-06 19:47:46] VERSION="7 (Core)"
[2025-06-06 19:47:46] ID="centos"
[2025-06-06 19:47:46] ID_LIKE="rhel fedora"
[2025-06-06 19:47:46] VERSION_ID="7"
[2025-06-06 19:47:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 19:47:46] ANSI_COLOR="0;31"
[2025-06-06 19:47:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 19:47:46] HOME_URL="https://www.centos.org/"
[2025-06-06 19:47:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 19:47:46] 
[2025-06-06 19:47:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 19:47:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 19:47:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 19:47:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 19:47:46] 
[2025-06-06 19:47:46] 2025-06-06 17:47:27,505 | INFO     | **************************************
[2025-06-06 19:47:46] 2025-06-06 17:47:28,008 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-06-06 19:47:46] 2025-06-06 17:47:28,018 | INFO     | sufficient remaining disk space (715200135168 B)
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | INFO     | update_server=False
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:47:46] 2025-06-06 17:47:28,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 19:47:46] 2025-06-06 17:47:28,129 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 19:47:46] 2025-06-06 17:47:28,129 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 19:47:46] 2025-06-06 17:47:28,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 19:47:46] 2025-06-06 17:47:28,129 | INFO     | will abort loop
[2025-06-06 19:47:46] 2025-06-06 17:47:28,136 | INFO     | all data control threads have been joined
[2025-06-06 19:47:46] 2025-06-06 17:47:28,141 | INFO     | all job control threads have been joined
[2025-06-06 19:47:46] 2025-06-06 17:47:28,314 | INFO     | all payload control threads have been joined
[2025-06-06 19:47:46] 2025-06-06 17:47:28,725 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 19:47:46] 2025-06-06 17:47:28,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 19:47:46] 2025-06-06 17:47:28,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 19:47:46] 2025-06-06 17:47:29,024 | INFO     | [job] retrieve thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,024 | INFO     | [job] queue monitor thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,135 | INFO     | [job] job monitor thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,141 | INFO     | [data] control thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,145 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,146 | INFO     | [job] control thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,318 | INFO     | [payload] control thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:29,543 | INFO     | [payload] validate_post thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,025 | INFO     | [data] copytool_out thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,135 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,341 | INFO     | [data] copytool_in thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,467 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,519 | INFO     | [job] validate thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:30,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 19:47:46] 2025-06-06 17:47:30,615 | INFO     | [payload] failed_post thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:34,611 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:38,876 | INFO     | job.realtimelogging is not enabled
[2025-06-06 19:47:46] 2025-06-06 17:47:39,881 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 19:47:46] 2025-06-06 17:47:40,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23069139576640)>', '<ExcThread(monitor, started 23068902655744)>']
[2025-06-06 19:47:46] 2025-06-06 17:47:41,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 19:47:46] 2025-06-06 17:47:41,789 | INFO     | [monitor] control thread has ended
[2025-06-06 19:47:46] 2025-06-06 17:47:45,928 | INFO     | all workflow threads have been joined
[2025-06-06 19:47:46] 2025-06-06 17:47:45,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 19:47:46] 2025-06-06 17:47:45,929 | INFO     | traces error code: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:45,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 19:47:46] 2025-06-06 17:47:46,012 [wrapper] ==== pilot stdout END ====
[2025-06-06 19:47:46] 2025-06-06 17:47:46,014 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 19:47:46] 2025-06-06 17:47:46,016 [wrapper] pilotpid: 1076699
[2025-06-06 19:47:46] 2025-06-06 17:47:46,018 [wrapper] Pilot exit status: 0
[2025-06-06 19:47:46] 2025-06-06 17:47:46,024 [wrapper] pandaids: 6677783063
[2025-06-06 19:47:46] 2025-06-06 17:47:46,054 [wrapper] cleanup supervisor_pilot 1141044 1076700
[2025-06-06 19:47:46] 2025-06-06 17:47:46,056 [wrapper] Test setup, not cleaning
[2025-06-06 19:47:46] 2025-06-06 17:47:46,058 [wrapper] apfmon messages muted
[2025-06-06 19:47:46] 2025-06-06 17:47:46,059 [wrapper] ==== wrapper stdout END ====
[2025-06-06 19:47:46] 2025-06-06 17:47:46,061 [wrapper] ==== wrapper stderr END ====
[2025-06-06 19:47:46]  *** Error codes and diagnostics ***
[2025-06-06 19:47:46]     "exeErrorCode": 0,
[2025-06-06 19:47:46]     "exeErrorDiag": "",
[2025-06-06 19:47:46]     "pilotErrorCode": 0,
[2025-06-06 19:47:46]     "pilotErrorDiag": "",
[2025-06-06 19:47:46]  *** Listing of results directory ***
[2025-06-06 19:47:46] total 389104
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc      5111 Jun  3 18:42 queuedata.json
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-06 19:47:46] -rwx------ 1 boinc boinc     37140 Jun  3 18:44 runpilot2-wrapper.sh
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc       100 Jun  6 18:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 19:47:46] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 18:27 run_atlas
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc       105 Jun  6 18:27 job.xml
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc      6635 Jun  6 18:27 init_data.xml
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc 215460285 Jun  6 18:27 EVNT.45006593._001565.pool.root.1
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:27 start_atlas.sh
[2025-06-06 19:47:46] drwxrwx--x 2 boinc boinc      4096 Jun  6 18:27 shared
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc    508890 Jun  6 18:27 input.tar.gz
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc         0 Jun  6 18:27 boinc_lockfile
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc      2525 Jun  6 18:27 pandaJob.out
[2025-06-06 19:47:46] -rw------- 1 boinc boinc    985748 Jun  6 18:27 agis_schedconf.cvmfs.json
[2025-06-06 19:47:46] -rw------- 1 boinc boinc   1598969 Jun  6 18:27 agis_ddmendpoints.agis.ALL.json
[2025-06-06 19:47:46] drwx------ 4 boinc boinc      4096 Jun  6 18:27 pilot3
[2025-06-06 19:47:46] -rw------- 1 boinc boinc        95 Jun  6 19:46 pilot_heartbeat.json
[2025-06-06 19:47:46] -rw------- 1 boinc boinc 177689585 Jun  6 19:46 HITS.45006595._039027.pool.root.1
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc       529 Jun  6 19:46 boinc_task_state.xml
[2025-06-06 19:47:46] -rw------- 1 boinc boinc      1042 Jun  6 19:47 memory_monitor_summary.json
[2025-06-06 19:47:46] -rw------- 1 boinc boinc    253416 Jun  6 19:47 log.45006595._039027.job.log.tgz.1
[2025-06-06 19:47:46] -rw------- 1 boinc boinc      7721 Jun  6 19:47 heartbeat.json
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc        27 Jun  6 19:47 wrapper_checkpoint.txt
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc      8192 Jun  6 19:47 boinc_mmap_file
[2025-06-06 19:47:46] -rw------- 1 boinc boinc      4621 Jun  6 19:47 pilotlog.txt
[2025-06-06 19:47:46] -rw------- 1 boinc boinc    480114 Jun  6 19:47 log.45006595._039027.job.log.1
[2025-06-06 19:47:46] -rw------- 1 boinc boinc       357 Jun  6 19:47 output.list
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc       620 Jun  6 19:47 runtime_log
[2025-06-06 19:47:46] -rw------- 1 boinc boinc    747520 Jun  6 19:47 result.tar.gz
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc      9025 Jun  6 19:47 runtime_log.err
[2025-06-06 19:47:46] -rw------- 1 boinc boinc       660 Jun  6 19:47 78aMDmEvjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma7kKDmsH7uAo.diag
[2025-06-06 19:47:46] -rw-r--r-- 1 boinc boinc     21515 Jun  6 19:47 stderr.txt
[2025-06-06 19:47:46] HITS file was successfully produced:
[2025-06-06 19:47:46] -rw------- 1 boinc boinc 177689585 Jun  6 19:46 shared/HITS.pool.root.1
[2025-06-06 19:47:46]  *** Contents of shared directory: ***
[2025-06-06 19:47:46] total 385192
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc 215460285 Jun  6 18:27 ATLAS.root_0
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:27 start_atlas.sh
[2025-06-06 19:47:46] -rw-r--r-- 2 boinc boinc    508890 Jun  6 18:27 input.tar.gz
[2025-06-06 19:47:46] -rw------- 1 boinc boinc 177689585 Jun  6 19:46 HITS.pool.root.1
[2025-06-06 19:47:46] -rw------- 1 boinc boinc    747520 Jun  6 19:47 result.tar.gz
19:47:47 (1073003): run_atlas exited; CPU time 18263.879160
19:47:47 (1073003): called boinc_finish(0)

</stderr_txt>
]]>

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