Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:03:42 (980220): wrapper (7.7.26015): starting
00:03:42 (980220): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 00:03:42] Arguments: --nthreads 12
[2025-06-05 00:03:42] Threads: 12
[2025-06-05 00:03:42] Checking for CVMFS
[2025-06-05 00:03:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:03:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:03:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:03:43] 2.12.7.0 29207 2604 82972 146798 1 186 2482105 4096001 7288 130560 17 34300856 99.999 662946 135 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 00:03:43] CVMFS is ok
[2025-06-05 00:03:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:03:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 00:03:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 00:03:43] Further information can be found at the LHC@home message board.
[2025-06-05 00:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:03:43] Checking for apptainer binary...
[2025-06-05 00:03:43] apptainer is not installed, using version from CVMFS
[2025-06-05 00:03:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:03:43] epyc7v12
[2025-06-05 00:03:43] apptainer works
[2025-06-05 00:03:43] Set ATHENA_PROC_NUMBER=12
[2025-06-05 00:03:43] Set ATHENA_CORE_NUMBER=12
[2025-06-05 00:03:43] Starting ATLAS job with PandaID=6677782156
[2025-06-05 00:03:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:55:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:55:20] 2025-06-05 01:55:00,014 | INFO     | intersect: -8512867028.798509
[2025-06-05 01:55:20] 2025-06-05 01:55:00,014 | INFO     | chi2: 0.00041986440423454844
[2025-06-05 01:55:20] 2025-06-05 01:55:00,014 | INFO     | current chi2=0.00041986440423454844 (change=29.914535835552968 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,014 | INFO     | sum of square deviations: 218570930.98876375
[2025-06-05 01:55:20] 2025-06-05 01:55:00,014 | INFO     | sum of deviations: 824848482.7528089
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | mean x: 1749085767.011236
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | mean y: 2645814.2471910114
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | -- intersect: -6598098093.4498415
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | intersect: -6598098093.4498415
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | chi2: 0.0001698130045802804
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | current chi2=0.0001698130045802804 (change=59.55527478213707 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | sum of square deviations: 183760670.9880953
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | sum of deviations: 550335512.9285715
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | mean x: 1749085919.5119047
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | mean y: 2647011.0714285714
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | -- intersect: -5235601693.043752
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | intersect: -5235601693.043752
[2025-06-05 01:55:20] 2025-06-05 01:55:00,015 | INFO     | chi2: 6.161278489320226e-05
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | current chi2=6.161278489320226e-05 (change=63.71727533737008 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | sum of square deviations: 152857460.98734194
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | sum of deviations: 394382267.82278484
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | mean x: 1749086072.012658
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | mean y: 2647778.1772151897
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | -- intersect: -4510108924.975937
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | intersect: -4510108924.975937
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | chi2: 3.7373353455182206e-05
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | current chi2=3.7373353455182206e-05 (change=39.34156113870839 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | sum of square deviations: 125628738.48648632
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | sum of deviations: 285070756.7297297
[2025-06-05 01:55:20] 2025-06-05 01:55:00,016 | INFO     | mean x: 1749086224.5135136
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | mean y: 2648387.2702702703
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | -- intersect: -3966294862.615569
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | intersect: -3966294862.615569
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | chi2: 2.5824697227963104e-05
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | current chi2=2.5824697227963104e-05 (change=30.90077597951746 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | sum of square deviations: 101841940.9855073
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | sum of deviations: 217191293.826087
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | mean x: 1749086377.0144928
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | mean y: 2648819.1739130435
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | -- intersect: -3727507239.92379
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | intersect: -3727507239.92379
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | chi2: 2.299016366733628e-05
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | current chi2=2.299016366733628e-05 (change=10.97605728193234 %)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,017 | INFO     | left removable region: 80
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | sum of square deviations: 3765652.0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | sum of deviations: 819901.0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | mean x: 1749087414.0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | mean y: 2650009.1304347827
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | -- intersect: -378181390.0073544
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | intersect: -378181390.0073544
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | chi2: 1.0667182505454967e-07
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | -- intersect: -378181390.0073544
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | current memory leak: 0.22 B/s (using 23 data points, chi2=0.00)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | ..............................
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . Timing measurements:
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . get job = 0 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . initial setup = 1 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . payload setup = 7 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . stage-in = 0 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,018 | INFO     | . payload execution = 6631 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,019 | INFO     | . stage-out = 0 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,019 | INFO     | . log creation = 0 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,019 | INFO     | ..............................
[2025-06-05 01:55:20] 2025-06-05 01:55:00,074 | INFO     | 
[2025-06-05 01:55:20] 2025-06-05 01:55:00,074 | INFO     | job summary report
[2025-06-05 01:55:20] 2025-06-05 01:55:00,074 | INFO     | --------------------------------------------------
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | PanDA job id: 6677782156
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | task id: 45006595
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | errors: (none)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | pilot state: finished 
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | transexitcode: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | exeerrorcode: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | exeerrordiag: 
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | exitcode: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,075 | INFO     | exitmsg: OK
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | cpuconsumptiontime: 40483 s
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | nevents: 400
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | neventsw: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | pid: 1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | pgrp: 1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | corecount: 12
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | event service: False
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | sizes: {0: 2397365, 5: 2397571, 11: 2397627, 6642: 2424726, 6643: 2433713, 6644: 2433769, 6650: 2434067}
[2025-06-05 01:55:20] 2025-06-05 01:55:00,076 | INFO     | --------------------------------------------------
[2025-06-05 01:55:20] 2025-06-05 01:55:00,077 | INFO     | 
[2025-06-05 01:55:20] 2025-06-05 01:55:00,077 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/6
[2025-06-05 01:55:20] 2025-06-05 01:55:00,102 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | job 6677782156 has completed (purged errors)
[2025-06-05 01:55:20] 2025-06-05 01:55:00,105 | INFO     | overall cleanup function is called
[2025-06-05 01:55:20] 2025-06-05 01:55:01,115 | INFO     | --- collectZombieJob: --- 10, [1077181]
[2025-06-05 01:55:20] 2025-06-05 01:55:01,116 | INFO     | zombie collector waiting for pid 1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:01,116 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:55:20] 2025-06-05 01:55:01,116 | INFO     | collected zombie processes
[2025-06-05 01:55:20] 2025-06-05 01:55:01,116 | INFO     | will attempt to kill all subprocesses of pid=1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:01,350 | INFO     | process IDs to be killed: [1077181] (in reverse order)
[2025-06-05 01:55:20] 2025-06-05 01:55:01,452 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:55:20] 2025-06-05 01:55:01,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:55:20] 2025-06-05 01:55:01,463 | INFO     | did not find any defunct processes belonging to 1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:01,470 | INFO     | did not find any defunct processes belonging to 1077181
[2025-06-05 01:55:20] 2025-06-05 01:55:01,470 | INFO     | ready for new job
[2025-06-05 01:55:20] 2025-06-05 01:55:01,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:55:20] 2025-06-05 01:55:01,471 | INFO     | **************************************
[2025-06-05 01:55:20] 2025-06-05 01:55:01,471 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:55:20] 2025-06-05 01:55:01,471 | INFO     | **************************************
[2025-06-05 01:55:20] 2025-06-05 01:55:01,471 | INFO     | 
[2025-06-05 01:55:20] 2025-06-05 01:55:01,497 | INFO     | architecture information:
[2025-06-05 01:55:20] 2025-06-05 01:55:01,497 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:55:20] 2025-06-05 01:55:01,515 | INFO     | cat /etc/os-release:
[2025-06-05 01:55:20] NAME="CentOS Linux"
[2025-06-05 01:55:20] VERSION="7 (Core)"
[2025-06-05 01:55:20] ID="centos"
[2025-06-05 01:55:20] ID_LIKE="rhel fedora"
[2025-06-05 01:55:20] VERSION_ID="7"
[2025-06-05 01:55:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:55:20] ANSI_COLOR="0;31"
[2025-06-05 01:55:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:55:20] HOME_URL="https://www.centos.org/"
[2025-06-05 01:55:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:55:20] 
[2025-06-05 01:55:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:55:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:55:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:55:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:55:20] 
[2025-06-05 01:55:20] 2025-06-05 01:55:01,517 | INFO     | **************************************
[2025-06-05 01:55:20] 2025-06-05 01:55:02,020 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/6
[2025-06-05 01:55:20] 2025-06-05 01:55:02,040 | INFO     | sufficient remaining disk space (337440145408 B)
[2025-06-05 01:55:20] 2025-06-05 01:55:02,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:55:20] 2025-06-05 01:55:02,041 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:55:20] 2025-06-05 01:55:02,041 | INFO     | update_server=False
[2025-06-05 01:55:20] 2025-06-05 01:55:02,041 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:55:20] 2025-06-05 01:55:02,042 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:55:20] 2025-06-05 01:55:02,090 | INFO     | PID=998500 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:55:20] 2025-06-05 01:55:02,091 | INFO     | .. there are 7 such processes running
[2025-06-05 01:55:20] 2025-06-05 01:55:02,091 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:55:20] 2025-06-05 01:55:02,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:55:20] 2025-06-05 01:55:02,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:55:20] 2025-06-05 01:55:02,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 01:55:20] 2025-06-05 01:55:02,192 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 01:55:20] 2025-06-05 01:55:02,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:55:20] 2025-06-05 01:55:02,192 | INFO     | will abort loop
[2025-06-05 01:55:20] 2025-06-05 01:55:02,488 | INFO     | all job control threads have been joined
[2025-06-05 01:55:20] 2025-06-05 01:55:02,694 | INFO     | all payload control threads have been joined
[2025-06-05 01:55:20] 2025-06-05 01:55:02,813 | INFO     | all data control threads have been joined
[2025-06-05 01:55:20] 2025-06-05 01:55:03,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:55:20] 2025-06-05 01:55:03,047 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,047 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,062 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,076 | INFO     | [job] validate thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,193 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,298 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,360 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,366 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,494 | INFO     | [job] control thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,611 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,700 | INFO     | [payload] control thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:03,819 | INFO     | [data] control thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:04,137 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:04,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:55:20] 2025-06-05 01:55:05,025 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:08,542 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:12,539 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:55:20] 2025-06-05 01:55:13,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:55:20] 2025-06-05 01:55:14,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902193342272)>', '<ExcThread(monitor, started 139901748098816)>']
[2025-06-05 01:55:20] 2025-06-05 01:55:15,152 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:55:20] 2025-06-05 01:55:15,152 | INFO     | [monitor] control thread has ended
[2025-06-05 01:55:20] 2025-06-05 01:55:19,872 | INFO     | all workflow threads have been joined
[2025-06-05 01:55:20] 2025-06-05 01:55:19,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:55:20] 2025-06-05 01:55:19,872 | INFO     | traces error code: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:19,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:55:20] 2025-06-05 01:55:19,950 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:55:20] 2025-06-05 01:55:19,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:55:20] 2025-06-05 01:55:19,959 [wrapper] pilotpid: 998500
[2025-06-05 01:55:20] 2025-06-05 01:55:19,963 [wrapper] Pilot exit status: 0
[2025-06-05 01:55:20] 2025-06-05 01:55:19,975 [wrapper] pandaids: 6677782156
[2025-06-05 01:55:20] 2025-06-05 01:55:20,041 [wrapper] cleanup supervisor_pilot 1440845 998501
[2025-06-05 01:55:20] 2025-06-05 01:55:20,046 [wrapper] Test setup, not cleaning
[2025-06-05 01:55:20] 2025-06-05 01:55:20,050 [wrapper] apfmon messages muted
[2025-06-05 01:55:20] 2025-06-05 01:55:20,054 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:55:20] 2025-06-05 01:55:20,058 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:55:20]  *** Error codes and diagnostics ***
[2025-06-05 01:55:20]     "exeErrorCode": 0,
[2025-06-05 01:55:20]     "exeErrorDiag": "",
[2025-06-05 01:55:20]     "pilotErrorCode": 0,
[2025-06-05 01:55:20]     "pilotErrorDiag": "",
[2025-06-05 01:55:20]  *** Listing of results directory ***
[2025-06-05 01:55:20] total 394060
[2025-06-05 01:55:20] -rw-r--r-- 1 boinc boinc    495897 Jun  3 16:03 pilot3.tar.gz
[2025-06-05 01:55:20] -rw-r--r-- 1 boinc boinc      5111 Jun  3 16:27 queuedata.json
[2025-06-05 01:55:20] -rwx------ 1 boinc boinc     37140 Jun  3 16:27 runpilot2-wrapper.sh
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc       100 Jun  5 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:55:20] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:03 run_atlas
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc       105 Jun  5 00:03 job.xml
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:03 start_atlas.sh
[2025-06-05 01:55:20] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:03 shared
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc    508885 Jun  5 00:03 input.tar.gz
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc      6932 Jun  5 00:03 init_data.xml
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc 216175141 Jun  5 00:03 EVNT.45006593._001552.pool.root.1
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc         0 Jun  5 00:03 boinc_lockfile
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 00:03 pandaJob.out
[2025-06-05 01:55:20] -rw------- 1 boinc boinc    987117 Jun  5 00:03 agis_schedconf.cvmfs.json
[2025-06-05 01:55:20] -rw------- 1 boinc boinc   1598969 Jun  5 00:03 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:55:20] drwx------ 4 boinc boinc      4096 Jun  5 00:03 pilot3
[2025-06-05 01:55:20] -rw------- 1 boinc boinc        95 Jun  5 01:54 pilot_heartbeat.json
[2025-06-05 01:55:20] -rw------- 1 boinc boinc 181518585 Jun  5 01:54 HITS.45006595._038700.pool.root.1
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc       530 Jun  5 01:54 boinc_task_state.xml
[2025-06-05 01:55:20] -rw------- 1 boinc boinc      1021 Jun  5 01:54 memory_monitor_summary.json
[2025-06-05 01:55:20] -rw------- 1 boinc boinc    385142 Jun  5 01:54 log.45006595._038700.job.log.tgz.1
[2025-06-05 01:55:20] -rw------- 1 boinc boinc      7645 Jun  5 01:55 heartbeat.json
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 01:55 boinc_mmap_file
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc        27 Jun  5 01:55 wrapper_checkpoint.txt
[2025-06-05 01:55:20] -rw------- 1 boinc boinc      5029 Jun  5 01:55 pilotlog.txt
[2025-06-05 01:55:20] -rw------- 1 boinc boinc    605214 Jun  5 01:55 log.45006595._038700.job.log.1
[2025-06-05 01:55:20] -rw------- 1 boinc boinc       357 Jun  5 01:55 output.list
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc       620 Jun  5 01:55 runtime_log
[2025-06-05 01:55:20] -rw------- 1 boinc boinc   1013760 Jun  5 01:55 result.tar.gz
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc      8963 Jun  5 01:55 runtime_log.err
[2025-06-05 01:55:20] -rw------- 1 boinc boinc       651 Jun  5 01:55 5ibNDmRfjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS3kKDm106ENm.diag
[2025-06-05 01:55:20] -rw-rw-r-- 1 boinc boinc     21168 Jun  5 01:55 stderr.txt
[2025-06-05 01:55:20] HITS file was successfully produced:
[2025-06-05 01:55:20] -rw------- 1 boinc boinc 181518585 Jun  5 01:54 shared/HITS.pool.root.1
[2025-06-05 01:55:20]  *** Contents of shared directory: ***
[2025-06-05 01:55:20] total 389896
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:03 start_atlas.sh
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc    508885 Jun  5 00:03 input.tar.gz
[2025-06-05 01:55:20] -rw-r--r-- 2 boinc boinc 216175141 Jun  5 00:03 ATLAS.root_0
[2025-06-05 01:55:20] -rw------- 1 boinc boinc 181518585 Jun  5 01:54 HITS.pool.root.1
[2025-06-05 01:55:20] -rw------- 1 boinc boinc   1013760 Jun  5 01:55 result.tar.gz
01:55:21 (980220): run_atlas exited; CPU time 40814.620780
01:55:21 (980220): called boinc_finish(0)

</stderr_txt>
]]>

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