Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:46 (21621): wrapper (7.7.26015): starting
06:12:46 (21621): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:12:46] Arguments: --nthreads 8
[2025-06-04 06:12:46] Threads: 8
[2025-06-04 06:12:46] Checking for CVMFS
[2025-06-04 06:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:12:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:12:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:12:48] 2.11.2.0 13959 32894 88344 146767 1 52 21229487 25165824 4520 130560 0 17592763 99.759 19015574 3440 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 06:12:48] CVMFS is ok
[2025-06-04 06:12:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:12:48] Checking for apptainer binary...
[2025-06-04 06:12:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:12:48] Running /usr/bin/apptainer --version
[2025-06-04 06:12:49] apptainer version 1.3.2-1.el7
[2025-06-04 06:12:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:14:31] cg-vwn499.simple-grid.lan
[2025-06-04 06:14:31] apptainer works
[2025-06-04 06:14:31] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:14:31] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:14:31] Starting ATLAS job with PandaID=6677919297
[2025-06-04 06:14:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:35:06]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:35:06] 2025-06-04 08:06:57,179 | INFO     | extracted standard info from prmon json
[2025-06-04 10:35:06] 2025-06-04 08:06:57,179 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:35:06] 2025-06-04 08:06:57,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:35:06] 2025-06-04 08:06:57,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:35:06] 2025-06-04 08:06:57,179 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:35:06] 2025-06-04 08:06:57,194 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:35:06] 2025-06-04 08:06:57,195 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,196 | INFO     | sum of deviations: 72422737359.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,196 | INFO     | mean x: 1749017724.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,196 | INFO     | mean y: 2428917.8194444445
[2025-06-04 10:35:06] 2025-06-04 08:06:57,197 | INFO     | -- intersect: -40533373791.439735
[2025-06-04 10:35:06] 2025-06-04 08:06:57,197 | INFO     | intersect: -40533373791.439735
[2025-06-04 10:35:06] 2025-06-04 08:06:57,197 | INFO     | chi2: 6.40112250911226
[2025-06-04 10:35:06] 2025-06-04 08:06:57,197 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,199 | INFO     | sum of deviations: 84747309821.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,199 | INFO     | mean x: 1749017572.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,199 | INFO     | mean y: 2437589.218009479
[2025-06-04 10:35:06] 2025-06-04 08:06:57,199 | INFO     | -- intersect: -50884235586.95478
[2025-06-04 10:35:06] 2025-06-04 08:06:57,199 | INFO     | intersect: -50884235586.95478
[2025-06-04 10:35:06] 2025-06-04 08:06:57,200 | INFO     | chi2: 5.687414469864347
[2025-06-04 10:35:06] 2025-06-04 08:06:57,200 | INFO     | current chi2=5.687414469864347 (change=11.14973253881519 %)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,200 | INFO     | right removable region: 210
[2025-06-04 10:35:06] 2025-06-04 08:06:57,200 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | sum of deviations: -1186299757.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | mean x: 1749017877.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | mean y: 2481803.5355450236
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | -- intersect: 714797730.4708742
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | intersect: 714797730.4708742
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | chi2: 1.7022061948430889
[2025-06-04 10:35:06] 2025-06-04 08:06:57,202 | INFO     | current chi2=1.7022061948430889 (change=73.40769228490896 %)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,203 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,204 | INFO     | sum of deviations: -27003263785.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,204 | INFO     | mean x: 1749018029.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,204 | INFO     | mean y: 2501099.6844660193
[2025-06-04 10:35:06] 2025-06-04 08:06:57,204 | INFO     | -- intersect: 17426213520.547657
[2025-06-04 10:35:06] 2025-06-04 08:06:57,205 | INFO     | intersect: 17426213520.547657
[2025-06-04 10:35:06] 2025-06-04 08:06:57,205 | INFO     | chi2: 0.8876522496810647
[2025-06-04 10:35:06] 2025-06-04 08:06:57,205 | INFO     | current chi2=0.8876522496810647 (change=47.852836373745575 %)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,205 | INFO     | sum of square deviations: 2518000700.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | sum of deviations: -22590335570.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | mean x: 1749018182.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | mean y: 2497575.8706467664
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | -- intersect: 15693878300.828876
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | intersect: 15693878300.828876
[2025-06-04 10:35:06] 2025-06-04 08:06:57,207 | INFO     | chi2: 0.8702367663117511
[2025-06-04 10:35:06] 2025-06-04 08:06:57,208 | INFO     | current chi2=0.8702367663117511 (change=1.9619714111659228 %)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,208 | INFO     | left removable region: 30
[2025-06-04 10:35:06] 2025-06-04 08:06:57,208 | INFO     | sum of square deviations: 1808350185.0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,209 | INFO     | sum of deviations: 2682379229.9999995
[2025-06-04 10:35:06] 2025-06-04 08:06:57,209 | INFO     | mean x: 1749018456.5
[2025-06-04 10:35:06] 2025-06-04 08:06:57,209 | INFO     | mean y: 2498167.2666666666
[2025-06-04 10:35:06] 2025-06-04 08:06:57,210 | INFO     | -- intersect: -2591872557.78306
[2025-06-04 10:35:06] 2025-06-04 08:06:57,210 | INFO     | intersect: -2591872557.78306
[2025-06-04 10:35:06] 2025-06-04 08:06:57,210 | INFO     | chi2: 0.0003091027540900188
[2025-06-04 10:35:06] 2025-06-04 08:06:57,210 | INFO     | -- intersect: -2591872557.78306
[2025-06-04 10:35:06] 2025-06-04 08:06:57,210 | INFO     | current memory leak: 1.48 B/s (using 180 data points, chi2=0.00)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | ..............................
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | . Timing measurements:
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | . get job = 0 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | . initial setup = 11 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | . payload setup = 157 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,211 | INFO     | . stage-in = 0 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,212 | INFO     | . payload execution = 13316 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,212 | INFO     | . stage-out = 3 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,212 | INFO     | . log creation = 1 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,212 | INFO     | ..............................
[2025-06-04 10:35:06] 2025-06-04 08:06:57,559 | INFO     | 
[2025-06-04 10:35:06] 2025-06-04 08:06:57,559 | INFO     | job summary report
[2025-06-04 10:35:06] 2025-06-04 08:06:57,560 | INFO     | --------------------------------------------------
[2025-06-04 10:35:06] 2025-06-04 08:06:57,560 | INFO     | PanDA job id: 6677919297
[2025-06-04 10:35:06] 2025-06-04 08:06:57,560 | INFO     | task id: 45006595
[2025-06-04 10:35:06] 2025-06-04 08:06:57,560 | INFO     | errors: (none)
[2025-06-04 10:35:06] 2025-06-04 08:06:57,560 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:35:06] 2025-06-04 08:06:57,563 | INFO     | pilot state: finished 
[2025-06-04 10:35:06] 2025-06-04 08:06:57,563 | INFO     | transexitcode: 0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | exeerrorcode: 0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | exeerrordiag: 
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | exitcode: 0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | exitmsg: OK
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | cpuconsumptiontime: 47804 s
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | nevents: 400
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | neventsw: 0
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | pid: 3616
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | pgrp: 3616
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | corecount: 8
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | event service: False
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | sizes: {0: 2404356, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 87: 2405564, 95: 2405798, 98: 2406106, 1
[2025-06-04 10:35:06] 2025-06-04 08:06:57,564 | INFO     | --------------------------------------------------
[2025-06-04 10:35:06] 2025-06-04 08:06:57,565 | INFO     | 
[2025-06-04 10:35:06] 2025-06-04 08:06:57,565 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:35:06] 2025-06-04 08:06:58,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:35:06] 2025-06-04 08:06:58,014 | INFO     | job 6677919297 has completed (purged errors)
[2025-06-04 10:35:06] 2025-06-04 08:06:58,014 | INFO     | overall cleanup function is called
[2025-06-04 10:35:06] 2025-06-04 08:06:59,022 | INFO     | --- collectZombieJob: --- 10, [3616]
[2025-06-04 10:35:06] 2025-06-04 08:06:59,022 | INFO     | zombie collector waiting for pid 3616
[2025-06-04 10:35:06] 2025-06-04 08:06:59,023 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:35:06] 2025-06-04 08:06:59,023 | INFO     | collected zombie processes
[2025-06-04 10:35:06] 2025-06-04 08:06:59,023 | INFO     | will attempt to kill all subprocesses of pid=3616
[2025-06-04 10:35:06] 2025-06-04 08:06:59,122 | INFO     | process IDs to be killed: [3616] (in reverse order)
[2025-06-04 10:35:06] 2025-06-04 08:06:59,726 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:35:06] 2025-06-04 08:06:59,726 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:35:06] 2025-06-04 08:06:59,729 | INFO     | did not find any defunct processes belonging to 3616
[2025-06-04 10:35:06] 2025-06-04 08:06:59,732 | INFO     | did not find any defunct processes belonging to 3616
[2025-06-04 10:35:06] 2025-06-04 08:06:59,733 | INFO     | ready for new job
[2025-06-04 10:35:06] 2025-06-04 08:06:59,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:35:06] 2025-06-04 08:06:59,735 | INFO     | **************************************
[2025-06-04 10:35:06] 2025-06-04 08:06:59,735 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:35:06] 2025-06-04 08:06:59,735 | INFO     | **************************************
[2025-06-04 10:35:06] 2025-06-04 08:06:59,735 | INFO     | 
[2025-06-04 10:35:06] 2025-06-04 08:06:59,736 | INFO     | pilot is running in a VM
[2025-06-04 10:35:06] 2025-06-04 08:06:59,736 | INFO     | architecture information:
[2025-06-04 10:35:06] 2025-06-04 08:06:59,743 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:35:06] 2025-06-04 08:07:00,043 | INFO     | cat /etc/os-release:
[2025-06-04 10:35:06] NAME="CentOS Linux"
[2025-06-04 10:35:06] VERSION="7 (Core)"
[2025-06-04 10:35:06] ID="centos"
[2025-06-04 10:35:06] ID_LIKE="rhel fedora"
[2025-06-04 10:35:06] VERSION_ID="7"
[2025-06-04 10:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:35:06] ANSI_COLOR="0;31"
[2025-06-04 10:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:35:06] HOME_URL="https://www.centos.org/"
[2025-06-04 10:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:35:06] 
[2025-06-04 10:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:35:06] 
[2025-06-04 10:35:06] 2025-06-04 08:07:00,043 | INFO     | **************************************
[2025-06-04 10:35:06] 2025-06-04 08:07:00,546 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-04 10:35:06] 2025-06-04 08:07:00,755 | INFO     | sufficient remaining disk space (496179871744 B)
[2025-06-04 10:35:06] 2025-06-04 08:07:00,755 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:35:06] 2025-06-04 08:07:00,755 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:35:06] 2025-06-04 08:07:00,756 | INFO     | update_server=False
[2025-06-04 10:35:06] 2025-06-04 08:07:00,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:35:06] 2025-06-04 08:07:00,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:35:06] 2025-06-04 08:07:00,757 | INFO     | aborting loop
[2025-06-04 10:35:06] 2025-06-04 08:07:00,757 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:35:06] 2025-06-04 08:07:00,758 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:35:06] 2025-06-04 08:07:00,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:35:06] 2025-06-04 08:07:00,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:35:06] 2025-06-04 08:07:00,760 | INFO     | all job control threads have been joined
[2025-06-04 10:35:06] 2025-06-04 08:07:00,870 | INFO     | all payload control threads have been joined
[2025-06-04 10:35:06] 2025-06-04 08:07:01,761 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,762 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,766 | INFO     | [job] control thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,802 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,855 | INFO     | all data control threads have been joined
[2025-06-04 10:35:06] 2025-06-04 08:07:01,876 | INFO     | [payload] control thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,908 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:01,983 | INFO     | [job] validate thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:02,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:35:06] 2025-06-04 08:07:02,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:35:06] 2025-06-04 08:07:02,293 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:02,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:35:06] 2025-06-04 08:07:02,581 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:02,647 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:02,860 | INFO     | [data] control thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:02,872 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:03,116 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:03,348 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:04,125 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:06,012 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:35:06] 2025-06-04 08:07:07,547 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140358744340288)>', '<ExcThread(monitor, started 140358163875584)>']
[2025-06-04 10:35:06] 2025-06-04 08:07:07,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:35:06] 2025-06-04 08:07:07,798 | INFO     | [monitor] control thread has ended
[2025-06-04 10:35:06] 2025-06-04 08:07:12,573 | INFO     | all workflow threads have been joined
[2025-06-04 10:35:06] 2025-06-04 08:07:12,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:35:06] 2025-06-04 08:07:12,574 | INFO     | traces error code: 0
[2025-06-04 10:35:06] 2025-06-04 08:07:12,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:35:06] 2025-06-04 08:07:12,923 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:35:06] 2025-06-04 08:07:12,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:35:06] 2025-06-04 08:07:13,047 [wrapper] pilotpid: 29345
[2025-06-04 10:35:06] 2025-06-04 08:07:13,087 [wrapper] Pilot exit status: 0
[2025-06-04 10:35:06] 2025-06-04 08:07:13,442 [wrapper] pandaids: 6677919297
[2025-06-04 10:35:06] 2025-06-04 08:07:14,326 [wrapper] cleanup supervisor_pilot 13126 29346
[2025-06-04 10:35:06] 2025-06-04 08:07:14,382 [wrapper] Test setup, not cleaning
[2025-06-04 10:35:06] 2025-06-04 08:07:14,514 [wrapper] apfmon messages muted
[2025-06-04 10:35:06] 2025-06-04 08:07:14,609 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:35:06] 2025-06-04 08:07:14,710 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:35:06]  *** Error codes and diagnostics ***
[2025-06-04 10:35:06]     "exeErrorCode": 0,
[2025-06-04 10:35:06]     "exeErrorDiag": "",
[2025-06-04 10:35:06]     "pilotErrorCode": 0,
[2025-06-04 10:35:06]     "pilotErrorDiag": "",
[2025-06-04 10:35:06]  *** Listing of results directory ***
[2025-06-04 10:35:06] total 401604
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:01 queuedata.json
[2025-06-04 10:35:06] -rwx------. 1 boinc boinc     37140 Jun  3 20:01 runpilot2-wrapper.sh
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc       100 Jun  4 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:35:06] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 06:12 run_atlas
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc       105 Jun  4 06:12 job.xml
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc      6392 Jun  4 06:12 init_data.xml
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc 217595508 Jun  4 06:12 EVNT.45006593._001671.pool.root.1
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:12 start_atlas.sh
[2025-06-04 10:35:06] drwxrwx--x. 2 boinc boinc        68 Jun  4 06:12 shared
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc    508877 Jun  4 06:12 input.tar.gz
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc         0 Jun  4 06:12 boinc_lockfile
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc      2525 Jun  4 06:14 pandaJob.out
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc    986077 Jun  4 06:17 agis_schedconf.cvmfs.json
[2025-06-04 10:35:06] drwx------. 4 boinc boinc      4096 Jun  4 06:17 pilot3
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc 186718252 Jun  4 10:04 HITS.45006595._041683.pool.root.1
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc       530 Jun  4 10:04 boinc_task_state.xml
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc      1014 Jun  4 10:05 memory_monitor_summary.json
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc   1603667 Jun  4 10:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc    379301 Jun  4 10:05 log.45006595._041683.job.log.tgz.1
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc        95 Jun  4 10:06 pilot_heartbeat.json
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc      7689 Jun  4 10:06 heartbeat.json
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc      4539 Jun  4 10:07 pilotlog.txt
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc   1174038 Jun  4 10:07 log.45006595._041683.job.log.1
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc       357 Jun  4 10:07 output.list
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:07 runtime_log
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc   1576960 Jun  4 10:07 result.tar.gz
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc      8659 Jun  4 10:07 runtime_log.err
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc       657 Jun  4 10:07 hCZKDmZ8kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrZlKDmH2NwZn.diag
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:35 boinc_mmap_file
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:35 wrapper_checkpoint.txt
[2025-06-04 10:35:06] -rw-r--r--. 1 boinc boinc     20494 Jun  4 10:35 stderr.txt
[2025-06-04 10:35:06] HITS file was successfully produced:
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc 186718252 Jun  4 10:04 shared/HITS.pool.root.1
[2025-06-04 10:35:06]  *** Contents of shared directory: ***
[2025-06-04 10:35:06] total 396896
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc 217595508 Jun  4 06:12 ATLAS.root_0
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc     15093 Jun  4 06:12 start_atlas.sh
[2025-06-04 10:35:06] -rw-r--r--. 2 boinc boinc    508877 Jun  4 06:12 input.tar.gz
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc 186718252 Jun  4 10:04 HITS.pool.root.1
[2025-06-04 10:35:06] -rw-------. 1 boinc boinc   1576960 Jun  4 10:07 result.tar.gz
10:35:08 (21621): run_atlas exited; CPU time 47984.831884
10:35:08 (21621): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN