Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:38:21 (2627691): wrapper (7.7.26015): starting
11:38:21 (2627691): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:38:21] Arguments: --nthreads 8
[2025-06-03 11:38:21] Threads: 8
[2025-06-03 11:38:21] Checking for CVMFS
[2025-06-03 11:38:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:38:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:38:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:38:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:38:23] 2.11.3.0 1807141 32237 154204 146752 2 61 41091564 45568001 11589 130560 0 260566804 99.815 161489926 20850 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 11:38:23] CVMFS is ok
[2025-06-03 11:38:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:38:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:38:23] Further information can be found at the LHC@home message board.
[2025-06-03 11:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:38:23] Checking for apptainer binary...
[2025-06-03 11:38:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:38:23] Running /usr/bin/apptainer --version
[2025-06-03 11:38:23] apptainer version 1.3.3-1.el9
[2025-06-03 11:38:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:38:23] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0010.triumf.lcg
[2025-06-03 11:38:23] apptainer works
[2025-06-03 11:38:23] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:38:23] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:38:23] Starting ATLAS job with PandaID=6677863884
[2025-06-03 11:38:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:43:22]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard info from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | WARNING  | wrong length of table data, x=[1748975983.0, 1748976044.0], y=[1893.0, 463193.0] (must be same and length>=4)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | . Timing measurements:
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . get job = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . initial setup = 6 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . payload setup = 19 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . stage-in = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . payload execution = 82 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . stage-out = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . log creation = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677863884/pilotlog.txt
[2025-06-03 11:43:22] 2025-06-03 18:43:05,906 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 11:43:22] - Log from pilotlog.txt -
[2025-06-03 11:43:22] 2025-06-03 18:43:05,886 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:43:22] 2025-06-03 18:43:05,887 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6677863884/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard info from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | WARNING  | wrong length of table data, x=[1748975983.0, 1748976044.0], y=[1893.0, 463193.0] (must be same and length>=4)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | . Timing measurements:
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . get job = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . initial setup = 6 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . payload setup = 19 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . stage-in = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . payload execution = 82 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . stage-out = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . log creation = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677863884/pilotlog.txt
[2025-06-03 11:43:22] 2025-06-03 18:43:05,906 | WARNING  | 
[2025-06-03 11:43:22] [begin log extracts]
[2025-06-03 11:43:22] - Log from pilotlog.txt -
[2025-06-03 11:43:22] 2025-06-03 18:43:05,886 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:43:22] 2025-06-03 18:43:05,887 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6677863884/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard info from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:43:22] 2025-06-03 18:43:05,888 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | WARNING  | wrong length of table data, x=[1748975983.0, 1748976044.0], y=[1893.0, 463193.0] (must be same and length>=4)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,889 | INFO     | . Timing measurements:
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . get job = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . initial setup = 6 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . payload setup = 19 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,890 | INFO     | . stage-in = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . payload execution = 82 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . stage-out = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | . log creation = 0 s
[2025-06-03 11:43:22] 2025-06-03 18:43:05,892 | INFO     | ..............................
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:43:22] 2025-06-03 18:43:05,893 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677863884/pilotlog.txt
[2025-06-03 11:43:22] [end log extracts]
[2025-06-03 11:43:22] 2025-06-03 18:43:05,906 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 11:43:22] 2025-06-03 18:43:05,907 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 11:43:22] 2025-06-03 18:43:06,039 | INFO     | 
[2025-06-03 11:43:22] 2025-06-03 18:43:06,039 | INFO     | job summary report
[2025-06-03 11:43:22] 2025-06-03 18:43:06,039 | INFO     | --------------------------------------------------
[2025-06-03 11:43:22] 2025-06-03 18:43:06,039 | INFO     | PanDA job id: 6677863884
[2025-06-03 11:43:22] 2025-06-03 18:43:06,039 | INFO     | task id: 45006595
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 11:40:43,164 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | pilot state: failed 
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | transexitcode: 65
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | exeerrorcode: 65
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | exitcode: 65
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | cpuconsumptiontime: 19 s
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | nevents: 0
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | neventsw: 0
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | pid: 2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | pgrp: 2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | corecount: 8
[2025-06-03 11:43:22] 2025-06-03 18:43:06,040 | INFO     | event service: False
[2025-06-03 11:43:22] 2025-06-03 18:43:06,041 | INFO     | sizes: {0: 2405181, 9: 2405387, 11: 2405415, 106: 2428588, 108: 2432823, 109: 2432851, 233: 2433149}
[2025-06-03 11:43:22] 2025-06-03 18:43:06,041 | INFO     | --------------------------------------------------
[2025-06-03 11:43:22] 2025-06-03 18:43:06,041 | INFO     | 
[2025-06-03 11:43:22] 2025-06-03 18:43:06,041 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 11:43:22] 2025-06-03 18:43:06,241 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,241 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,242 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,242 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,242 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,255 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,255 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,255 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,255 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,255 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | job 6677863884 has completed (purged errors)
[2025-06-03 11:43:22] 2025-06-03 18:43:06,256 | INFO     | overall cleanup function is called
[2025-06-03 11:43:22] 2025-06-03 18:43:06,496 | INFO     | PID=2631267 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 11:43:22] 2025-06-03 18:43:06,522 | INFO     | .. there are 19 such processes running
[2025-06-03 11:43:22] 2025-06-03 18:43:07,262 | INFO     | --- collectZombieJob: --- 10, [2637591]
[2025-06-03 11:43:22] 2025-06-03 18:43:07,267 | INFO     | zombie collector waiting for pid 2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:07,267 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:43:22] 2025-06-03 18:43:07,267 | INFO     | collected zombie processes
[2025-06-03 11:43:22] 2025-06-03 18:43:07,267 | INFO     | will attempt to kill all subprocesses of pid=2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:07,446 | INFO     | process IDs to be killed: [2637591] (in reverse order)
[2025-06-03 11:43:22] 2025-06-03 18:43:07,547 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:43:22] 2025-06-03 18:43:07,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:43:22] 2025-06-03 18:43:07,554 | INFO     | did not find any defunct processes belonging to 2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:07,561 | INFO     | did not find any defunct processes belonging to 2637591
[2025-06-03 11:43:22] 2025-06-03 18:43:07,562 | INFO     | ready for new job
[2025-06-03 11:43:22] 2025-06-03 18:43:07,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:43:22] 2025-06-03 18:43:07,563 | INFO     | **************************************
[2025-06-03 11:43:22] 2025-06-03 18:43:07,563 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:43:22] 2025-06-03 18:43:07,563 | INFO     | **************************************
[2025-06-03 11:43:22] 2025-06-03 18:43:07,563 | INFO     | 
[2025-06-03 11:43:22] 2025-06-03 18:43:07,578 | INFO     | architecture information:
[2025-06-03 11:43:22] 2025-06-03 18:43:07,583 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:43:22] 2025-06-03 18:43:07,604 | INFO     | cat /etc/os-release:
[2025-06-03 11:43:22] NAME="CentOS Linux"
[2025-06-03 11:43:22] VERSION="7 (Core)"
[2025-06-03 11:43:22] ID="centos"
[2025-06-03 11:43:22] ID_LIKE="rhel fedora"
[2025-06-03 11:43:22] VERSION_ID="7"
[2025-06-03 11:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:43:22] ANSI_COLOR="0;31"
[2025-06-03 11:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:43:22] HOME_URL="https://www.centos.org/"
[2025-06-03 11:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:43:22] 
[2025-06-03 11:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:43:22] 
[2025-06-03 11:43:22] 2025-06-03 18:43:07,605 | INFO     | **************************************
[2025-06-03 11:43:22] 2025-06-03 18:43:08,122 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 11:43:22] 2025-06-03 18:43:08,143 | INFO     | sufficient remaining disk space (1283714973696 B)
[2025-06-03 11:43:22] 2025-06-03 18:43:08,143 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:43:22] 2025-06-03 18:43:08,143 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:43:22] 2025-06-03 18:43:08,143 | INFO     | update_server=False
[2025-06-03 11:43:22] 2025-06-03 18:43:08,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:43:22] 2025-06-03 18:43:08,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:22] 2025-06-03 18:43:08,144 | INFO     | aborting loop
[2025-06-03 11:43:22] 2025-06-03 18:43:08,530 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:43:22] 2025-06-03 18:43:08,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:43:22] 2025-06-03 18:43:08,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:43:22] 2025-06-03 18:43:08,589 | INFO     | all data control threads have been joined
[2025-06-03 11:43:22] 2025-06-03 18:43:08,668 | INFO     | all job control threads have been joined
[2025-06-03 11:43:22] 2025-06-03 18:43:09,149 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,154 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,256 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,281 | INFO     | all payload control threads have been joined
[2025-06-03 11:43:22] 2025-06-03 18:43:09,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:43:22] 2025-06-03 18:43:09,595 | INFO     | [data] control thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,673 | INFO     | [job] control thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,725 | INFO     | [job] validate thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,866 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:09,897 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:10,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:43:22] 2025-06-03 18:43:10,257 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:10,287 | INFO     | [payload] control thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:10,353 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:10,356 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:11,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:43:22] 2025-06-03 18:43:11,553 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:12,060 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:14,209 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:43:22] 2025-06-03 18:43:15,550 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356815873856)>', '<ExcThread(monitor, started 140355806672640)>']
[2025-06-03 11:43:22] 2025-06-03 18:43:15,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:43:22] 2025-06-03 18:43:15,579 | INFO     | [monitor] control thread has ended
[2025-06-03 11:43:22] 2025-06-03 18:43:20,576 | INFO     | all workflow threads have been joined
[2025-06-03 11:43:22] 2025-06-03 18:43:20,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:43:22] 2025-06-03 18:43:20,577 | INFO     | traces error code: 0
[2025-06-03 11:43:22] 2025-06-03 18:43:20,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:43:22] 2025-06-03 18:43:21,275 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:43:22] 2025-06-03 18:43:21,313 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:43:22] 2025-06-03 18:43:21,351 [wrapper] pilotpid: 2631267
[2025-06-03 11:43:22] 2025-06-03 18:43:21,387 [wrapper] Pilot exit status: 0
[2025-06-03 11:43:22] 2025-06-03 18:43:21,630 [wrapper] pandaids: 6677863884
[2025-06-03 11:43:22] 2025-06-03 18:43:22,420 [wrapper] cleanup supervisor_pilot 2631273 2631268
[2025-06-03 11:43:22] 2025-06-03 18:43:22,436 [wrapper] Test setup, not cleaning
[2025-06-03 11:43:22] 2025-06-03 18:43:22,452 [wrapper] apfmon messages muted
[2025-06-03 11:43:22] 2025-06-03 18:43:22,477 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:43:22] 2025-06-03 18:43:22,483 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:43:22]  *** Error codes and diagnostics ***
[2025-06-03 11:43:22]     "exeErrorCode": 65,
[2025-06-03 11:43:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 11:43:22]     "pilotErrorCode": 1305,
[2025-06-03 11:43:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 11:43:22]  *** Listing of results directory ***
[2025-06-03 11:43:22] total 214064
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:58 pilot3.tar.gz
[2025-06-03 11:43:22] -rwx------. 1 boinc boinc     37140 Jun  3 10:34 runpilot2-wrapper.sh
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc      5111 Jun  3 10:34 queuedata.json
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:43:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:38 run_atlas
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:38 job.xml
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc      6452 Jun  3 11:38 init_data.xml
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc 215159411 Jun  3 11:38 EVNT.45006593._001631.pool.root.1
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:38 start_atlas.sh
[2025-06-03 11:43:22] drwxrwx--x. 2 boinc boinc      4096 Jun  3 11:38 shared
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:38 input.tar.gz
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:38 boinc_lockfile
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc      2525 Jun  3 11:38 pandaJob.out
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc    986893 Jun  3 11:38 agis_schedconf.cvmfs.json
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc   1603667 Jun  3 11:38 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:43:22] drwx------. 4 boinc boinc      4096 Jun  3 11:38 pilot3
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc       525 Jun  3 11:40 boinc_task_state.xml
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc       993 Jun  3 11:40 memory_monitor_summary.json
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc     20647 Jun  3 11:41 log.45006595._040711.job.log.tgz.1
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc        95 Jun  3 11:42 pilot_heartbeat.json
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc      8325 Jun  3 11:43 heartbeat.json
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:43 boinc_mmap_file
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc        23 Jun  3 11:43 wrapper_checkpoint.txt
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc      4352 Jun  3 11:43 pilotlog.txt
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc     79811 Jun  3 11:43 log.45006595._040711.job.log.1
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc       188 Jun  3 11:43 output.list
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:43 runtime_log
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc    122880 Jun  3 11:43 result.tar.gz
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc       647 Jun  3 11:43 VZBNDmSikg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6RZKDmjFP6Uo.diag
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc      8647 Jun  3 11:43 runtime_log.err
[2025-06-03 11:43:22] -rw-r--r--. 1 boinc boinc     21928 Jun  3 11:43 stderr.txt
[2025-06-03 11:43:22] No HITS result produced
[2025-06-03 11:43:22]  *** Contents of shared directory: ***
[2025-06-03 11:43:22] total 210760
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc 215159411 Jun  3 11:38 ATLAS.root_0
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:38 start_atlas.sh
[2025-06-03 11:43:22] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:38 input.tar.gz
[2025-06-03 11:43:22] -rw-------. 1 boinc boinc    122880 Jun  3 11:43 result.tar.gz
11:43:24 (2627691): run_atlas exited; CPU time 26.692120
11:43:24 (2627691): called boinc_finish(0)

</stderr_txt>
]]>

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