Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:03:35 (18523): wrapper (7.7.26015): starting
07:03:35 (18523): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:03:35] Arguments: --nthreads 8
[2025-06-04 07:03:35] Threads: 8
[2025-06-04 07:03:35] Checking for CVMFS
[2025-06-04 07:03:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:03:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:03:39] 2.11.2.0 31392 32776 95916 146768 3 69 14842341 25165825 3519 130560 0 17398906 99.758 20431281 2061 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 07:03:39] CVMFS is ok
[2025-06-04 07:03:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:03:39] Checking for apptainer binary...
[2025-06-04 07:03:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:03:39] Running /usr/bin/apptainer --version
[2025-06-04 07:03:39] apptainer version 1.3.2-1.el7
[2025-06-04 07:03:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:14:44] cg-vwn267.simple-grid.lan
[2025-06-04 07:14:44] apptainer works
[2025-06-04 07:14:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:14:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:14:44] Starting ATLAS job with PandaID=6677677422
[2025-06-04 07:14:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:14:00]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:14:00] 2025-06-04 09:12:35,636 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:14:00] 2025-06-04 09:12:35,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:14:00] 2025-06-04 09:12:35,641 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:14:00] 2025-06-04 09:12:35,642 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | sum of deviations: 26677355578.000015
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | mean x: 1749021482.5
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | mean y: 2464732.3333333335
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | -- intersect: -13750913479.917408
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | intersect: -13750913479.917408
[2025-06-04 11:14:00] 2025-06-04 09:12:35,644 | INFO     | chi2: 5.583129929404534
[2025-06-04 11:14:00] 2025-06-04 09:12:35,645 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,647 | INFO     | sum of deviations: 40872298967.99998
[2025-06-04 11:14:00] 2025-06-04 09:12:35,647 | INFO     | mean x: 1749021330.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,647 | INFO     | mean y: 2474210.271889401
[2025-06-04 11:14:00] 2025-06-04 09:12:35,647 | INFO     | -- intersect: -22559430971.637676
[2025-06-04 11:14:00] 2025-06-04 09:12:35,647 | INFO     | intersect: -22559430971.637676
[2025-06-04 11:14:00] 2025-06-04 09:12:35,648 | INFO     | chi2: 4.861529792641064
[2025-06-04 11:14:00] 2025-06-04 09:12:35,648 | INFO     | current chi2=4.861529792641064 (change=12.924652406225343 %)
[2025-06-04 11:14:00] 2025-06-04 09:12:35,648 | INFO     | right removable region: 216
[2025-06-04 11:14:00] 2025-06-04 09:12:35,648 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,650 | INFO     | sum of deviations: -45233399784.00001
[2025-06-04 11:14:00] 2025-06-04 09:12:35,650 | INFO     | mean x: 1749021635.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,650 | INFO     | mean y: 2513579.129032258
[2025-06-04 11:14:00] 2025-06-04 09:12:35,650 | INFO     | -- intersect: 24971793035.32352
[2025-06-04 11:14:00] 2025-06-04 09:12:35,651 | INFO     | intersect: 24971793035.32352
[2025-06-04 11:14:00] 2025-06-04 09:12:35,651 | INFO     | chi2: 1.432378735955856
[2025-06-04 11:14:00] 2025-06-04 09:12:35,651 | INFO     | current chi2=1.432378735955856 (change=74.34452083208771 %)
[2025-06-04 11:14:00] 2025-06-04 09:12:35,651 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,653 | INFO     | sum of deviations: -62779462903.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,653 | INFO     | mean x: 1749021787.5
[2025-06-04 11:14:00] 2025-06-04 09:12:35,653 | INFO     | mean y: 2525955.5566037735
[2025-06-04 11:14:00] 2025-06-04 09:12:35,653 | INFO     | -- intersect: 37167725739.63112
[2025-06-04 11:14:00] 2025-06-04 09:12:35,654 | INFO     | intersect: 37167725739.63112
[2025-06-04 11:14:00] 2025-06-04 09:12:35,654 | INFO     | chi2: 0.9795272948679953
[2025-06-04 11:14:00] 2025-06-04 09:12:35,654 | INFO     | current chi2=0.9795272948679953 (change=31.615342347683175 %)
[2025-06-04 11:14:00] 2025-06-04 09:12:35,654 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,656 | INFO     | sum of deviations: -56910322222.00001
[2025-06-04 11:14:00] 2025-06-04 09:12:35,656 | INFO     | mean x: 1749021940.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,656 | INFO     | mean y: 2521565.9855072466
[2025-06-04 11:14:00] 2025-06-04 09:12:35,656 | INFO     | -- intersect: 36194054385.40528
[2025-06-04 11:14:00] 2025-06-04 09:12:35,656 | INFO     | intersect: 36194054385.40528
[2025-06-04 11:14:00] 2025-06-04 09:12:35,657 | INFO     | chi2: 0.9762082320516807
[2025-06-04 11:14:00] 2025-06-04 09:12:35,657 | INFO     | current chi2=0.9762082320516807 (change=0.3388433210288279 %)
[2025-06-04 11:14:00] 2025-06-04 09:12:35,657 | INFO     | left removable region: 30
[2025-06-04 11:14:00] 2025-06-04 09:12:35,657 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | sum of deviations: -21490242843.0
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | mean x: 1749022214.5
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | mean y: 2515635.075268817
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | -- intersect: 18840392141.548565
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | intersect: 18840392141.548565
[2025-06-04 11:14:00] 2025-06-04 09:12:35,659 | INFO     | chi2: 0.13745059932151749
[2025-06-04 11:14:00] 2025-06-04 09:12:35,660 | INFO     | -- intersect: 18840392141.548565
[2025-06-04 11:14:00] 2025-06-04 09:12:35,660 | INFO     | current memory leak: -10.77 B/s (using 186 data points, chi2=0.14)
[2025-06-04 11:14:00] 2025-06-04 09:12:35,660 | INFO     | ..............................
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . Timing measurements:
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . get job = 0 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . initial setup = 2 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . payload setup = 166 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . stage-in = 0 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . payload execution = 13677 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . stage-out = 2 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,661 | INFO     | . log creation = 0 s
[2025-06-04 11:14:00] 2025-06-04 09:12:35,662 | INFO     | ..............................
[2025-06-04 11:14:00] 2025-06-04 09:12:36,056 | INFO     | 
[2025-06-04 11:14:00] 2025-06-04 09:12:36,056 | INFO     | job summary report
[2025-06-04 11:14:00] 2025-06-04 09:12:36,056 | INFO     | --------------------------------------------------
[2025-06-04 11:14:00] 2025-06-04 09:12:36,056 | INFO     | PanDA job id: 6677677422
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | task id: 45006595
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | errors: (none)
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | pilot state: finished 
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | transexitcode: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | exeerrorcode: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | exeerrordiag: 
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | exitcode: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | exitmsg: OK
[2025-06-04 11:14:00] 2025-06-04 09:12:36,057 | INFO     | cpuconsumptiontime: 49571 s
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | nevents: 400
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | neventsw: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | pid: 8928
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | pgrp: 8928
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | corecount: 8
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | event service: False
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 83: 2405798, 87: 2405854, 13847: 2435868
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | --------------------------------------------------
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | 
[2025-06-04 11:14:00] 2025-06-04 09:12:36,058 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 11:14:00] 2025-06-04 09:12:36,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,423 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:14:00] 2025-06-04 09:12:36,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:14:00] 2025-06-04 09:12:36,424 | INFO     | job 6677677422 has completed (purged errors)
[2025-06-04 11:14:00] 2025-06-04 09:12:36,424 | INFO     | overall cleanup function is called
[2025-06-04 11:14:00] 2025-06-04 09:12:37,433 | INFO     | --- collectZombieJob: --- 10, [8928]
[2025-06-04 11:14:00] 2025-06-04 09:12:37,433 | INFO     | zombie collector waiting for pid 8928
[2025-06-04 11:14:00] 2025-06-04 09:12:37,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:14:00] 2025-06-04 09:12:37,434 | INFO     | collected zombie processes
[2025-06-04 11:14:00] 2025-06-04 09:12:37,434 | INFO     | will attempt to kill all subprocesses of pid=8928
[2025-06-04 11:14:00] 2025-06-04 09:12:37,597 | INFO     | process IDs to be killed: [8928] (in reverse order)
[2025-06-04 11:14:00] 2025-06-04 09:12:37,986 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:14:00] 2025-06-04 09:12:37,986 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:14:00] 2025-06-04 09:12:37,990 | INFO     | did not find any defunct processes belonging to 8928
[2025-06-04 11:14:00] 2025-06-04 09:12:37,993 | INFO     | did not find any defunct processes belonging to 8928
[2025-06-04 11:14:00] 2025-06-04 09:12:37,994 | INFO     | ready for new job
[2025-06-04 11:14:00] 2025-06-04 09:12:37,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:14:00] 2025-06-04 09:12:38,004 | INFO     | **************************************
[2025-06-04 11:14:00] 2025-06-04 09:12:38,005 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:14:00] 2025-06-04 09:12:38,005 | INFO     | **************************************
[2025-06-04 11:14:00] 2025-06-04 09:12:38,005 | INFO     | 
[2025-06-04 11:14:00] 2025-06-04 09:12:38,005 | INFO     | pilot is running in a VM
[2025-06-04 11:14:00] 2025-06-04 09:12:38,006 | INFO     | architecture information:
[2025-06-04 11:14:00] 2025-06-04 09:12:38,014 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:14:00] 2025-06-04 09:12:38,131 | INFO     | cat /etc/os-release:
[2025-06-04 11:14:00] NAME="CentOS Linux"
[2025-06-04 11:14:00] VERSION="7 (Core)"
[2025-06-04 11:14:00] ID="centos"
[2025-06-04 11:14:00] ID_LIKE="rhel fedora"
[2025-06-04 11:14:00] VERSION_ID="7"
[2025-06-04 11:14:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:14:00] ANSI_COLOR="0;31"
[2025-06-04 11:14:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:14:00] HOME_URL="https://www.centos.org/"
[2025-06-04 11:14:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:14:00] 
[2025-06-04 11:14:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:14:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:14:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:14:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:14:00] 
[2025-06-04 11:14:00] 2025-06-04 09:12:38,132 | INFO     | **************************************
[2025-06-04 11:14:00] 2025-06-04 09:12:38,635 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 11:14:00] 2025-06-04 09:12:38,824 | INFO     | sufficient remaining disk space (496902340608 B)
[2025-06-04 11:14:00] 2025-06-04 09:12:38,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:14:00] 2025-06-04 09:12:38,825 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:14:00] 2025-06-04 09:12:38,825 | INFO     | update_server=False
[2025-06-04 11:14:00] 2025-06-04 09:12:38,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:14:00] 2025-06-04 09:12:38,826 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:14:00] 2025-06-04 09:12:38,826 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:14:00] 2025-06-04 09:12:38,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:14:00] 2025-06-04 09:12:38,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:14:00] 2025-06-04 09:12:38,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:14:00] 2025-06-04 09:12:38,939 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:14:00] 2025-06-04 09:12:38,939 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:14:00] 2025-06-04 09:12:38,939 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:14:00] 2025-06-04 09:12:38,940 | INFO     | will abort loop
[2025-06-04 11:14:00] 2025-06-04 09:12:39,800 | INFO     | all data control threads have been joined
[2025-06-04 11:14:00] 2025-06-04 09:12:39,831 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:39,898 | INFO     | all job control threads have been joined
[2025-06-04 11:14:00] 2025-06-04 09:12:39,945 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:39,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:14:00] 2025-06-04 09:12:39,999 | INFO     | all payload control threads have been joined
[2025-06-04 11:14:00] 2025-06-04 09:12:40,272 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,369 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,542 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,697 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,719 | INFO     | [job] validate thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,806 | INFO     | [data] control thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:14:00] 2025-06-04 09:12:40,835 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,904 | INFO     | [job] control thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:40,926 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:41,004 | INFO     | [payload] control thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:41,077 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:41,819 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:43,966 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:49,374 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:14:00] 2025-06-04 09:12:50,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:14:00] 2025-06-04 09:12:51,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646476179264)>', '<ExcThread(monitor, started 140646178334464)>']
[2025-06-04 11:14:00] 2025-06-04 09:12:51,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:14:00] 2025-06-04 09:12:51,903 | INFO     | [monitor] control thread has ended
[2025-06-04 11:14:00] 2025-06-04 09:12:56,689 | INFO     | all workflow threads have been joined
[2025-06-04 11:14:00] 2025-06-04 09:12:56,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:14:00] 2025-06-04 09:12:56,690 | INFO     | traces error code: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:56,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:14:00] 2025-06-04 09:12:57,160 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:14:00] 2025-06-04 09:12:57,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:14:00] 2025-06-04 09:12:57,289 [wrapper] pilotpid: 30907
[2025-06-04 11:14:00] 2025-06-04 09:12:57,398 [wrapper] Pilot exit status: 0
[2025-06-04 11:14:00] 2025-06-04 09:12:57,821 [wrapper] pandaids: 6677677422
[2025-06-04 11:14:00] 2025-06-04 09:12:58,855 [wrapper] cleanup supervisor_pilot  6300 30908
[2025-06-04 11:14:00] 2025-06-04 09:12:58,964 [wrapper] Test setup, not cleaning
[2025-06-04 11:14:00] 2025-06-04 09:12:59,024 [wrapper] apfmon messages muted
[2025-06-04 11:14:00] 2025-06-04 09:12:59,080 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:14:00] 2025-06-04 09:12:59,191 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:14:00]  *** Error codes and diagnostics ***
[2025-06-04 11:14:00]     "exeErrorCode": 0,
[2025-06-04 11:14:00]     "exeErrorDiag": "",
[2025-06-04 11:14:00]     "pilotErrorCode": 0,
[2025-06-04 11:14:00]     "pilotErrorDiag": "",
[2025-06-04 11:14:00]  *** Listing of results directory ***
[2025-06-04 11:14:00] total 388640
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:35 pilot3.tar.gz
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:41 queuedata.json
[2025-06-04 11:14:00] -rwx------. 1 boinc boinc     37140 Jun  3 17:41 runpilot2-wrapper.sh
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc       100 Jun  4 07:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:14:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 07:03 run_atlas
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc       105 Jun  4 07:03 job.xml
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc 214836060 Jun  4 07:03 EVNT.45006593._001496.pool.root.1
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc    508878 Jun  4 07:03 input.tar.gz
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc      6391 Jun  4 07:03 init_data.xml
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:03 start_atlas.sh
[2025-06-04 11:14:00] drwxrwx--x. 2 boinc boinc        68 Jun  4 07:03 shared
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc         0 Jun  4 07:03 boinc_lockfile
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc      2525 Jun  4 07:14 pandaJob.out
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc    986745 Jun  4 07:17 agis_schedconf.cvmfs.json
[2025-06-04 11:14:00] drwx------. 4 boinc boinc      4096 Jun  4 07:17 pilot3
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc 176168556 Jun  4 11:10 HITS.45006595._037232.pool.root.1
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc       531 Jun  4 11:10 boinc_task_state.xml
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc      1015 Jun  4 11:11 memory_monitor_summary.json
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc   1603667 Jun  4 11:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc    372223 Jun  4 11:11 log.45006595._037232.job.log.tgz.1
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc        95 Jun  4 11:12 pilot_heartbeat.json
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc      7699 Jun  4 11:12 heartbeat.json
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc      4797 Jun  4 11:12 pilotlog.txt
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc   1200238 Jun  4 11:12 log.45006595._037232.job.log.1
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc       357 Jun  4 11:13 output.list
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc       620 Jun  4 11:13 runtime_log
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc   1587200 Jun  4 11:13 result.tar.gz
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc      8659 Jun  4 11:13 runtime_log.err
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc       657 Jun  4 11:13 cRhMDmWwig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4rkKDmShtN2m.diag
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:14 boinc_mmap_file
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:14 wrapper_checkpoint.txt
[2025-06-04 11:14:00] -rw-r--r--. 1 boinc boinc     20524 Jun  4 11:14 stderr.txt
[2025-06-04 11:14:00] HITS file was successfully produced:
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc 176168556 Jun  4 11:10 shared/HITS.pool.root.1
[2025-06-04 11:14:00]  *** Contents of shared directory: ***
[2025-06-04 11:14:00] total 383912
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc 214836060 Jun  4 07:03 ATLAS.root_0
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc    508878 Jun  4 07:03 input.tar.gz
[2025-06-04 11:14:00] -rw-r--r--. 2 boinc boinc     15093 Jun  4 07:03 start_atlas.sh
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc 176168556 Jun  4 11:10 HITS.pool.root.1
[2025-06-04 11:14:00] -rw-------. 1 boinc boinc   1587200 Jun  4 11:13 result.tar.gz
11:14:02 (18523): run_atlas exited; CPU time 49768.495074
11:14:02 (18523): called boinc_finish(0)

</stderr_txt>
]]>

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