Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:27:20 (940): wrapper (7.7.26015): starting
06:27:20 (940): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:27:20] Arguments: --nthreads 8
[2025-06-04 06:27:20] Threads: 8
[2025-06-04 06:27:20] Checking for CVMFS
[2025-06-04 06:27:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:27:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:27:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:27:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:27:23] 2.11.2.0 28532 32823 87704 146767 0 69 24213233 25165825 4293 130560 0 17529761 99.761 20316347 2500 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:27:23] CVMFS is ok
[2025-06-04 06:27:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:27:23] Checking for apptainer binary...
[2025-06-04 06:27:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:27:23] Running /usr/bin/apptainer --version
[2025-06-04 06:27:23] apptainer version 1.3.2-1.el7
[2025-06-04 06:27:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:36:58] cg-vwn472.simple-grid.lan
[2025-06-04 06:36:58] apptainer works
[2025-06-04 06:36:59] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:36:59] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:36:59] Starting ATLAS job with PandaID=6677782361
[2025-06-04 06:36:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:29:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:29:46] 2025-06-04 08:11:41,628 | INFO     | extracted standard info from prmon json
[2025-06-04 12:29:46] 2025-06-04 08:11:41,628 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:29:46] 2025-06-04 08:11:41,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:29:46] 2025-06-04 08:11:41,629 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:29:46] 2025-06-04 08:11:41,629 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:29:46] 2025-06-04 08:11:41,633 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:29:46] 2025-06-04 08:11:41,633 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,635 | INFO     | sum of deviations: 63016736432.99999
[2025-06-04 12:29:46] 2025-06-04 08:11:41,635 | INFO     | mean x: 1749018506.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,635 | INFO     | mean y: 2421734.246231156
[2025-06-04 12:29:46] 2025-06-04 08:11:41,635 | INFO     | -- intersect: -45102468073.17507
[2025-06-04 12:29:46] 2025-06-04 08:11:41,635 | INFO     | intersect: -45102468073.17507
[2025-06-04 12:29:46] 2025-06-04 08:11:41,636 | INFO     | chi2: 5.9052292398255215
[2025-06-04 12:29:46] 2025-06-04 08:11:41,636 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 12:29:46] 2025-06-04 08:11:41,637 | INFO     | sum of deviations: 75169010459.99997
[2025-06-04 12:29:46] 2025-06-04 08:11:41,637 | INFO     | mean x: 1749018353.5
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | mean y: 2431811.567010309
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | -- intersect: -58068811668.505875
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | intersect: -58068811668.505875
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | chi2: 5.092363359576553
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | current chi2=5.092363359576553 (change=13.76518755219375 %)
[2025-06-04 12:29:46] 2025-06-04 08:11:41,638 | INFO     | right removable region: 193
[2025-06-04 12:29:46] 2025-06-04 08:11:41,639 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 12:29:46] 2025-06-04 08:11:41,640 | INFO     | sum of deviations: -3074612158.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,640 | INFO     | mean x: 1749018658.5
[2025-06-04 12:29:46] 2025-06-04 08:11:41,640 | INFO     | mean y: 2477765.0206185565
[2025-06-04 12:29:46] 2025-06-04 08:11:41,640 | INFO     | -- intersect: 2377746260.334915
[2025-06-04 12:29:46] 2025-06-04 08:11:41,640 | INFO     | intersect: 2377746260.334915
[2025-06-04 12:29:46] 2025-06-04 08:11:41,641 | INFO     | chi2: 1.440403198661306
[2025-06-04 12:29:46] 2025-06-04 08:11:41,641 | INFO     | current chi2=1.440403198661306 (change=75.60800537687739 %)
[2025-06-04 12:29:46] 2025-06-04 08:11:41,641 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,642 | INFO     | sum of deviations: -21670945522.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,642 | INFO     | mean x: 1749018811.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | mean y: 2494231.1693121693
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | -- intersect: 18108416953.34019
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | intersect: 18108416953.34019
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | chi2: 0.9287353688202535
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | current chi2=0.9287353688202535 (change=35.52254190469659 %)
[2025-06-04 12:29:46] 2025-06-04 08:11:41,643 | INFO     | sum of square deviations: 1931608310.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | sum of deviations: -19506239559.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | mean x: 1749018963.5
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | mean y: 2492181.9239130435
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | -- intersect: 17664863335.869133
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | intersect: 17664863335.869133
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | chi2: 0.9274741016786279
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | current chi2=0.9274741016786279 (change=0.13580479262115516 %)
[2025-06-04 12:29:46] 2025-06-04 08:11:41,645 | INFO     | left removable region: 30
[2025-06-04 12:29:46] 2025-06-04 08:11:41,646 | INFO     | sum of square deviations: 1342841922.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,647 | INFO     | sum of deviations: 2350584614.0000005
[2025-06-04 12:29:46] 2025-06-04 08:11:41,647 | INFO     | mean x: 1749019238.0
[2025-06-04 12:29:46] 2025-06-04 08:11:41,647 | INFO     | mean y: 2495434.337423313
[2025-06-04 12:29:46] 2025-06-04 08:11:41,647 | INFO     | -- intersect: -3059084371.206363
[2025-06-04 12:29:46] 2025-06-04 08:11:41,647 | INFO     | intersect: -3059084371.206363
[2025-06-04 12:29:46] 2025-06-04 08:11:41,648 | INFO     | chi2: 0.0007920274582511128
[2025-06-04 12:29:46] 2025-06-04 08:11:41,648 | INFO     | -- intersect: -3059084371.206363
[2025-06-04 12:29:46] 2025-06-04 08:11:41,648 | INFO     | current memory leak: 1.75 B/s (using 163 data points, chi2=0.00)
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | ..............................
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . Timing measurements:
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . get job = 0 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . initial setup = 3 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . payload setup = 125 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . stage-in = 0 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . payload execution = 12287 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . stage-out = 3 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | . log creation = 1 s
[2025-06-04 12:29:46] 2025-06-04 08:11:41,649 | INFO     | ..............................
[2025-06-04 12:29:46] 2025-06-04 08:11:42,099 | INFO     | 
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | job summary report
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | --------------------------------------------------
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | PanDA job id: 6677782361
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | task id: 45006595
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | errors: (none)
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | pilot state: finished 
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | transexitcode: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | exeerrorcode: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | exeerrordiag: 
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | exitcode: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:42,100 | INFO     | exitmsg: OK
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | cpuconsumptiontime: 44279 s
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | nevents: 400
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | neventsw: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | pid: 21645
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | pgrp: 21645
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | corecount: 8
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | event service: False
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 89: 2405798, 98: 2406106, 1
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | --------------------------------------------------
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | 
[2025-06-04 12:29:46] 2025-06-04 08:11:42,101 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:29:46] 2025-06-04 08:11:42,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,587 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:29:46] 2025-06-04 08:11:42,587 | INFO     | job 6677782361 has completed (purged errors)
[2025-06-04 12:29:46] 2025-06-04 08:11:42,587 | INFO     | overall cleanup function is called
[2025-06-04 12:29:46] 2025-06-04 08:11:43,603 | INFO     | --- collectZombieJob: --- 10, [21645]
[2025-06-04 12:29:46] 2025-06-04 08:11:43,603 | INFO     | zombie collector waiting for pid 21645
[2025-06-04 12:29:46] 2025-06-04 08:11:43,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:29:46] 2025-06-04 08:11:43,604 | INFO     | collected zombie processes
[2025-06-04 12:29:46] 2025-06-04 08:11:43,604 | INFO     | will attempt to kill all subprocesses of pid=21645
[2025-06-04 12:29:46] 2025-06-04 08:11:43,728 | INFO     | process IDs to be killed: [21645] (in reverse order)
[2025-06-04 12:29:46] 2025-06-04 08:11:44,541 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:29:46] 2025-06-04 08:11:44,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:29:46] 2025-06-04 08:11:44,544 | INFO     | did not find any defunct processes belonging to 21645
[2025-06-04 12:29:46] 2025-06-04 08:11:44,547 | INFO     | did not find any defunct processes belonging to 21645
[2025-06-04 12:29:46] 2025-06-04 08:11:44,548 | INFO     | ready for new job
[2025-06-04 12:29:46] 2025-06-04 08:11:44,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:29:46] 2025-06-04 08:11:44,550 | INFO     | **************************************
[2025-06-04 12:29:46] 2025-06-04 08:11:44,550 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:29:46] 2025-06-04 08:11:44,550 | INFO     | **************************************
[2025-06-04 12:29:46] 2025-06-04 08:11:44,550 | INFO     | 
[2025-06-04 12:29:46] 2025-06-04 08:11:44,551 | INFO     | pilot is running in a VM
[2025-06-04 12:29:46] 2025-06-04 08:11:44,551 | INFO     | architecture information:
[2025-06-04 12:29:46] 2025-06-04 08:11:44,567 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:29:46] 2025-06-04 08:11:44,829 | INFO     | cat /etc/os-release:
[2025-06-04 12:29:46] NAME="CentOS Linux"
[2025-06-04 12:29:46] VERSION="7 (Core)"
[2025-06-04 12:29:46] ID="centos"
[2025-06-04 12:29:46] ID_LIKE="rhel fedora"
[2025-06-04 12:29:46] VERSION_ID="7"
[2025-06-04 12:29:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:29:46] ANSI_COLOR="0;31"
[2025-06-04 12:29:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:29:46] HOME_URL="https://www.centos.org/"
[2025-06-04 12:29:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:29:46] 
[2025-06-04 12:29:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:29:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:29:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:29:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:29:46] 
[2025-06-04 12:29:46] 2025-06-04 08:11:44,829 | INFO     | **************************************
[2025-06-04 12:29:46] 2025-06-04 08:11:45,331 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 12:29:46] 2025-06-04 08:11:45,568 | INFO     | sufficient remaining disk space (496645439488 B)
[2025-06-04 12:29:46] 2025-06-04 08:11:45,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:29:46] 2025-06-04 08:11:45,568 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:29:46] 2025-06-04 08:11:45,568 | INFO     | update_server=False
[2025-06-04 12:29:46] 2025-06-04 08:11:45,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:29:46] 2025-06-04 08:11:45,569 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:29:46] 2025-06-04 08:11:45,570 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:29:46] 2025-06-04 08:11:45,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:29:46] 2025-06-04 08:11:45,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:29:46] 2025-06-04 08:11:45,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:29:46] 2025-06-04 08:11:45,571 | INFO     | aborting loop
[2025-06-04 12:29:46] 2025-06-04 08:11:45,856 | INFO     | all job control threads have been joined
[2025-06-04 12:29:46] 2025-06-04 08:11:46,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:29:46] 2025-06-04 08:11:46,530 | INFO     | all data control threads have been joined
[2025-06-04 12:29:46] 2025-06-04 08:11:46,574 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:46,576 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:46,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:29:46] 2025-06-04 08:11:46,788 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:46,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:29:46] 2025-06-04 08:11:46,862 | INFO     | [job] control thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,021 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,027 | INFO     | all payload control threads have been joined
[2025-06-04 12:29:46] 2025-06-04 08:11:47,102 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,385 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,521 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,536 | INFO     | [data] control thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,765 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,782 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,795 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:47,830 | INFO     | [job] validate thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:48,034 | INFO     | [payload] control thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:48,227 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:50,770 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:29:46] 2025-06-04 08:11:52,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080826677056)>', '<ExcThread(monitor, started 140080081528576)>']
[2025-06-04 12:29:46] 2025-06-04 08:11:53,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:29:46] 2025-06-04 08:11:53,617 | INFO     | [monitor] control thread has ended
[2025-06-04 12:29:46] 2025-06-04 08:11:57,679 | INFO     | all workflow threads have been joined
[2025-06-04 12:29:46] 2025-06-04 08:11:57,679 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:29:46] 2025-06-04 08:11:57,680 | INFO     | traces error code: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:57,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:29:46] 2025-06-04 08:11:58,040 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:29:46] 2025-06-04 08:11:58,145 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:29:46] 2025-06-04 08:11:58,211 [wrapper] pilotpid: 11061
[2025-06-04 12:29:46] 2025-06-04 08:11:58,337 [wrapper] Pilot exit status: 0
[2025-06-04 12:29:46] 2025-06-04 08:11:58,800 [wrapper] pandaids: 6677782361
[2025-06-04 12:29:46] 2025-06-04 08:11:59,720 [wrapper] cleanup supervisor_pilot  6559 11062
[2025-06-04 12:29:46] 2025-06-04 08:11:59,777 [wrapper] Test setup, not cleaning
[2025-06-04 12:29:46] 2025-06-04 08:11:59,824 [wrapper] apfmon messages muted
[2025-06-04 12:29:46] 2025-06-04 08:11:59,920 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:29:46] 2025-06-04 08:11:59,978 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:29:46]  *** Error codes and diagnostics ***
[2025-06-04 12:29:46]     "exeErrorCode": 0,
[2025-06-04 12:29:46]     "exeErrorDiag": "",
[2025-06-04 12:29:46]     "pilotErrorCode": 0,
[2025-06-04 12:29:46]     "pilotErrorDiag": "",
[2025-06-04 12:29:46]  *** Listing of results directory ***
[2025-06-04 12:29:46] total 389288
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:39 queuedata.json
[2025-06-04 12:29:46] -rwx------. 1 boinc boinc     37140 Jun  3 18:39 runpilot2-wrapper.sh
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:39 pilot3.tar.gz
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:29:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:27 run_atlas
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:27 job.xml
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc 214613537 Jun  4 06:27 EVNT.45006593._001560.pool.root.1
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:27 start_atlas.sh
[2025-06-04 12:29:46] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:27 shared
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc    508878 Jun  4 06:27 input.tar.gz
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:27 init_data.xml
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:27 boinc_lockfile
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:36 pandaJob.out
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc    986077 Jun  4 06:39 agis_schedconf.cvmfs.json
[2025-06-04 12:29:46] drwx------. 4 boinc boinc      4096 Jun  4 06:39 pilot3
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc 177243745 Jun  4 10:08 HITS.45006595._038905.pool.root.1
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc       531 Jun  4 10:09 boinc_task_state.xml
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc      1015 Jun  4 10:10 memory_monitor_summary.json
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc   1603667 Jun  4 10:10 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc    383140 Jun  4 10:10 log.45006595._038905.job.log.tgz.1
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc        95 Jun  4 10:10 pilot_heartbeat.json
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc      7690 Jun  4 10:11 heartbeat.json
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc      4539 Jun  4 10:11 pilotlog.txt
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc   1094338 Jun  4 10:11 log.45006595._038905.job.log.1
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc       357 Jun  4 10:12 output.list
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:12 runtime_log
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc   1495040 Jun  4 10:12 result.tar.gz
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc       657 Jun  4 10:12 VdXKDm9qjg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm9HZKDmDGiosm.diag
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc      8659 Jun  4 10:12 runtime_log.err
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc      8192 Jun  4 12:29 boinc_mmap_file
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc        28 Jun  4 12:29 wrapper_checkpoint.txt
[2025-06-04 12:29:46] -rw-r--r--. 1 boinc boinc     20504 Jun  4 12:29 stderr.txt
[2025-06-04 12:29:46] HITS file was successfully produced:
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc 177243745 Jun  4 10:08 shared/HITS.pool.root.1
[2025-06-04 12:29:46]  *** Contents of shared directory: ***
[2025-06-04 12:29:46] total 384652
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc 214613537 Jun  4 06:27 ATLAS.root_0
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:27 start_atlas.sh
[2025-06-04 12:29:46] -rw-r--r--. 2 boinc boinc    508878 Jun  4 06:27 input.tar.gz
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc 177243745 Jun  4 10:08 HITS.pool.root.1
[2025-06-04 12:29:46] -rw-------. 1 boinc boinc   1495040 Jun  4 10:12 result.tar.gz
12:29:48 (940): run_atlas exited; CPU time 44438.513939
12:29:48 (940): called boinc_finish(0)

</stderr_txt>
]]>

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