Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:58 (14355): wrapper (7.7.26015): starting
04:51:58 (14355): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:51:58] Arguments: --nthreads 8
[2025-06-04 04:51:58] Threads: 8
[2025-06-04 04:51:58] Checking for CVMFS
[2025-06-04 04:51:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:51:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:51:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:52:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:52:01] 2.11.2.0 4277 32620 96848 146763 1 137 17221439 25165825 4127 130560 0 16341009 99.776 17967311 2123 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 04:52:01] CVMFS is ok
[2025-06-04 04:52:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:52:01] Checking for apptainer binary...
[2025-06-04 04:52:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:52:01] Running /usr/bin/apptainer --version
[2025-06-04 04:52:01] apptainer version 1.3.2-1.el7
[2025-06-04 04:52:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:53:33] cg-vwn279.simple-grid.lan
[2025-06-04 04:53:33] apptainer works
[2025-06-04 04:53:33] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:53:33] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:53:33] Starting ATLAS job with PandaID=6677864215
[2025-06-04 04:53:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:06:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:06:04] 2025-06-04 06:52:12,915 | INFO     | extracted standard info from prmon json
[2025-06-04 11:06:04] 2025-06-04 06:52:12,915 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:06:04] 2025-06-04 06:52:12,915 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:06:04] 2025-06-04 06:52:12,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:06:04] 2025-06-04 06:52:12,916 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:06:04] 2025-06-04 06:52:12,921 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:06:04] 2025-06-04 06:52:12,922 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,924 | INFO     | sum of deviations: 29197827388.000023
[2025-06-04 11:06:04] 2025-06-04 06:52:12,924 | INFO     | mean x: 1749012965.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,924 | INFO     | mean y: 2445655.6785714286
[2025-06-04 11:06:04] 2025-06-04 06:52:12,924 | INFO     | -- intersect: -14650662063.316877
[2025-06-04 11:06:04] 2025-06-04 06:52:12,924 | INFO     | intersect: -14650662063.316877
[2025-06-04 11:06:04] 2025-06-04 06:52:12,925 | INFO     | chi2: 3.1962436431358134
[2025-06-04 11:06:04] 2025-06-04 06:52:12,925 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,927 | INFO     | sum of deviations: 43915299096.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,927 | INFO     | mean x: 1749012813.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,928 | INFO     | mean y: 2455301.5388127854
[2025-06-04 11:06:04] 2025-06-04 06:52:12,928 | INFO     | -- intersect: -23580983016.165848
[2025-06-04 11:06:04] 2025-06-04 06:52:12,928 | INFO     | intersect: -23580983016.165848
[2025-06-04 11:06:04] 2025-06-04 06:52:12,928 | INFO     | chi2: 2.3366246772451302
[2025-06-04 11:06:04] 2025-06-04 06:52:12,928 | INFO     | current chi2=2.3366246772451302 (change=26.894663294420095 %)
[2025-06-04 11:06:04] 2025-06-04 06:52:12,929 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,931 | INFO     | sum of deviations: 42725989721.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,931 | INFO     | mean x: 1749012660.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,931 | INFO     | mean y: 2454469.542056075
[2025-06-04 11:06:04] 2025-06-04 06:52:12,931 | INFO     | -- intersect: -24588468205.56823
[2025-06-04 11:06:04] 2025-06-04 06:52:12,931 | INFO     | intersect: -24588468205.56823
[2025-06-04 11:06:04] 2025-06-04 06:52:12,932 | INFO     | chi2: 2.3386062774453102
[2025-06-04 11:06:04] 2025-06-04 06:52:12,932 | INFO     | current chi2=2.3386062774453102 (change=-0.08480609742238573 %)
[2025-06-04 11:06:04] 2025-06-04 06:52:12,932 | INFO     | right removable region: 213
[2025-06-04 11:06:04] 2025-06-04 06:52:12,933 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,935 | INFO     | sum of deviations: -20478906763.000004
[2025-06-04 11:06:04] 2025-06-04 06:52:12,935 | INFO     | mean x: 1749013118.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,935 | INFO     | mean y: 2478682.105022831
[2025-06-04 11:06:04] 2025-06-04 06:52:12,935 | INFO     | -- intersect: 11000083813.394974
[2025-06-04 11:06:04] 2025-06-04 06:52:12,935 | INFO     | intersect: 11000083813.394974
[2025-06-04 11:06:04] 2025-06-04 06:52:12,936 | INFO     | chi2: 1.0268507993002147
[2025-06-04 11:06:04] 2025-06-04 06:52:12,936 | INFO     | current chi2=1.0268507993002147 (change=67.87320010771212 %)
[2025-06-04 11:06:04] 2025-06-04 06:52:12,936 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,938 | INFO     | sum of deviations: -22376737512.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,938 | INFO     | mean x: 1749013270.5
[2025-06-04 11:06:04] 2025-06-04 06:52:12,938 | INFO     | mean y: 2479940.771028037
[2025-06-04 11:06:04] 2025-06-04 06:52:12,939 | INFO     | -- intersect: 12881404862.092916
[2025-06-04 11:06:04] 2025-06-04 06:52:12,939 | INFO     | intersect: 12881404862.092916
[2025-06-04 11:06:04] 2025-06-04 06:52:12,939 | INFO     | chi2: 0.9787125330992408
[2025-06-04 11:06:04] 2025-06-04 06:52:12,939 | INFO     | current chi2=0.9787125330992408 (change=4.687951378504018 %)
[2025-06-04 11:06:04] 2025-06-04 06:52:12,939 | INFO     | left removable region: 20
[2025-06-04 11:06:04] 2025-06-04 06:52:12,940 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,941 | INFO     | sum of deviations: 5787330591.999998
[2025-06-04 11:06:04] 2025-06-04 06:52:12,941 | INFO     | mean x: 1749013240.0
[2025-06-04 11:06:04] 2025-06-04 06:52:12,941 | INFO     | mean y: 2480065.7720207255
[2025-06-04 11:06:04] 2025-06-04 06:52:12,942 | INFO     | -- intersect: -4538323312.944471
[2025-06-04 11:06:04] 2025-06-04 06:52:12,942 | INFO     | intersect: -4538323312.944471
[2025-06-04 11:06:04] 2025-06-04 06:52:12,942 | INFO     | chi2: 0.0006445637127597148
[2025-06-04 11:06:04] 2025-06-04 06:52:12,942 | INFO     | -- intersect: -4538323312.944471
[2025-06-04 11:06:04] 2025-06-04 06:52:12,942 | INFO     | current memory leak: 2.60 B/s (using 193 data points, chi2=0.00)
[2025-06-04 11:06:04] 2025-06-04 06:52:12,943 | INFO     | ..............................
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . Timing measurements:
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . get job = 0 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . initial setup = 4 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . payload setup = 151 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . stage-in = 0 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . payload execution = 13743 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . stage-out = 6 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | . log creation = 0 s
[2025-06-04 11:06:04] 2025-06-04 06:52:12,944 | INFO     | ..............................
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | 
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | job summary report
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | --------------------------------------------------
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | PanDA job id: 6677864215
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | task id: 45006595
[2025-06-04 11:06:04] 2025-06-04 06:52:13,107 | INFO     | errors: (none)
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | pilot state: finished 
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | transexitcode: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | exeerrorcode: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | exeerrordiag: 
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | exitcode: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | exitmsg: OK
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | cpuconsumptiontime: 50037 s
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | nevents: 400
[2025-06-04 11:06:04] 2025-06-04 06:52:13,108 | INFO     | neventsw: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | pid: 32728
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | pgrp: 32728
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | corecount: 8
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | event service: False
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | sizes: {0: 2404958, 1: 2405213, 12: 2405213, 23: 2405241, 34: 2405269, 44: 2405297, 55: 2405453, 66: 2405481, 76: 2405715, 77: 2405771, 13898: 2435488, 13899: 2435
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | --------------------------------------------------
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | 
[2025-06-04 11:06:04] 2025-06-04 06:52:13,109 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-04 11:06:04] 2025-06-04 06:52:13,693 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,693 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:06:04] 2025-06-04 06:52:13,696 | INFO     | job 6677864215 has completed (purged errors)
[2025-06-04 11:06:04] 2025-06-04 06:52:13,696 | INFO     | overall cleanup function is called
[2025-06-04 11:06:04] 2025-06-04 06:52:14,706 | INFO     | --- collectZombieJob: --- 10, [32728]
[2025-06-04 11:06:04] 2025-06-04 06:52:14,706 | INFO     | zombie collector waiting for pid 32728
[2025-06-04 11:06:04] 2025-06-04 06:52:14,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:06:04] 2025-06-04 06:52:14,706 | INFO     | collected zombie processes
[2025-06-04 11:06:04] 2025-06-04 06:52:14,706 | INFO     | will attempt to kill all subprocesses of pid=32728
[2025-06-04 11:06:04] 2025-06-04 06:52:14,833 | INFO     | process IDs to be killed: [32728] (in reverse order)
[2025-06-04 11:06:04] 2025-06-04 06:52:15,494 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:06:04] 2025-06-04 06:52:15,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:06:04] 2025-06-04 06:52:15,498 | INFO     | did not find any defunct processes belonging to 32728
[2025-06-04 11:06:04] 2025-06-04 06:52:15,502 | INFO     | did not find any defunct processes belonging to 32728
[2025-06-04 11:06:04] 2025-06-04 06:52:15,502 | INFO     | ready for new job
[2025-06-04 11:06:04] 2025-06-04 06:52:15,502 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:06:04] 2025-06-04 06:52:15,505 | INFO     | **************************************
[2025-06-04 11:06:04] 2025-06-04 06:52:15,505 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:06:04] 2025-06-04 06:52:15,505 | INFO     | **************************************
[2025-06-04 11:06:04] 2025-06-04 06:52:15,505 | INFO     | 
[2025-06-04 11:06:04] 2025-06-04 06:52:15,506 | INFO     | pilot is running in a VM
[2025-06-04 11:06:04] 2025-06-04 06:52:15,506 | INFO     | architecture information:
[2025-06-04 11:06:04] 2025-06-04 06:52:15,506 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:06:04] 2025-06-04 06:52:15,718 | INFO     | cat /etc/os-release:
[2025-06-04 11:06:04] NAME="CentOS Linux"
[2025-06-04 11:06:04] VERSION="7 (Core)"
[2025-06-04 11:06:04] ID="centos"
[2025-06-04 11:06:04] ID_LIKE="rhel fedora"
[2025-06-04 11:06:04] VERSION_ID="7"
[2025-06-04 11:06:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:06:04] ANSI_COLOR="0;31"
[2025-06-04 11:06:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:06:04] HOME_URL="https://www.centos.org/"
[2025-06-04 11:06:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:06:04] 
[2025-06-04 11:06:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:06:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:06:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:06:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:06:04] 
[2025-06-04 11:06:04] 2025-06-04 06:52:15,719 | INFO     | **************************************
[2025-06-04 11:06:04] 2025-06-04 06:52:16,223 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-04 11:06:04] 2025-06-04 06:52:16,471 | INFO     | sufficient remaining disk space (496908632064 B)
[2025-06-04 11:06:04] 2025-06-04 06:52:16,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:06:04] 2025-06-04 06:52:16,471 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:06:04] 2025-06-04 06:52:16,471 | INFO     | update_server=False
[2025-06-04 11:06:04] 2025-06-04 06:52:16,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:06:04] 2025-06-04 06:52:16,474 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:06:04] 2025-06-04 06:52:16,474 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:06:04] 2025-06-04 06:52:16,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:06:04] 2025-06-04 06:52:16,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:06:04] 2025-06-04 06:52:16,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:06:04] 2025-06-04 06:52:17,079 | INFO     | all payload control threads have been joined
[2025-06-04 11:06:04] 2025-06-04 06:52:17,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:06:04] 2025-06-04 06:52:17,335 | INFO     | aborting loop
[2025-06-04 11:06:04] 2025-06-04 06:52:17,348 | INFO     | all data control threads have been joined
[2025-06-04 11:06:04] 2025-06-04 06:52:17,477 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:17,495 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:06:04] 2025-06-04 06:52:17,587 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:17,834 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:17,854 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:17,918 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,086 | INFO     | [payload] control thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,117 | INFO     | all job control threads have been joined
[2025-06-04 11:06:04] 2025-06-04 06:52:18,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:06:04] 2025-06-04 06:52:18,341 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,354 | INFO     | [data] control thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,815 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,829 | INFO     | [job] validate thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,845 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:18,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:19,124 | INFO     | [job] control thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:19,128 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:19,502 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:20,686 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:06:04] 2025-06-04 06:52:21,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107988879168)>', '<ExcThread(monitor, started 140107319334656)>']
[2025-06-04 11:06:04] 2025-06-04 06:52:21,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:06:04] 2025-06-04 06:52:21,504 | INFO     | [monitor] control thread has ended
[2025-06-04 11:06:04] 2025-06-04 06:52:26,195 | INFO     | all workflow threads have been joined
[2025-06-04 11:06:04] 2025-06-04 06:52:26,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:06:04] 2025-06-04 06:52:26,195 | INFO     | traces error code: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:26,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:06:04] 2025-06-04 06:52:26,579 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:06:04] 2025-06-04 06:52:26,660 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:06:04] 2025-06-04 06:52:26,713 [wrapper] pilotpid: 22070
[2025-06-04 11:06:04] 2025-06-04 06:52:26,780 [wrapper] Pilot exit status: 0
[2025-06-04 11:06:04] 2025-06-04 06:52:27,137 [wrapper] pandaids: 6677864215
[2025-06-04 11:06:04] 2025-06-04 06:52:27,931 [wrapper] cleanup supervisor_pilot  9438 22071
[2025-06-04 11:06:04] 2025-06-04 06:52:27,985 [wrapper] Test setup, not cleaning
[2025-06-04 11:06:04] 2025-06-04 06:52:28,054 [wrapper] apfmon messages muted
[2025-06-04 11:06:04] 2025-06-04 06:52:28,172 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:06:04] 2025-06-04 06:52:28,265 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:06:04]  *** Error codes and diagnostics ***
[2025-06-04 11:06:04]     "exeErrorCode": 0,
[2025-06-04 11:06:04]     "exeErrorDiag": "",
[2025-06-04 11:06:04]     "pilotErrorCode": 0,
[2025-06-04 11:06:04]     "pilotErrorDiag": "",
[2025-06-04 11:06:04]  *** Listing of results directory ***
[2025-06-04 11:06:04] total 388444
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:52 queuedata.json
[2025-06-04 11:06:04] -rwx------. 1 boinc boinc     37140 Jun  3 19:53 runpilot2-wrapper.sh
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc       100 Jun  4 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:06:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 04:51 run_atlas
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc       105 Jun  4 04:51 job.xml
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc 214566634 Jun  4 04:51 EVNT.45006593._001643.pool.root.1
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:51 start_atlas.sh
[2025-06-04 11:06:04] drwxrwx--x. 2 boinc boinc        68 Jun  4 04:51 shared
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc    508885 Jun  4 04:51 input.tar.gz
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc      6392 Jun  4 04:51 init_data.xml
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc         0 Jun  4 04:51 boinc_lockfile
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc      2525 Jun  4 04:53 pandaJob.out
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc    986077 Jun  4 04:56 agis_schedconf.cvmfs.json
[2025-06-04 11:06:04] drwx------. 4 boinc boinc      4096 Jun  4 04:56 pilot3
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc 176161135 Jun  4 08:49 HITS.45006595._040996.pool.root.1
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc       531 Jun  4 08:49 boinc_task_state.xml
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc      1018 Jun  4 08:50 memory_monitor_summary.json
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc   1603667 Jun  4 08:50 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc    376933 Jun  4 08:50 log.45006595._040996.job.log.tgz.1
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc        95 Jun  4 08:51 pilot_heartbeat.json
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc      7686 Jun  4 08:52 heartbeat.json
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc      4540 Jun  4 08:52 pilotlog.txt
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc   1227022 Jun  4 08:52 log.45006595._040996.job.log.1
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc       357 Jun  4 08:52 output.list
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc       620 Jun  4 08:52 runtime_log
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc   1628160 Jun  4 08:52 result.tar.gz
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc      8673 Jun  4 08:52 runtime_log.err
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc       657 Jun  4 08:52 C5kNDmF0kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOTlKDmuYdQRn.diag
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:06 boinc_mmap_file
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:06 wrapper_checkpoint.txt
[2025-06-04 11:06:04] -rw-r--r--. 1 boinc boinc     20524 Jun  4 11:06 stderr.txt
[2025-06-04 11:06:04] HITS file was successfully produced:
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc 176161135 Jun  4 08:49 shared/HITS.pool.root.1
[2025-06-04 11:06:04]  *** Contents of shared directory: ***
[2025-06-04 11:06:04] total 383684
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc 214566634 Jun  4 04:51 ATLAS.root_0
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:51 start_atlas.sh
[2025-06-04 11:06:04] -rw-r--r--. 2 boinc boinc    508885 Jun  4 04:51 input.tar.gz
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc 176161135 Jun  4 08:49 HITS.pool.root.1
[2025-06-04 11:06:04] -rw-------. 1 boinc boinc   1628160 Jun  4 08:52 result.tar.gz
11:06:06 (14355): run_atlas exited; CPU time 50233.924914
11:06:06 (14355): called boinc_finish(0)

</stderr_txt>
]]>

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