Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:03:05 (902040): wrapper (7.7.26015): starting
00:03:05 (902040): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 00:03:05] Arguments: --nthreads 12
[2025-06-05 00:03:05] Threads: 12
[2025-06-05 00:03:05] Checking for CVMFS
[2025-06-05 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:03:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:03:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:03:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:03:05] 2.12.7.0 29207 2603 82080 146798 2 59 2482105 4096001 10337 130560 17 34108818 99.999 662946 135 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 00:03:05] CVMFS is ok
[2025-06-05 00:03:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:03:05] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 00:03:05] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 00:03:05] Further information can be found at the LHC@home message board.
[2025-06-05 00:03:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:03:05] Checking for apptainer binary...
[2025-06-05 00:03:05] apptainer is not installed, using version from CVMFS
[2025-06-05 00:03:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:03:06] epyc7v12
[2025-06-05 00:03:06] apptainer works
[2025-06-05 00:03:06] Set ATHENA_PROC_NUMBER=12
[2025-06-05 00:03:06] Set ATHENA_CORE_NUMBER=12
[2025-06-05 00:03:06] Starting ATLAS job with PandaID=6677864144
[2025-06-05 00:03:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:53:31]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:53:31] 2025-06-05 01:53:09,461 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:53:31] 2025-06-05 01:53:11,613 | INFO     | monitor loop #413: job 0:6677864144 is in state 'finished'
[2025-06-05 01:53:31] 2025-06-05 01:53:11,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:53:31] 2025-06-05 01:53:12,156 | INFO     | PID=917303 has CPU usage=18.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:53:31] 2025-06-05 01:53:12,156 | INFO     | .. there are 15 such processes running
[2025-06-05 01:53:31] 2025-06-05 01:53:14,116 | INFO     | monitor loop #414: job 0:6677864144 is in state 'finished'
[2025-06-05 01:53:31] 2025-06-05 01:53:14,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,304 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 01:53:31] 2025-06-05 01:53:14,304 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/9/PanDA_Pilot-6677864144/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,305 | INFO     | extracted standard info from prmon json
[2025-06-05 01:53:31] 2025-06-05 01:53:14,305 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:53:31] 2025-06-05 01:53:14,305 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:53:31] 2025-06-05 01:53:14,305 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:53:31] 2025-06-05 01:53:14,305 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:53:31] 2025-06-05 01:53:14,307 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:53:31] 2025-06-05 01:53:14,307 | INFO     | sum of square deviations: 390582207.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | sum of deviations: 15367632399.999998
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | mean x: 1749085088.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | mean y: 2617267.1296296297
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | -- intersect: -68815921300.83301
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | intersect: -68815921300.83301
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | chi2: 1.230535958263397
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | sum of square deviations: 338804492.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,308 | INFO     | sum of deviations: 14490350530.000002
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | mean x: 1749084936.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | mean y: 2614694.4466019417
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | -- intersect: -74804108438.91321
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | intersect: -74804108438.91321
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | chi2: 1.2322157846210733
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | current chi2=1.2322157846210733 (change=-0.13651176516994598 %)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | right removable region: 102
[2025-06-05 01:53:31] 2025-06-05 01:53:14,309 | INFO     | sum of square deviations: 338804492.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | sum of deviations: 1142170588.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | mean x: 1749085241.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | mean y: 2658095.2427184465
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | -- intersect: -5893821335.6589575
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | intersect: -5893821335.6589575
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | chi2: 0.0004759215252183584
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | current chi2=0.0004759215252183584 (change=99.96132404567112 %)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,310 | INFO     | sum of square deviations: 291817564.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | sum of deviations: 902299159.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | mean x: 1749085393.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | mean y: 2658862.3571428573
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | -- intersect: -5405508679.418009
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | intersect: -5405508679.418009
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | chi2: 0.0004002072606341592
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | current chi2=0.0004002072606341592 (change=15.908980908031134 %)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,311 | INFO     | left removable region: 20
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | sum of square deviations: 170944600.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | sum of deviations: 508406696.0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | mean x: 1749085515.5
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | mean y: 2659147.2195121953
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | -- intersect: -5199299764.356709
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | intersect: -5199299764.356709
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | chi2: 0.00012532680128389138
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | -- intersect: -5199299764.356709
[2025-06-05 01:53:31] 2025-06-05 01:53:14,312 | INFO     | current memory leak: 2.97 B/s (using 82 data points, chi2=0.00)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | ..............................
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . Timing measurements:
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . get job = 0 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . initial setup = 1 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . payload setup = 7 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . stage-in = 0 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . payload execution = 6561 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . stage-out = 1 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | . log creation = 0 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,313 | INFO     | ..............................
[2025-06-05 01:53:31] 2025-06-05 01:53:14,383 | INFO     | 
[2025-06-05 01:53:31] 2025-06-05 01:53:14,383 | INFO     | job summary report
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | --------------------------------------------------
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | PanDA job id: 6677864144
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | task id: 45006595
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | errors: (none)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | pilot state: finished 
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | transexitcode: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | exeerrorcode: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | exeerrordiag: 
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | exitcode: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,384 | INFO     | exitmsg: OK
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | cpuconsumptiontime: 40646 s
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | nevents: 400
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | neventsw: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | pid: 974000
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | pgrp: 974000
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | corecount: 12
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | event service: False
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | sizes: {0: 2397138, 1: 2397393, 6: 2397599, 11: 2397627, 6573: 2424725, 6575: 2433712, 6577: 2433896, 6582: 2434066}
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | --------------------------------------------------
[2025-06-05 01:53:31] 2025-06-05 01:53:14,385 | INFO     | 
[2025-06-05 01:53:31] 2025-06-05 01:53:14,386 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/9
[2025-06-05 01:53:31] 2025-06-05 01:53:14,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,412 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:53:31] 2025-06-05 01:53:14,413 | INFO     | job 6677864144 has completed (purged errors)
[2025-06-05 01:53:31] 2025-06-05 01:53:14,413 | INFO     | overall cleanup function is called
[2025-06-05 01:53:31] 2025-06-05 01:53:15,421 | INFO     | --- collectZombieJob: --- 10, [974000]
[2025-06-05 01:53:31] 2025-06-05 01:53:15,422 | INFO     | zombie collector waiting for pid 974000
[2025-06-05 01:53:31] 2025-06-05 01:53:15,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:53:31] 2025-06-05 01:53:15,422 | INFO     | collected zombie processes
[2025-06-05 01:53:31] 2025-06-05 01:53:15,422 | INFO     | will attempt to kill all subprocesses of pid=974000
[2025-06-05 01:53:31] 2025-06-05 01:53:15,920 | INFO     | process IDs to be killed: [974000] (in reverse order)
[2025-06-05 01:53:31] 2025-06-05 01:53:16,090 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:53:31] 2025-06-05 01:53:16,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:53:31] 2025-06-05 01:53:16,105 | INFO     | did not find any defunct processes belonging to 974000
[2025-06-05 01:53:31] 2025-06-05 01:53:16,119 | INFO     | did not find any defunct processes belonging to 974000
[2025-06-05 01:53:31] 2025-06-05 01:53:16,119 | INFO     | ready for new job
[2025-06-05 01:53:31] 2025-06-05 01:53:16,119 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:53:31] 2025-06-05 01:53:16,121 | INFO     | **************************************
[2025-06-05 01:53:31] 2025-06-05 01:53:16,121 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:53:31] 2025-06-05 01:53:16,121 | INFO     | **************************************
[2025-06-05 01:53:31] 2025-06-05 01:53:16,121 | INFO     | 
[2025-06-05 01:53:31] 2025-06-05 01:53:16,155 | INFO     | architecture information:
[2025-06-05 01:53:31] 2025-06-05 01:53:16,155 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:53:31] 2025-06-05 01:53:16,174 | INFO     | cat /etc/os-release:
[2025-06-05 01:53:31] NAME="CentOS Linux"
[2025-06-05 01:53:31] VERSION="7 (Core)"
[2025-06-05 01:53:31] ID="centos"
[2025-06-05 01:53:31] ID_LIKE="rhel fedora"
[2025-06-05 01:53:31] VERSION_ID="7"
[2025-06-05 01:53:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:53:31] ANSI_COLOR="0;31"
[2025-06-05 01:53:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:53:31] HOME_URL="https://www.centos.org/"
[2025-06-05 01:53:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:53:31] 
[2025-06-05 01:53:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:53:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:53:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:53:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:53:31] 
[2025-06-05 01:53:31] 2025-06-05 01:53:16,175 | INFO     | **************************************
[2025-06-05 01:53:31] 2025-06-05 01:53:16,678 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/9
[2025-06-05 01:53:31] 2025-06-05 01:53:16,699 | INFO     | sufficient remaining disk space (336122085376 B)
[2025-06-05 01:53:31] 2025-06-05 01:53:16,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:53:31] 2025-06-05 01:53:16,699 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:53:31] 2025-06-05 01:53:16,699 | INFO     | update_server=False
[2025-06-05 01:53:31] 2025-06-05 01:53:16,699 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:53:31] 2025-06-05 01:53:16,700 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:53:31] 2025-06-05 01:53:16,700 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:53:31] 2025-06-05 01:53:16,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:53:31] 2025-06-05 01:53:16,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:53:31] 2025-06-05 01:53:16,867 | INFO     | all data control threads have been joined
[2025-06-05 01:53:31] 2025-06-05 01:53:17,227 | INFO     | all job control threads have been joined
[2025-06-05 01:53:31] 2025-06-05 01:53:17,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:53:31] 2025-06-05 01:53:17,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:53:31] 2025-06-05 01:53:17,625 | INFO     | aborting loop
[2025-06-05 01:53:31] 2025-06-05 01:53:17,701 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:17,839 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:17,872 | INFO     | [data] control thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:17,890 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:18,065 | INFO     | all payload control threads have been joined
[2025-06-05 01:53:31] 2025-06-05 01:53:18,232 | INFO     | [job] control thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:18,570 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:18,631 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:18,632 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:18,708 | INFO     | [job] validate thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,049 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,070 | INFO     | [payload] control thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,149 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,193 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:53:31] 2025-06-05 01:53:19,581 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:19,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:53:31] 2025-06-05 01:53:20,393 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:23,816 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:53:31] 2025-06-05 01:53:25,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140323492624192)>', '<ExcThread(monitor, started 140323057547008)>']
[2025-06-05 01:53:31] 2025-06-05 01:53:25,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:53:31] 2025-06-05 01:53:25,742 | INFO     | [monitor] control thread has ended
[2025-06-05 01:53:31] 2025-06-05 01:53:30,718 | INFO     | all workflow threads have been joined
[2025-06-05 01:53:31] 2025-06-05 01:53:30,718 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:53:31] 2025-06-05 01:53:30,719 | INFO     | traces error code: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:30,719 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:53:31] 2025-06-05 01:53:30,859 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:53:31] 2025-06-05 01:53:30,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:53:31] 2025-06-05 01:53:30,866 [wrapper] pilotpid: 917303
[2025-06-05 01:53:31] 2025-06-05 01:53:30,869 [wrapper] Pilot exit status: 0
[2025-06-05 01:53:31] 2025-06-05 01:53:30,880 [wrapper] pandaids: 6677864144
[2025-06-05 01:53:31] 2025-06-05 01:53:30,982 [wrapper] cleanup supervisor_pilot 1440756 917304
[2025-06-05 01:53:31] 2025-06-05 01:53:30,988 [wrapper] Test setup, not cleaning
[2025-06-05 01:53:31] 2025-06-05 01:53:30,991 [wrapper] apfmon messages muted
[2025-06-05 01:53:31] 2025-06-05 01:53:30,994 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:53:31] 2025-06-05 01:53:30,997 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:53:31]  *** Error codes and diagnostics ***
[2025-06-05 01:53:31]     "exeErrorCode": 0,
[2025-06-05 01:53:31]     "exeErrorDiag": "",
[2025-06-05 01:53:31]     "pilotErrorCode": 0,
[2025-06-05 01:53:31]     "pilotErrorDiag": "",
[2025-06-05 01:53:31]  *** Listing of results directory ***
[2025-06-05 01:53:31] total 388944
[2025-06-05 01:53:31] -rw-r--r-- 1 boinc boinc    495897 Jun  3 17:46 pilot3.tar.gz
[2025-06-05 01:53:31] -rwx------ 1 boinc boinc     37140 Jun  3 17:50 runpilot2-wrapper.sh
[2025-06-05 01:53:31] -rw-r--r-- 1 boinc boinc      5111 Jun  3 17:50 queuedata.json
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc       100 Jun  5 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:53:31] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:03 run_atlas
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc       105 Jun  5 00:03 job.xml
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc 212981979 Jun  5 00:03 EVNT.45006593._001640.pool.root.1
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:03 start_atlas.sh
[2025-06-05 01:53:31] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:03 shared
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc    508881 Jun  5 00:03 input.tar.gz
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc      6932 Jun  5 00:03 init_data.xml
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc         0 Jun  5 00:03 boinc_lockfile
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 00:03 pandaJob.out
[2025-06-05 01:53:31] -rw------- 1 boinc boinc    987117 Jun  5 00:03 agis_schedconf.cvmfs.json
[2025-06-05 01:53:31] -rw------- 1 boinc boinc   1598969 Jun  5 00:03 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:53:31] drwx------ 4 boinc boinc      4096 Jun  5 00:03 pilot3
[2025-06-05 01:53:31] -rw------- 1 boinc boinc        95 Jun  5 01:52 pilot_heartbeat.json
[2025-06-05 01:53:31] -rw------- 1 boinc boinc 179538903 Jun  5 01:52 HITS.45006595._040925.pool.root.1
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc       530 Jun  5 01:52 boinc_task_state.xml
[2025-06-05 01:53:31] -rw------- 1 boinc boinc      1021 Jun  5 01:53 memory_monitor_summary.json
[2025-06-05 01:53:31] -rw------- 1 boinc boinc    371781 Jun  5 01:53 log.45006595._040925.job.log.tgz.1
[2025-06-05 01:53:31] -rw------- 1 boinc boinc      7643 Jun  5 01:53 heartbeat.json
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc        27 Jun  5 01:53 wrapper_checkpoint.txt
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 01:53 boinc_mmap_file
[2025-06-05 01:53:31] -rw------- 1 boinc boinc      4500 Jun  5 01:53 pilotlog.txt
[2025-06-05 01:53:31] -rw------- 1 boinc boinc    591373 Jun  5 01:53 log.45006595._040925.job.log.1
[2025-06-05 01:53:31] -rw------- 1 boinc boinc       357 Jun  5 01:53 output.list
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc       620 Jun  5 01:53 runtime_log
[2025-06-05 01:53:31] -rw------- 1 boinc boinc    983040 Jun  5 01:53 result.tar.gz
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc      8963 Jun  5 01:53 runtime_log.err
[2025-06-05 01:53:31] -rw------- 1 boinc boinc       651 Jun  5 01:53 qIqNDmJxkg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3RlKDmmktPUm.diag
[2025-06-05 01:53:31] -rw-rw-r-- 1 boinc boinc     21442 Jun  5 01:53 stderr.txt
[2025-06-05 01:53:31] HITS file was successfully produced:
[2025-06-05 01:53:31] -rw------- 1 boinc boinc 179538903 Jun  5 01:52 shared/HITS.pool.root.1
[2025-06-05 01:53:31]  *** Contents of shared directory: ***
[2025-06-05 01:53:31] total 384808
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc 212981979 Jun  5 00:03 ATLAS.root_0
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:03 start_atlas.sh
[2025-06-05 01:53:31] -rw-r--r-- 2 boinc boinc    508881 Jun  5 00:03 input.tar.gz
[2025-06-05 01:53:31] -rw------- 1 boinc boinc 179538903 Jun  5 01:52 HITS.pool.root.1
[2025-06-05 01:53:31] -rw------- 1 boinc boinc    983040 Jun  5 01:53 result.tar.gz
01:53:32 (902040): run_atlas exited; CPU time 40961.164274
01:53:32 (902040): called boinc_finish(0)

</stderr_txt>
]]>

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